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TreeNodeClass.m
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TreeNodeClass.m
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classdef TreeNodeClass < handle
properties % (Access = private)
name;
type;
iGroup;
iSubj;
iSess;
iRun;
iFile;
children;
acquired;
procStream;
err;
CondNames;
updateParentGui;
end
properties
inputVars
DEBUG
path
logger
pathOutputAlt
outputDirname
cfg
chVis
hFig
end
methods
% ---------------------------------------------------------------------------------
function obj = TreeNodeClass(arg)
global logger
global cfg
logger = InitLogger(logger, 'TreeNodeClass');
cfg = InitConfig(cfg);
obj.logger = logger;
obj.cfg = cfg;
obj.DEBUG = 0;
obj.name = '';
obj.iGroup = 0;
obj.iSubj = 0;
obj.iSess = 0;
obj.iRun = 0;
obj.type = '';
obj.procStream = ProcStreamClass();
obj.acquired = [];
obj.err = 0;
obj.CondNames = {};
obj.path = filesepStandard(pwd);
obj.outputDirname = filesepStandard(obj.cfg.GetValue('Output Folder Name'), 'nameonly:dir');
obj.InitParentAppFunc();
obj.children = [];
obj.hFig = [-1; -1];
% If this constructor is called from this class' copy method,
% then we want to exit before we obliterate the persistent
% variables (only one copy of which is shared across all objects
% of this class, like a static var in C++).
%
% Essentially if a copy arg is passed this constructor
% is used as a copy constructor (to borrow C++ terminology)
%
if nargin==1
if iscell(arg) && ~isempty(arg)
arg = arg{1};
end
if ischar(arg) && strcmp(arg,'copy')
return;
end
end
obj.CondColTbl('init');
obj.GroupDataLoadWarnings();
end
end
methods
% ---------------------------------------------------------------------------------
function err = LoadProcStreamConfigFile(obj, filename)
err = obj.procStream.LoadConfigFile(filename, class(obj));
end
% ---------------------------------------------------------------------------------
function SaveProcStreamConfigFile(obj, filename)
obj.procStream.SaveConfigFile(filename, class(obj));
end
% ---------------------------------------------------------------------------------
function CreateProcStreamDefault(obj)
obj.procStream.CreateDefault()
end
% ---------------------------------------------------------------------------------
function procStream = GetProcStreamDefault(obj)
procStream = obj.procStream.GetDefault(class(obj));
end
end
methods
% ----------------------------------------------------------------------------------
% Override == operator:
% ----------------------------------------------------------------------------------
function B = eq(obj1, obj2)
B = equivalent(obj1, obj2);
end
% ----------------------------------------------------------------------------------
% Override ~= operator
% ----------------------------------------------------------------------------------
function B = ne(obj1, obj2)
B = ~equivalent(obj1, obj2);
end
% ----------------------------------------------------------------------------------
% Copy function to do deep copy
% ----------------------------------------------------------------------------------
function objnew = copy(obj)
switch(class(obj))
case 'RunClass'
objnew = RunClass('copy');
case 'SessClass'
objnew = SessClass('copy');
case 'SubjClass'
objnew = SubjClass('copy');
case 'GroupClass'
objnew = GroupClass('copy');
case ''
end
objnew.name = obj.name;
objnew.type = obj.type;
objnew.err = obj.err;
objnew.CondNames = obj.CondNames;
objnew.procStream.Copy(obj.procStream, obj.GetOutputFilename);
end
% ----------------------------------------------------------------------------------
% Copy processing params (procInut and procResult) from
