diff --git a/.Rbuildignore b/.Rbuildignore index 3293661d..570290ce 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -7,3 +7,4 @@ ^\.lintr$ ^\.github$ ^pkgdown$ +^e2e diff --git a/.github/workflows/e2e-tests.yml b/.github/workflows/e2e-tests.yml new file mode 100644 index 00000000..10e5d9b3 --- /dev/null +++ b/.github/workflows/e2e-tests.yml @@ -0,0 +1,30 @@ +name: Cypress Tests + +on: push + +jobs: + cypress-run: + runs-on: ubuntu-22.04 + steps: + + - name: Checkout + uses: actions/checkout@v3 + + - name: Install R + uses: r-lib/actions/setup-r@v2 + with: + r-version: release + + - name: Install R dependencies + uses: r-lib/actions/setup-r-dependencies@v2 + with: + cache-version: 2 + needs: check + pak-version: 'devel' + extra-packages: any::devtools, any::optparse, local::. + + - name: Cypress install and run + uses: cypress-io/github-action@v5 + with: + working-directory: e2e + command: yarn e2e-test diff --git a/.github/workflows/r-cmd-check.yml b/.github/workflows/r-cmd-check.yml index e00df712..7f13b9c9 100644 --- a/.github/workflows/r-cmd-check.yml +++ b/.github/workflows/r-cmd-check.yml @@ -52,7 +52,7 @@ jobs: cache-version: 2 needs: check pak-version: 'stable' - extra-packages: local::. # Necessary to avoid object usage linter errors. + extra-packages: any::devtools, any::optparse, local::. - name: R CMD check uses: r-lib/actions/check-r-package@v2 diff --git a/.gitignore b/.gitignore index c7abf365..461e46ae 100644 --- a/.gitignore +++ b/.gitignore @@ -55,3 +55,8 @@ inst/doc data/ *.DS_Store + +# Cypress +e2e/yarn-error.log +e2e/cypress/downloads +e2e/cypress/videos diff --git a/e2e/create_test_template.sh b/e2e/create_test_template.sh new file mode 100755 index 00000000..7f7f9e28 --- /dev/null +++ b/e2e/create_test_template.sh @@ -0,0 +1,17 @@ +#!/bin/bash + +if [ "$#" -ne 1 ]; then + echo "Usage: $0 " + exit 1 +fi + +custom_text="$1" +cy_spec_out="$1.cy.js" + +# Escape special characters in the custom_text to use in sed +escaped_custom_text=$(printf '%s\n' "$custom_text" | sed -e 's/[\/&]/\\&/g') + +# Replace with sed +cat "cypress/e2e/template.template" | sed "s/<<>>/$escaped_custom_text/g" >> cypress/e2e/$cy_spec_out + +echo "cypress/e2e/$cy_spec_out created" diff --git a/e2e/cypress.config.js b/e2e/cypress.config.js new file mode 100644 index 00000000..585f9c4d --- /dev/null +++ b/e2e/cypress.config.js @@ -0,0 +1,27 @@ +const { defineConfig } = require("cypress"); +const { initPlugin } = require("cypress-plugin-snapshots/plugin"); + +module.exports = defineConfig({ + e2e: { + setupNodeEvents(on, config) { + // implement node event listeners here + initPlugin(on, config); // this is cypress/plugins/index.js in Cypress v9 + return config; + }, + excludeSpecPattern: [ + "**/__snapshots__/*", + "**/__image_snapshots__/*" + ] + }, + env: { + "cypress-plugin-snapshots": { + "imageConfig": { + "threshold": 1, // Amount in pixels or percentage before snapshot image is invalid + "thresholdType": "percent" // Can be either "pixels" or "percent" + }, + }, + "screenshotConfig": { + "timeout": 60000 + }, + } +}); diff --git a/e2e/cypress/README.md b/e2e/cypress/README.md new file mode 100644 index 00000000..44f56878 --- /dev/null +++ b/e2e/cypress/README.md @@ -0,0 +1,42 @@ +## Updating e2e tests +When adding new shiny app examples to the `inst/examples` folder we encourage you to add e2e tests for these example apps. + +### Adding tests manually +You can add any e2e spec file manually. In order to catch these tests with the script that we'll use to run the e2e tests of shiny apps you only need to put the example Shiny apps in the `inst/examples` folder and create an e2e spec file under `tests/cypress/e2e` following the same name. For example if the newly created example app is named `myNewShinyApp` and is located at `inst/examples/myNewShinyApp` then the spec file should be named `tests/cypress/e2e/myNewShinyApp.cy.js`. + +### Using `create_test_template.sh` + +You can use the `tests/create_test_template.sh` to create a runnable e2e template test. +Let's use the script assuming that you have created an example shiny app in the `inst/examples` folder named `myNewShinyApp` + +1. Go to the `tests/` folder +2. Run `create_test_template myNewShinyApp`. Note that the parameter passed to the script should be the name of the +folder in which the example app was created. This will create a template spec file: + a. An `.cy.js` spec file at `tests/cypress/e2e/myNewShinyApp.cy.js` that will contain a simple e2e snapshot test. You can +add more tests to this file that are expected for your shiny app. + +After running the script you would be able to run the following script for the newly created tests +```bash +# Run the e2e tests +run_cypress_tests.sh myNewShinyApp +``` + +### Running tests + +**Running a single test** +Given an example app named `myNewShinyApp` under the `inst/examples` folder and a spec file named `myNewShinyApp.cy.js` in the `tests/cypress/e2e` folder you can run the e2e tests for this app in the following