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@BIMSBbioinfo

BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 252 33

  2. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 73 22

  3. compgen2021 compgen2021 Public

    R 73 23

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 48 20

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 43 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 38 9

Repositories

Showing 10 of 101 repositories
  • ZarrArray Public

    Zarr backend for DelayedArray objects

    BIMSBbioinfo/ZarrArray’s past year of commit activity
    R 2 1 3 0 Updated Sep 28, 2024
  • CompassDock Public

    Official Implementation of CompassDock

    BIMSBbioinfo/CompassDock’s past year of commit activity
    Python 6 0 0 0 Updated Sep 27, 2024
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 38 9 2 0 Updated Sep 23, 2024
  • pigx_rnaseq Public

    Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

    BIMSBbioinfo/pigx_rnaseq’s past year of commit activity
    Python 21 GPL-3.0 12 22 0 Updated Sep 13, 2024
  • BIMSBbioinfo/mergenstudio’s past year of commit activity
    R 4 1 0 0 Updated Sep 13, 2024
  • pigx_bsseq Public

    bisulfite sequencing pipeline from fastq to methylation reports

    BIMSBbioinfo/pigx_bsseq’s past year of commit activity
    Python 11 GPL-3.0 4 45 0 Updated Sep 12, 2024
  • mergen Public

    AI-Driven Code Generation, Explanation and Execution for Data Analysis

    BIMSBbioinfo/mergen’s past year of commit activity
    R 11 2 0 0 Updated Sep 11, 2024
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 21 4 10 0 Updated Sep 6, 2024
  • BIMSBbioinfo/oncotrialLLM’s past year of commit activity
    Python 1 0 0 0 Updated Sep 3, 2024
  • flexynesis_manuscript Public

    All publication material relevant for the manuscript describing the flexynesis software package

    BIMSBbioinfo/flexynesis_manuscript’s past year of commit activity
    R 1 0 0 0 Updated Aug 13, 2024

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