.travis.yml

# adapted from http://conda.pydata.org/docs/travis.html
language: python
python:
 # We don't actually use the Travis Python, but this keeps it organized.
 - "2.7"
 - "3.4"

before_install:
 - sudo apt-get update -qq

 # download and install miniconda
 - wget http://repo.continuum.io/miniconda/Miniconda-3.5.5-Linux-x86_64.sh -O miniconda.sh;
 - bash miniconda.sh -b -p $HOME/conda
 - export PATH="$HOME/conda/bin:$PATH"
 - hash -r
 - conda config --set always_yes yes --set changeps1 no
 - conda update -q conda
 # Useful for debugging any issues with conda
 - conda info -a

 # create and activate the build/test environment
 - conda create -q -n tenv python=$TRAVIS_PYTHON_VERSION pip cmake
 - source activate tenv

install:
 # install the build tools
 - sudo apt-get install -qq build-essential

 # and the base dependencies
 - sudo apt-get install -qq openjdk-7-jdk swig # for the java wrappers

 - sudo apt-get install libjpeg62 # for pillow
 - conda install -q numpy pillow pandas # matplotlib
 
 # install the conda boost packages from the RDKit binstar channel.
 - conda install -q -c rdkit boost=1.55.0


before_script:
 # RDKit
 - export RDBASE=`pwd`
 - echo $RDBASE
 - export PYTHONPATH=${RDBASE}
 - export LD_LIBRARY_PATH=${RDBASE}/lib

 - mkdir $RDBASE/External/java_lib
 - wget http://search.maven.org/remotecontent?filepath=junit/junit/4.10/junit-4.10.jar -O $RDBASE/External/java_lib/junit.jar
 - ls -l $RDBASE/External/java_lib

 - mkdir $RDBASE/External/AvalonTools/distrib
 - wget https://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar/download -O $RDBASE/External/AvalonTools/distrib/AvalonToolkit_1.2.0.source.tar
 - cd $RDBASE/External/AvalonTools/distrib
 - tar xf AvalonToolkit_1.2.0.source.tar
 - ls -l $RDBASE/External/AvalonTools/distrib
 
 - export PYTHON=`which python`
 - echo $PYTHON
 - export PY_PREFIX=`$PYTHON -c "import sys; print(sys.prefix)"`
 - echo $PY_PREFIX
 - export PY_SP_DIR=$PY_PREFIX/lib/python$TRAVIS_PYTHON_VERSION/site-packages
 - echo $PY_SP_DIR


script:
 - cd $RDBASE
 - mkdir build
 - cd build
 - cmake -D Python_ADDITIONAL_VERSIONS=$TRAVIS_PYTHON_VERSION -D PYTHON_EXECUTABLE=$PYTHON -D PYTHON_LIBRARY=`find $PY_PREFIX -name "libpython$TRAVIS_PYTHON_VERSION*.so"` -D PYTHON_NUMPY_INCLUDE_PATH=$PY_SP_DIR/numpy/core/include -D BOOST_ROOT=$PY_PREFIX -D Boost_NO_SYSTEM_PATHS=ON -D RDK_BUILD_SWIG_WRAPPERS=ON -D AVALONTOOLS_DIR=$RDBASE/External/AvalonTools/distrib/SourceDistribution -D RDK_BUILD_AVALON_SUPPORT=ON ..
 - cat CMakeCache.txt # useful for debugging/troubleshooting

 - make -j2
 - make install
 - ctest --output-on-failure