counts_matrix_from_assay() function doesn't exist

[AmyOlex]

In the README for this package there are the following lines to extract the count data for the create_loupe() function:

# get counts matrix from either the old or newer formats of assay
counts <- counts_matrix_from_assay(assay)

However, after loading the LoupeR package it says this function doesn't exist. In the tutorials the following is utilized, which does work:

# Get the count matrix from a Seurat object:
count_mat <- seurat_obj@assays$RNA@counts

[esiegel]

What version of loupeR do you have installed? This function was added here #23, but there hasn't been a new release since. You would have to install the latest version to get this function.

remotes::install_github("10XGenomics/loupeR")
loupeR::setup()

I will make a new update shortly.

[esiegel]

Releae v1.0.2