% obj2 to obj
% ----------------------------------------------------------------------------------
function Copy(obj, obj2, conditional)
if nargin==2 || strcmp(conditional, 'unconditional')
obj.name = obj2.name;
obj.path = obj2.path;
obj.outputDirname = obj2.outputDirname;
obj.type = obj2.type;
obj.iGroup = obj2.iGroup;
obj.iSubj = obj2.iSubj;
obj.iSess = obj2.iSess;
obj.iRun = obj2.iRun;
obj.CondNames = obj2.CondNames;
switch(class(obj2.children))
case 'SubjClass'
obj.children = obj.subjs;
case 'SessClass'
obj.children = obj.sess;
case 'RunClass'
obj.children = obj.runs;
end
end
if ~isempty(obj2.procStream)
[pathname, filename] = fileparts([obj.path, obj.GetOutputFilename()]);
% Recreate the same relative dir structure under derived output
% folder as exists directly under the group folder
if ispathvalid([filesepStandard(obj.path), obj.name], 'dir')
pathname = [filesepStandard(pathname), filename];
end
obj.procStream.SaveInitOutput(pathname, filename);
obj.procStream.Copy(obj2.procStream, [obj.path, obj.GetOutputFilename()]);
end
end
% ----------------------------------------------------------------------------------
function Reset(obj)
global cfg
obj.procStream.output.Reset([obj.path, obj.GetOutputFilename()]);
delete([obj.path, obj.GetOutputFilename(), '*.txt']);
delete([obj.path, 'tCCAfilter_*.txt'])
v = '';
if ~isempty(cfg)
v = cfg.GetValue('Include Archived User Functions');
end
if strcmpi(v, 'yes')
delete([obj.path, '*_events.tsv'])
end
end
% ----------------------------------------------------------------------------------
%
% ----------------------------------------------------------------------------------
function options_s = parseSaveOptions(~, options)
options_s = struct('derived',false, 'acquired',false);
C = str2cell(options, {':',',','+',' '});
for ii=1:length(C)
if isproperty(options_s, C{ii})
eval( sprintf('options_s.%s = true;', C{ii}) );
end
end
end
% ----------------------------------------------------------------------------------
function InitParentAppFunc(obj)
global maingui
if isfield(maingui, 'Update')
obj.updateParentGui = maingui.Update;
end
end
% ----------------------------------------------------------------------------------
function SetIndexID(obj, iGroup, iSubj, iSess, iRun)
if nargin>1
obj.iGroup = iGroup;
end
if nargin>2
obj.iSubj = iSubj;
end
if nargin>3
obj.iSess = iSess;
end
if nargin>4
obj.iRun = iRun;
end
end
% ----------------------------------------------------------
function idx = FindProcElem(obj, name)
idx = [];
if strcmp(name, obj.GetName())
idx = obj.GetIndexID();
return;
end
if strcmp(name, obj.GetFilename())
idx = obj.GetIndexID();
return;
end
for ii = 1:length(obj.children)
if strcmp(name, obj.children(ii).GetName())
idx = obj.children(ii).GetIndexID();
return;
end
if strcmp(name, obj.children(ii).GetFilename())
idx = obj.children(ii).GetIndexID();
return;
end
idx = obj.children(ii).FindProcElem(name);
if ~isempty(idx)
return;
end
end
end
% ----------------------------------------------------------------------------------
function SetPath(obj, dirname)
obj.path = dirname;
% In case there's not enough disk space in the current
% group folder, we have a alternative path that can be
% set independently for saving group results. By default
% it is set to root group folder.
obj.pathOutputAlt = obj.path;
end
% ----------------------------------------------------------------------------------
function SetPathOutput(obj, dirname)
% In case there's not enough disk space in the current
% group folder, we have a alternative path that can be
% set independently for saving group results. By default
% it is set to root group folder.