way: +1. Go to the terminal +2. Run the following command (when located in the `tests/` folder) +```bash +# Run the e2e tests +run_cypress_tests.sh myNewShinyApp +``` + +**Running all of the e2e tests** +1. Go to the terminal +2. Run the following command (when located in the `tests/` folder)* +```bash +# Run the e2e tests +run_cypress_tests.sh +``` +***Note that we are running the same exact command without specifying an example app name** diff --git a/e2e/cypress/e2e/__image_snapshots__/areaChart Snapshots Screenshots are matching up #0.png b/e2e/cypress/e2e/__image_snapshots__/areaChart Snapshots Screenshots are matching up #0.png new file mode 100644 index 00000000..ed48136b Binary files /dev/null and b/e2e/cypress/e2e/__image_snapshots__/areaChart Snapshots Screenshots are matching up #0.png differ diff --git a/e2e/cypress/e2e/__image_snapshots__/barChart Snapshots Screenshots are matching up #0.png b/e2e/cypress/e2e/__image_snapshots__/barChart Snapshots Screenshots are matching up #0.png new file mode 100644 index 00000000..07330075 Binary files /dev/null and b/e2e/cypress/e2e/__image_snapshots__/barChart Snapshots Screenshots are matching up #0.png differ diff --git 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#0.png b/e2e/cypress/e2e/__image_snapshots__/textMarks Snapshots Screenshots are matching up #0.png new file mode 100644 index 00000000..3654cfbb Binary files /dev/null and b/e2e/cypress/e2e/__image_snapshots__/textMarks Snapshots Screenshots are matching up #0.png differ diff --git a/e2e/cypress/e2e/areaChart.cy.js b/e2e/cypress/e2e/areaChart.cy.js new file mode 100644 index 00000000..48f9a32a --- /dev/null +++ b/e2e/cypress/e2e/areaChart.cy.js @@ -0,0 +1,14 @@ +describe('areaChart Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); diff --git a/e2e/cypress/e2e/barChart.cy.js b/e2e/cypress/e2e/barChart.cy.js new file mode 100644 index 00000000..9063bd8e --- /dev/null +++ b/e2e/cypress/e2e/barChart.cy.js @@ -0,0 +1,14 @@ +describe('barChart Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) +}); diff --git a/e2e/cypress/e2e/circularLinearWithBrush.cy.js b/e2e/cypress/e2e/circularLinearWithBrush.cy.js new file mode 100644 index 00000000..0654c200 --- /dev/null +++ b/e2e/cypress/e2e/circularLinearWithBrush.cy.js @@ -0,0 +1,28 @@ +describe('circularLinearWithBrush Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 3) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + + // Interact with selectizeInput + cy.get('.selectize-control').click(); + cy.get('div[data-value="chrX"]').click(); + cy.get('#go_to_chr').click(); + + cy.wait(5000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + // event to listen to + cy.get(".center-track") + .should('have.length', 3) + .each( ($element, index, $list) => { + const snapshotName = `circular-linear-with-brush-snapshot-track-${index}` + cy.wrap($element).should('be.visible').toMatchImageSnapshot(name = snapshotName); + }) + }); + }) +}); diff --git a/e2e/cypress/e2e/circularVisualEncoding.cy.js b/e2e/cypress/e2e/circularVisualEncoding.cy.js new file mode 100644 index 00000000..4a525382 --- /dev/null +++ b/e2e/cypress/e2e/circularVisualEncoding.cy.js @@ -0,0 +1,15 @@ +describe('circularVisualEncoding Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/ideograms.cy.js b/e2e/cypress/e2e/ideograms.cy.js new file mode 100644 index 00000000..35e96b42 --- /dev/null +++ b/e2e/cypress/e2e/ideograms.cy.js @@ -0,0 +1,15 @@ +describe('ideogram Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/lineChart.cy.js b/e2e/cypress/e2e/lineChart.cy.js new file mode 100644 index 00000000..bcd09057 --- /dev/null +++ b/e2e/cypress/e2e/lineChart.cy.js @@ -0,0 +1,15 @@ +describe('lineChart Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/multiTrackApp.cy.js b/e2e/cypress/e2e/multiTrackApp.cy.js new file mode 100644 index 00000000..c99830c2 --- /dev/null +++ b/e2e/cypress/e2e/multiTrackApp.cy.js @@ -0,0 +1,15 @@ +describe('multiTrackApp Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/pointPlot.cy.js b/e2e/cypress/e2e/pointPlot.cy.js new file mode 100644 index 00000000..432a9a62 --- /dev/null +++ b/e2e/cypress/e2e/pointPlot.cy.js @@ -0,0 +1,15 @@ +describe('pointPlot Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/ruleMarks.cy.js b/e2e/cypress/e2e/ruleMarks.cy.js new file mode 100644 index 00000000..af616985 --- /dev/null +++ b/e2e/cypress/e2e/ruleMarks.cy.js @@ -0,0 +1,15 @@ +describe('ruleMarks Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/sarsCov2.cy.js b/e2e/cypress/e2e/sarsCov2.cy.js new file mode 100644 index 00000000..9b13d8ef --- /dev/null +++ b/e2e/cypress/e2e/sarsCov2.cy.js @@ -0,0 +1,15 @@ +describe('sarsCov2 Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(20000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 5) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/staticCircularBar.cy.js b/e2e/cypress/e2e/staticCircularBar.cy.js new file mode 100644 index 00000000..c5427b53 --- /dev/null +++ b/e2e/cypress/e2e/staticCircularBar.cy.js @@ -0,0 +1,15 @@ +describe('staticCircularBar Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/structuralVariant.cy.js b/e2e/cypress/e2e/structuralVariant.cy.js new file mode 100644 index 00000000..3eadc871 --- /dev/null +++ b/e2e/cypress/e2e/structuralVariant.cy.js @@ -0,0 +1,15 @@ +describe('structuralVariant Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/template.template b/e2e/cypress/e2e/template.template new file mode 100644 index 00000000..7fe9a6bc --- /dev/null +++ b/e2e/cypress/e2e/template.template @@ -0,0 +1,15 @@ +describe('<<>> Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/textAnnotation.cy.js b/e2e/cypress/e2e/textAnnotation.cy.js new file mode 100644 index 00000000..d52f232d --- /dev/null +++ b/e2e/cypress/e2e/textAnnotation.cy.js @@ -0,0 +1,15 @@ +describe('textAnnotation Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/e2e/textMarks.cy.js b/e2e/cypress/e2e/textMarks.cy.js new file mode 100644 index 00000000..d8c9163a --- /dev/null +++ b/e2e/cypress/e2e/textMarks.cy.js @@ -0,0 +1,15 @@ +describe('textMarks Snapshots', () => { + it('Screenshots are matching up', () => { + cy.visit('http://127.0.0.1:8888') + .then(() => { + cy.wait(10000); // TODO (Fede Jul 24 2023) Remove explicit waits when we found an onRender/onAnimateTransform, etc. + + cy.get(".center-track") + .should('have.length', 1) + .each( ($element, index, $list) => { + cy.wrap($element).should('be.visible').toMatchImageSnapshot(); + }) + }); + }) + }); + \ No newline at end of file diff --git a/e2e/cypress/plugins/index.js b/e2e/cypress/plugins/index.js new file mode 100644 index 00000000..d245ad73 --- /dev/null +++ b/e2e/cypress/plugins/index.js @@ -0,0 +1,6 @@ +const { initPlugin } = require('cypress-plugin-snapshots/plugin'); + +module.exports = (on, config) => { + initPlugin(on, config); + return config; +}; diff --git a/e2e/cypress/r_scripts/template.R b/e2e/cypress/r_scripts/template.R new file mode 100644 index 00000000..56e58aba --- /dev/null +++ b/e2e/cypress/r_scripts/template.R @@ -0,0 +1,6 @@ +devtools::load_all() +port <- commandArgs(TRUE) +shiny::runApp( + appDir = "../inst/examples/<<>>/app.R", + port = as.numeric(port) +) diff --git a/e2e/cypress/support/commands.js b/e2e/cypress/support/commands.js new file mode 100644 index 00000000..d7299879 --- /dev/null +++ b/e2e/cypress/support/commands.js @@ -0,0 +1,29 @@ +// *********************************************** +// This example commands.js shows you how to +// create various custom commands and overwrite +// existing commands. +// +// For more comprehensive examples of custom +// commands please read more here: +// https://on.cypress.io/custom-commands +// *********************************************** +// +// +// -- This is a parent command -- +// Cypress.Commands.add('login', (email, password) => { ... }) +// +// +// -- This is a child command -- +// Cypress.Commands.add('drag', { prevSubject: 'element'}, (subject, options) => { ... }) +// +// +// -- This is a dual command -- +// Cypress.Commands.add('dismiss', { prevSubject: 'optional'}, (subject, options) => { ... }) +// +// +// -- This will overwrite an existing command -- +// Cypress.Commands.overwrite('visit', (originalFn, url, options) => { ... }) +Cypress.on('uncaught:exception', (err, runnable) => { + return false + }) + \ No newline at end of file diff --git a/e2e/cypress/support/e2e.js b/e2e/cypress/support/e2e.js new file mode 100644 index 00000000..13cd2c5f --- /dev/null +++ b/e2e/cypress/support/e2e.js @@ -0,0 +1,18 @@ +// *********************************************************** +// This example support/e2e.js is processed and +// loaded automatically before your test files. +// +// This is a great place to put global configuration and +// behavior that modifies Cypress. +// +// You can change the location of this file or turn off +// automatically serving support files with the +// 'supportFile' configuration option. +// +// You can read more here: +// https://on.cypress.io/configuration +// *********************************************************** + +// Import commands.js using ES2015 syntax: +import './commands' +import 'cypress-plugin-snapshots/commands'; \ No newline at end of file diff --git a/e2e/package.json b/e2e/package.json new file mode 100644 index 00000000..0c02df11 --- /dev/null +++ b/e2e/package.json @@ -0,0 +1,14 @@ +{ + "name": "cypress", + "version": "0.0.1", + "main": "index.js", + "license": "MIT", + "devDependencies": { + "cypress": "^12.17.2", + "cypress-plugin-snapshots": "^1.4.4", + "start-server-and-test": "^2.0.0" + }, + "scripts": { + "e2e-test": "bash run_cypress_tests.sh" + } +} diff --git a/e2e/run_cypress_tests.sh b/e2e/run_cypress_tests.sh new file mode 100755 index 00000000..b6edfe22 --- /dev/null +++ b/e2e/run_cypress_tests.sh @@ -0,0 +1,22 @@ +#!