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.gitmodules
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[submodule "tools/FastQC"]
path = tools/FastQC
url = https://github.com/s-andrews/FastQC
[submodule "tools/bwa"]
path = tools/bwa
url = https://github.com/lh3/bwa.git
[submodule "tools/bam-readcount"]
path = tools/bam-readcount
url = https://github.com/genome/bam-readcount
[submodule "tools/samtools"]
path = tools/samtools
url = https://github.com/samtools/samtools
[submodule "tools/FREEC"]
path = tools/FREEC
url = https://github.com/BoevaLab/FREEC
[submodule "tools/htslib"]
path = tools/htslib
url = https://github.com/samtools/htslib
[submodule "tools/cnvkit"]
path = tools/cnvkit
url = https://github.com/etal/cnvkit.git
[submodule "tools/msisensor2"]
path = tools/msisensor2
url = https://github.com/niu-lab/msisensor2.git
[submodule "tools/msisensor-pro"]
path = tools/msisensor-pro
url = https://github.com/xjtu-omics/msisensor-pro
[submodule "tools/fusioncatcher"]
path = tools/fusioncatcher
url = https://github.com/ndaniel/fusioncatcher