/bin/bash +set -e + +if [ "$#" -ne 1 ]; then + # Store the output of ls command in a variable + files=$(ls cypress/e2e/*.cy.js) + + # Iterate over the files using a for loop + for file in $files; do + # Spec command + command="cypress run --spec \"$file\" --record false" + # App name + app_name=$(echo "$file" | awk -F'/' '{print $NF}' | sed -e 's/\.cy\.js$//') + # Execute e2e test + yarn start-test "Rscript run_example_app.R --app=$app_name" http://127.0.0.1:8888 "$command" + done +else + spec_path="cypress/e2e/$1.cy.js" + command="cypress run --spec \"$spec_path\" --record false" + yarn start-test "Rscript run_example_app.R --app=$1" http://127.0.0.1:8888 "$command" +fi + diff --git a/e2e/run_example_app.R b/e2e/run_example_app.R new file mode 100644 index 00000000..99c52b2d --- /dev/null +++ b/e2e/run_example_app.R @@ -0,0 +1,65 @@ +# nocov start +library(optparse) +devtools::load_all() + +assert_if_app_exists <- function(app_path, app_name) { + exists <- file.exists(app_path) + if (!exists) { + stop(paste("The example application", app_name, "does not exist.")) + } + cat("Example app exists!\n") +} + +assert_if_spec_exists <- function(spec_path, app_name) { + exists <- file.exists(spec_path) + if (!exists) { + stop(paste("The e2e spec", app_name, "does not exist.")) + } + cat("Spec exists!\n") +} + +# Parsing options +option_list <- list( + make_option( + opt_str = c("-p", "--port"), + type = "character", + default = 8888, + help = "Port in which the shiny app will run [default= %default]", + metavar = "numeric" + ), + make_option( + opt_str = c("-a", "--app"), + type = "character", + default = NULL, + help = "Name of the application as it is named in the inst/examples folder", + metavar = "character" + ) +) + +# Reading options +opt_parser <- OptionParser(option_list = option_list) +opt <- parse_args(opt_parser) +app_name <- opt$app +port <- as.numeric(opt$port) + +# Defining paths +package_path <- path.package(package = "shiny.gosling") +app_path <- file.path(package_path, "inst", "examples", app_name) +spec_path <- file.path(package_path, "e2e", "cypress", "e2e", paste0(app_name, ".cy.js")) + +# Assert that the paths to the Example apps and the spec files exist +assert_if_app_exists(app_path, app_name) +assert_if_spec_exists(spec_path, app_name) + +tryCatch({ + shiny::runApp( + appDir = file.path(app_path, "app.R"), + port = as.numeric(port) + ) +}, error = function(cond) { + shiny::shinyAppDir( + appDir = app_path, + options = list(port = as.numeric(port)) + ) +}) +# nocov end diff --git a/e2e/yarn.lock b/e2e/yarn.lock new file mode 100644 index 00000000..cf878fac --- /dev/null +++ b/e2e/yarn.lock @@ -0,0 +1,2289 @@ +# THIS IS AN 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5c8e7448..842d0d14 100644 --- a/inst/examples/areaChart/app.R +++ b/inst/examples/areaChart/app.R @@ -87,7 +87,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/barChart/app.R b/inst/examples/barChart/app.R index dcf19114..4452c188 100644 --- a/inst/examples/barChart/app.R +++ b/inst/examples/barChart/app.R @@ -1,7 +1,6 @@ # Based in https://gosling.js.org/?example=doc_bar - -require(shiny) -require(shiny.gosling) +library(shiny) +library(shiny.gosling) ui <- navbarPage( title = "shiny.gosling", @@ -93,7 +92,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/circularLinearWithBrush/server.R b/inst/examples/circularLinearWithBrush/server.R index bc2239c4..cd7c92c7 100644 --- a/inst/examples/circularLinearWithBrush/server.R +++ b/inst/examples/circularLinearWithBrush/server.R @@ -47,7 +47,7 @@ circular_track1 <- add_single_track( x = circular_track1_x, xe = circular_track1_xe, y = circular_track1_y, row = circular_track1_row, color = circular_track1_color, - stroke = "black", strokeWidth = 0.3, + stroke = "black", strokeWidth = 0.3, tracks = circular_track1_tracks, style = circular_track1_styles, width = 500, height = 100 @@ -233,7 +233,6 @@ circular_linear_view <- arrange_views( ) function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "circular_component") }) diff --git a/inst/examples/circularVisualEncoding/app.R b/inst/examples/circularVisualEncoding/app.R index 1085368c..b1c16f0a 100644 --- a/inst/examples/circularVisualEncoding/app.R +++ b/inst/examples/circularVisualEncoding/app.R @@ -1,94 +1,95 @@ -if (interactive()) { - require(shiny) - require(shiny.gosling) +library(shiny) +library(shiny.gosling) - cistrome_data <- - "https://server.gosling-lang.org/api/v1/tileset_info/?d=cistrome-multivec" +cistrome_data <- + "https://server.gosling-lang.org/api/v1/tileset_info/?d=cistrome-multivec" - single_track <- add_single_track( - id = "track1", - data = track_data( - url = cistrome_data, - type = "multivec", - row = "sample", - column = "position", - value = "peak", - categories = c("sample 1", "sample 2", "sample 3", "sample 4"), - binSize = 4, +single_track <- add_single_track( + id = "track1", + data = track_data( + url = cistrome_data, + type = "multivec", + row = "sample", + column = "position", + value = "peak", + categories = c("sample 1", "sample 2", "sample 3", "sample 4"), + binSize = 4, + ), + mark = "rect", + x = visual_channel_x(field = "start", type = "genomic", axis = "top"), + xe = visual_channel_x(field = "end", type = "genomic"), + row = visual_channel_row( + field = "sample", + type = "nominal", + legend = TRUE + ), + color = visual_channel_color( + field = "peak", + type = "quantitative", + legend = TRUE + ), + tooltip = visual_channel_tooltips( + visual_channel_tooltip( + field = "start", type = "genomic", + alt = "Start Position" ), - mark = "rect", - x = visual_channel_x(field = "start", type = "genomic", axis = "top"), - xe = visual_channel_x(field = "end", type = "genomic"), - row = visual_channel_row( - field = "sample", - type = "nominal", - legend = TRUE + visual_channel_tooltip( + field = "end", type = "genomic", + alt = "End Position" ), - color = visual_channel_color( + visual_channel_tooltip( field = "peak", type = "quantitative", - legend = TRUE - ), - tooltip = visual_channel_tooltips( - visual_channel_tooltip(field = "start", type = "genomic", - alt = "Start Position"), - visual_channel_tooltip(field = "end", type = "genomic", - alt = "End Position"), - visual_channel_tooltip( - field = "peak", - type = "quantitative", - alt = "Value", - format = "0.2" - ) - ), - width = 600, - height = 130 - ) + alt = "Value", + format = "0.2" + ) + ), + width = 600, + height = 130 +) - single_composed_track <- compose_view( - tracks = single_track - ) +single_composed_track <- compose_view( + tracks = single_track +) - single_composed_views <- arrange_views( - title = "Single Track", - subtitle = "This is the simplest single track visualization with a linear layout", - layout = "circular", #"linear" - views = single_composed_track, - xDomain = list( - chromosome = "chr1", - interval = c(1, 3000500) - ) +single_composed_views <- arrange_views( + title = "Single Track", + subtitle = "This is the simplest single track visualization with a linear layout", + layout = "circular", # "linear" + views = single_composed_track, + xDomain = list( + chromosome = "chr1", + interval = c(1, 3000500) ) +) - ui <- fluidPage( - use_gosling(), - fluidRow( - column(6, goslingOutput("gosling_plot")), - column( - 1, br(), actionButton( - "download_pdf", - "PDF", - icon = icon("cloud-arrow-down") - ) +ui <- fluidPage( + use_gosling(), + fluidRow( + column(6, goslingOutput("gosling_plot")), + column( + 1, br(), actionButton( + "download_pdf", + "PDF", + icon = icon("cloud-arrow-down") ) ) ) +) - server <- function(input, output, session) { - output$gosling_plot <- renderGosling({ - gosling( - component_id = "component_1", - single_composed_views, - clean_braces = TRUE - ) - }) - - observeEvent(input$download_pdf, { - export_pdf(component_id = "component_1") - }) - } - - shinyApp(ui, server) +server <- function(input, output, session) { + output$gosling_plot <- renderGosling({ + gosling( + component_id = "component_1", + single_composed_views, + clean_braces = TRUE + ) + }) + observeEvent(input$download_pdf, { + export_pdf(component_id = "component_1") + }) } + +shinyApp(ui, server) diff --git a/inst/examples/ideograms/app.R b/inst/examples/ideograms/app.R index ccf10713..8995c707 100644 --- a/inst/examples/ideograms/app.R +++ b/inst/examples/ideograms/app.R @@ -106,7 +106,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/lineChart/app.R b/inst/examples/lineChart/app.R index 363721dd..ff2e2ce2 100644 --- a/inst/examples/lineChart/app.R +++ b/inst/examples/lineChart/app.R @@ -87,7 +87,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/multiTrackApp/server.R b/inst/examples/multiTrackApp/server.R index 622eb6ed..3ff01821 100644 --- a/inst/examples/multiTrackApp/server.R +++ b/inst/examples/multiTrackApp/server.R @@ -23,10 +23,14 @@ single_track <- add_single_track( legend = TRUE ), tooltip = visual_channel_tooltips( - visual_channel_tooltip(field = "start", type = "genomic", - alt = "Start Position"), - visual_channel_tooltip(field = "end", type = "genomic", - alt = "End Position"), + visual_channel_tooltip( + field = "start", type = "genomic", + alt = "Start Position" + ), + visual_channel_tooltip( + field = "end", type = "genomic", + alt = "End Position" + ), visual_channel_tooltip( field = "peak", type = "quantitative", @@ -288,7 +292,6 @@ function(input, output, session) { }) observeEvent(input$layout_single, { - all_reactive_values$single_composed_views <- arrange_views( title = "Single Track", subtitle = diff --git a/inst/examples/pointPlot/app.R b/inst/examples/pointPlot/app.R index d78b051e..9686966e 100644 --- a/inst/examples/pointPlot/app.R +++ b/inst/examples/pointPlot/app.R @@ -87,7 +87,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/ruleMarks/app.R b/inst/examples/ruleMarks/app.R index 5b53ca7e..d03e2a82 100644 --- a/inst/examples/ruleMarks/app.R +++ b/inst/examples/ruleMarks/app.R @@ -152,7 +152,6 @@ multi_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/sarsCov2/server.R b/inst/examples/sarsCov2/server.R index 12a37c39..781d035b 100644 --- a/inst/examples/sarsCov2/server.R +++ b/inst/examples/sarsCov2/server.R @@ -245,19 +245,21 @@ view2_track3b <- add_single_track( ), size = 24, color = "white", - visibility = list(list( - operation = "less-than", - measure = "width", - threshold = "|xe-x|", - transitionPadding = 30, - target = "mark" - ), - list( - operation = "LT", - measure = "zoomLevel", - threshold = 40, - target = "track" - )) + visibility = list( + list( + operation = "less-than", + measure = "width", + threshold = "|xe-x|", + transitionPadding = 30, + target = "mark" + ), + list( + operation = "LT", + measure = "zoomLevel", + threshold = 40, + target = "track" + ) + ) ) view2_track3_x <- visual_channel_x( @@ -356,7 +358,6 @@ combined_view <- arrange_views( ) function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") }) diff --git a/inst/examples/staticCircularBar/app.R b/inst/examples/staticCircularBar/app.R index df550b04..af576568 100644 --- a/inst/examples/staticCircularBar/app.R +++ b/inst/examples/staticCircularBar/app.R @@ -1,97 +1,94 @@ -if (interactive()) { - require(shiny) - require(shiny.gosling) - - # Circular track 1 ---- - circular_track1_data <- track_data( - url = "https://server.gosling-lang.org/api/v1/tileset_info/?d=cistrome-multivec", - type = "multivec", - row = "sample", - column = "position", - value = "peak", - categories = c("sample 1", "sample 2", "sample 3", "sample 4"), - binSize = 4 +library(shiny) +library(shiny.gosling) + +# Circular track 1 ---- +circular_track1_data <- track_data( + url = "https://server.gosling-lang.org/api/v1/tileset_info/?d=cistrome-multivec", + type = "multivec", + row = "sample", + column = "position", + value = "peak", + categories = c("sample 1", "sample 2", "sample 3", "sample 4"), + binSize = 4 +) + +circular_track1_x <- visual_channel_x(field = "start", type = "genomic") +circular_track1_xe <- visual_channel_x(field = "end", type = "genomic") + +circular_track1_y <- visual_channel_y(field = "peak", type = "quantitative") + +circular_track1_row <- visual_channel_row( + field = "sample", type = "nominal" +) + +circular_track1_color <- visual_channel_color( + field = "sample", type = "nominal" +) + +circular_track1_tracks <- add_multi_tracks( + add_single_track( + mark = "bar" + ), + add_single_track( + mark = "brush", + x = visual_channel_x(linkingId = "detail-1"), + color = "blue" + ), + add_single_track( + mark = "brush", + x = visual_channel_x(linkingId = "detail-2"), + color = "red" ) - - circular_track1_x <- visual_channel_x(field = "start", type = "genomic") - circular_track1_xe <- visual_channel_x(field = "end", type = "genomic") - - circular_track1_y <- visual_channel_y(field = "peak", type = "quantitative") - - circular_track1_row <- visual_channel_row( - field = "sample", type = "nominal" - ) - - circular_track1_color <- visual_channel_color( - field = "sample", type = "nominal" - ) - - circular_track1_tracks <- add_multi_tracks( - add_single_track( - mark = "bar" - ), - add_single_track( - mark = "brush", - x = visual_channel_x(linkingId = "detail-1"), - color = "blue" - ), - add_single_track( - mark = "brush", - x = visual_channel_x(linkingId = "detail-2"), - color = "red" - ) - ) - - circular_track1_styles <- default_track_styles( - outlineWidth = 0 - ) - - circular_track1 <- add_single_track( - id = "circular_track1", alignment = "overlay", data = circular_track1_data, - x = circular_track1_x, xe = circular_track1_xe, - y = circular_track1_y, row = circular_track1_row, - color = circular_track1_color, - stroke = "black", strokeWidth = 0.3, - tracks = circular_track1_tracks, - style = circular_track1_styles, - width = 500, height = 100 +) + +circular_track1_styles <- default_track_styles( + outlineWidth = 0 +) + +circular_track1 <- add_single_track( + id = "circular_track1", alignment = "overlay", data = circular_track1_data, + x = circular_track1_x, xe = circular_track1_xe, + y = circular_track1_y, row = circular_track1_row, + color = circular_track1_color, + stroke = "black", strokeWidth = 0.3, + tracks = circular_track1_tracks, + style = circular_track1_styles, + width = 500, height = 100 +) + +# Compose Circular track ---- +circular_composed_view <- compose_view( + multi = TRUE, + tracks = add_multi_tracks( + circular_track1 + ), + static = TRUE, layout = "circular", alignment = "stack" +) + +# Arrange final view +circular_linear_view <- arrange_views( + arrangement = "horizontal", + views = list(circular_composed_view) +) + + + + +ui <- fluidPage( + use_gosling(), + fluidRow( + column(6, goslingOutput("gosling_plot")) ) - - # Compose Circular track ---- - circular_composed_view <- compose_view( - multi = TRUE, - tracks = add_multi_tracks( - circular_track1 - ), - static = TRUE, layout = "circular", alignment = "stack" - ) - - # Arrange final view - circular_linear_view <- arrange_views( - arrangement = "horizontal", - views = list(circular_composed_view) - ) - - +) - ui <- fluidPage( - use_gosling(), - fluidRow( - column(6, goslingOutput("gosling_plot")) +server <- function(input, output, session) { + output$gosling_plot <- renderGosling({ + gosling( + component_id = "circular_component", + circular_linear_view, clean_braces = FALSE ) - ) - - - server <- function(input, output, session) { - output$gosling_plot <- renderGosling({ - gosling( - component_id = "circular_component", - circular_linear_view, clean_braces = FALSE - ) - }) - } - - shinyApp(ui, server) - + }) } + +shinyApp(ui, server) diff --git a/inst/examples/structuralVariant/app.R b/inst/examples/structuralVariant/app.R index 1b3b32de..3002000f 100644 --- a/inst/examples/structuralVariant/app.R +++ b/inst/examples/structuralVariant/app.R @@ -1,94 +1,91 @@ -if (interactive()) { - require(shiny) - require(shiny.gosling) +library(shiny) +library(shiny.gosling) - track5_styles <- default_track_styles( - legendTitle = "SV Class" - ) - track5_data <- track_data( - url = "https://s3.amazonaws.com/gosling-lang.org/data/cancer/rearrangement.PD35930a.csv", - type = "csv", - genomicFieldsToConvert = json_list( - json_list( - chromosomeField = "chr1", - genomicFields = c("start1", "end1") - ), - json_list( - chromosomeField = "chr2", - genomicFields = c("start2", "end2") - ) - ) - ) - track5_tracks <- add_multi_tracks( - add_single_track( - mark = "rect" +track5_styles <- default_track_styles( + legendTitle = "SV Class" +) +track5_data <- track_data( + url = "https://s3.amazonaws.com/gosling-lang.org/data/cancer/rearrangement.PD35930a.csv", + type = "csv", + genomicFieldsToConvert = json_list( + json_list( + chromosomeField = "chr1", + genomicFields = c("start1", "end1") ), - add_single_track( - mark = "withinLink", x = visual_channel_x(linkingId = "mid-scale"), - strokeWidth = 0 + json_list( + chromosomeField = "chr2", + genomicFields = c("start2", "end2") ) ) - track5_color <- visual_channel_color( - field = "svclass", - type = "nominal", - legend = TRUE, - domain = json_list( - "tandem-duplication", "translocation", "deletion", "inversion" - ), - range = json_list( - "#569C4D", "#4C75A2", "#DA5456", "#EA8A2A" - ) +) +track5_tracks <- add_multi_tracks( + add_single_track( + mark = "rect" + ), + add_single_track( + mark = "withinLink", x = visual_channel_x(linkingId = "mid-scale"), + strokeWidth = 0 ) - track5_stroke <- visual_channel_stroke( - field = "svclass", - type = "nominal", - domain = json_list( - "tandem-duplication", "translocation", "deletion", "inversion" - ), - range = json_list( - "#569C4D", "#4C75A2", "#DA5456", "#EA8A2A" - ) +) +track5_color <- visual_channel_color( + field = "svclass", + type = "nominal", + legend = TRUE, + domain = json_list( + "tandem-duplication", "translocation", "delection", "inversion" + ), + range = json_list( + "#569C4D", "#4C75A2", "#DA5456", "#EA8A2A" ) - track5_x <- visual_channel_x(field = "start1", type = "genomic") - track5_xe <- visual_channel_x(field = "end2", type = "genomic") - track5 <- add_single_track( - id = "track5", title = "Structural Variant", - data = track5_data, mark = "withinLink", - x = track5_x, xe = track5_xe, - color = track5_color, width = 500, height = 80, stroke = track5_stroke, - strokeWidth = 1, opacity = 0.6, style = track5_styles +) +track5_stroke <- visual_channel_stroke( + field = "svclass", + type = "nominal", + domain = json_list( + "tandem-duplication", "translocation", "delection", "inversion" + ), + range = json_list( + "#569C4D", "#4C75A2", "#DA5456", "#EA8A2A" ) +) +track5_x <- visual_channel_x(field = "start1", type = "genomic") +track5_xe <- visual_channel_x(field = "end2", type = "genomic") +track5 <- add_single_track( + id = "track5", title = "Structural Variant", + data = track5_data, mark = "withinLink", + x = track5_x, xe = track5_xe, + color = track5_color, width = 500, height = 80, stroke = track5_stroke, + strokeWidth = 1, opacity = 0.6, style = track5_styles +) - composed_track <- compose_view( - multi = TRUE, - tracks = add_multi_tracks( - track5 - ), - xOffset = 190, layout = "circular", spacing = 1 - ) +composed_track <- compose_view( + multi = TRUE, + tracks = add_multi_tracks( + track5 + ), + xOffset = 190, layout = "circular", spacing = 1 +) - composed_views <- arrange_views( - views = composed_track, - arrangement = "vertical" - ) +composed_views <- arrange_views( + views = composed_track, + arrangement = "vertical" +) - ui <- fluidPage( - use_gosling(), - fluidRow( - column(6, goslingOutput("gosling_plot")) - ) +ui <- fluidPage( + use_gosling(), + fluidRow( + column(6, goslingOutput("gosling_plot")) ) +) - server <- function(input, output, session) { - output$gosling_plot <- renderGosling({ - gosling( - component_id = "component_2", - composed_views, clean_braces = FALSE - ) - }) - } - - shinyApp(ui, server) - +server <- function(input, output, session) { + output$gosling_plot <- renderGosling({ + gosling( + component_id = "component_2", + composed_views, clean_braces = FALSE + ) + }) } + +shinyApp(ui, server) diff --git a/inst/examples/textAnnotation/app.R b/inst/examples/textAnnotation/app.R index c66ccba5..dbfb7d29 100644 --- a/inst/examples/textAnnotation/app.R +++ b/inst/examples/textAnnotation/app.R @@ -1,43 +1,43 @@ -if (interactive()) { - require(shiny) - require(shiny.gosling) +library(shiny) +library(shiny.gosling) - # View 2 Track 3---- - view2_track3_data <- track_data( - url = "https://server.gosling-lang.org/api/v1/tileset_info/?d=NC_045512_2-multivec", - type = "multivec", - row = "base", - column = "position", - value = "count", - categories = c("A", "T", "G", "C"), - start = "start", - end = "end" - ) +# View 2 Track 3---- +view2_track3_data <- track_data( + url = "https://server.gosling-lang.org/api/v1/tileset_info/?d=NC_045512_2-multivec", + type = "multivec", + row = "base", + column = "position", + value = "count", + categories = c("A", "T", "G", "C"), + start = "start", + end = "end" +) - view2_track3a <- add_single_track( - mark = "bar", - y = visual_channel_y( - field = "count", type = "quantitative", axis = "none" - ) +view2_track3a <- add_single_track( + mark = "bar", + y = visual_channel_y( + field = "count", type = "quantitative", axis = "none" ) +) - view2_track3b <- add_single_track( - dataTransform = track_data_transform( - type = "filter", - field = "count", - oneOf = list(0), - not = TRUE - ), - mark = "text", - x = visual_channel_x( - field = "start", type = "genomic" - ), - xe = visual_channel_x( - field = "end", type = "genomic" - ), - size = 24, - color = "white", - visibility = list(list( +view2_track3b <- add_single_track( + dataTransform = track_data_transform( + type = "filter", + field = "count", + oneOf = list(0), + not = TRUE + ), + mark = "text", + x = visual_channel_x( + field = "start", type = "genomic" + ), + xe = visual_channel_x( + field = "end", type = "genomic" + ), + size = 24, + color = "white", + visibility = list( + list( operation = "less-than", measure = "width", threshold = "|xe-x|", @@ -49,80 +49,79 @@ if (interactive()) { measure = "zoomLevel", threshold = 40, target = "track" - )) + ) ) +) - view2_track3_x <- visual_channel_x( - field = "position", type = "genomic" - ) +view2_track3_x <- visual_channel_x( + field = "position", type = "genomic" +) - view2_track3_color <- visual_channel_color( - field = "base", - type = "nominal", - domain = c("A", "T", "G", "C"), - legend = TRUE - ) +view2_track3_color <- visual_channel_color( + field = "base", + type = "nominal", + domain = c("A", "T", "G", "C"), + legend = TRUE +) - view2_track3_text <- visual_channel_text( - field = "base", type = "nominal" - ) +view2_track3_text <- visual_channel_text( + field = "base", type = "nominal" +) - view2_track3_style <- default_track_styles( - inlineLegend = TRUE - ) +view2_track3_style <- default_track_styles( + inlineLegend = TRUE +) - view2_track3 <- add_single_track( - title = "NC_045512.2 Sequence", - alignment = "overlay", - data = view2_track3_data, - tracks = add_multi_tracks( - view2_track3a, view2_track3b - ), - x = view2_track3_x, - color = view2_track3_color, - text = view2_track3_text, - style = view2_track3_style, - width = 800, height = 40 - ) +view2_track3 <- add_single_track( + title = "NC_045512.2 Sequence", + alignment = "overlay", + data = view2_track3_data, + tracks = add_multi_tracks( + view2_track3a, view2_track3b + ), + x = view2_track3_x, + color = view2_track3_color, + text = view2_track3_text, + style = view2_track3_style, + width = 800, height = 40 +) - view2 <- compose_view( - multi = TRUE, - centerRadius = 0, - xDomain = list(interval = c(1, 29903)), - linkingId = "detail", - alignment = "stack", - tracks = add_multi_tracks( - view2_track3 - ) +view2 <- compose_view( + multi = TRUE, + centerRadius = 0, + xDomain = list(interval = c(1, 29903)), + linkingId = "detail", + alignment = "stack", + tracks = add_multi_tracks( + view2_track3 ) +) - combined_view <- arrange_views( - title = "SARS-CoV-2", - subtitle = "Data Source: WashU Virus Genome Browser, NCBI, GISAID", - assembly = list(list("NC_045512.2", 29903)), - layout = "linear", - spacing = 50, - views = list(view2), - listify = FALSE - ) +combined_view <- arrange_views( + title = "SARS-CoV-2", + subtitle = "Data Source: WashU Virus Genome Browser, NCBI, GISAID", + assembly = list(list("NC_045512.2", 29903)), + layout = "linear", + spacing = 50, + views = list(view2), + listify = FALSE +) - ui <- fluidPage( - use_gosling(), - fluidRow( - column(6, goslingOutput("gosling_plot")) - ) +ui <- fluidPage( + use_gosling(), + fluidRow( + column(6, goslingOutput("gosling_plot")) ) +) - server <- function(input, output, session) { - output$gosling_plot <- renderGosling({ - gosling( - component_id = "sars_cov2", - combined_view - ) - }) - } - - shinyApp(ui, server) - +server <- function(input, output, session) { + output$gosling_plot <- renderGosling({ + gosling( + component_id = "sars_cov2", + combined_view + ) + }) } + +shinyApp(ui, server) diff --git a/inst/examples/textMarks/app.R b/inst/examples/textMarks/app.R index 3d3be4cf..d35f0cff 100644 --- a/inst/examples/textMarks/app.R +++ b/inst/examples/textMarks/app.R @@ -102,7 +102,6 @@ single_composed_views <- arrange_views( ) server <- function(input, output, session) { - observeEvent(input$download_png, { export_png(component_id = "sars_cov2") })