obj.pathOutputAlt = dirname;
end
% ----------------------------------------------------------------------------------
function SetProcFlag(obj)
if obj.procStream.output.IsEmpty()
return;
end
if isa(obj, 'GroupClass')
obj.GroupsProcFlags(obj.iGroup, 1);
elseif isa(obj, 'SubjClass')
obj.SubjsProcFlags(obj.iGroup, obj.iSubj, 1);
elseif isa(obj, 'SessClass')
obj.SubjsProcFlags(obj.iGroup, obj.iSubj, obj.iSess, 1);
elseif isa(obj, 'RunClass')
obj.RunsProcFlags(obj.iGroup, obj.iSubj, obj.iSess, obj.iRun, 1);
end
end
% ----------------------------------------------------------------------------------
function idx = GetIndexID(obj)
idx = [obj.iGroup, obj.iSubj, obj.iSess, obj.iRun];
end
% ----------------------------------------------------------------------------------
function b = IsGroup(obj)
if strcmp('group', obj.type)
b = true;
else
b = false;
end
end
% ----------------------------------------------------------------------------------
function b = IsSubj(obj)
if strcmp('subj', obj.type)
b = true;
else
b = false;
end
end
% ----------------------------------------------------------------------------------
function b = IsSess(obj)
if strcmp('sess', obj.type)
b = true;
else
b = false;
end
end
% ----------------------------------------------------------------------------------
function b = IsRun(obj)
if strcmp('run', obj.type)
b = true;
else
b = false;
end
end
% ----------------------------------------------------------------------------------
function b = IsSame(obj, iGroup, iSubj, iSess, iRun)
b = false;
if isempty(obj)
return;
end
if iGroup==obj.iGroup && iSubj==obj.iSubj && iSess==obj.iSess && iRun==obj.iRun
b = true;
end
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Methods for setting/getting TreeNode procStream output
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
methods
% ----------------------------------------------------------------------------------
function t = GetTHRF(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
t = obj.procStream.output.GetTHRF(iBlk);
end
% ----------------------------------------------------------------------------------
function d = GetRawData(~)
d = [];
end
% ----------------------------------------------------------------------------------
function dod = GetDod(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dod = obj.procStream.output.GetDataTimeCourse('dod',iBlk);
end
% ----------------------------------------------------------------------------------
function dc = GetDc(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dc = obj.procStream.output.GetDataTimeCourse('dc',iBlk);
end
% ----------------------------------------------------------------------------------
function dodAvg = GetDodAvg(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
icond = 1:length(obj.GetConditions());
elseif ischar(condition)
icond = obj.GetConditionIdx(condition);
else
icond = condition;
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dodAvg = obj.procStream.output.GetDodAvg('dodAvg', icond, iBlk);
end
% ----------------------------------------------------------------------------------
function dcAvg = GetDcAvg(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
icond = 1:length(obj.GetConditions());
elseif ischar(condition)
icond = obj.GetConditionIdx(condition);
else
icond = condition;
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dcAvg = obj.procStream.output.GetDcAvg('dcAvg', icond, iBlk);
end
% ----------------------------------------------------------------------------------
function dodAvgStd = GetDodAvgStd(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
condition = 1:length(obj.GetConditions());
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dodAvgStd = obj.procStream.output.GetDodAvg('dodAvgStd', condition, iBlk);
end
% ----------------------------------------------------------------------------------
function dcAvgStd = GetDcAvgStd(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
condition = 1:length(obj.GetConditions());
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dcAvgStd = obj.procStream.output.GetDcAvg('dcAvgStd', condition, iBlk);
end
% ----------------------------------------------------------------------------------
function dodSum2 = GetDodSum2(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
condition = 1:length(obj.GetConditions());
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dodSum2 = obj.procStream.output.GetDodSum2('dodSum2', condition, iBlk);
end
% ----------------------------------------------------------------------------------
function dcSum2 = GetDcSum2(obj, condition, iBlk)
if ~exist('condition','var') || isempty(condition)
condition = 1:length(obj.GetConditions());
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk=1;
end
dcSum2 = obj.procStream.output.GetDcSum2('dcSum2', condition, iBlk);
end
% ----------------------------------------------------------------------------------
function nTrials = GetNtrials(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
nTrials = obj.procStream.output.GetNtrials(iBlk);
end
% ----------------------------------------------------------------------------------
function pValues = GetPvalues(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = [];
end
pValues = obj.procStream.output.GetVar('pValues');
if ~isempty(iBlk) && iBlk<=length(pValues)
pValues = pValues{iBlk};
end
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Methods for retrieving TreeNode params
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
methods
% ----------------------------------------------------------------------------------
function s = GetStims(~, ~)
s = [];
end
% ----------------------------------------------------------------------------------
function ReloadStim(obj)
% Update call application GUI using it's generic Update function
if ~isempty(obj.updateParentGui)
obj.updateParentGui('DataTreeClass', [obj.iGroup, obj.iSubj, obj.iSess, obj.iRun]);
end
for ii = 1:length(obj.children)
obj.children(ii).ReloadStim();
end
pause(.5);
end
% ----------------------------------------------------------------------------------
function fnameTsv = GetStimTsvFilename(obj)
fnameTsv = [];
if isempty(obj.acquired)
return;
end
fnameTsv = obj.acquired.GetStimTsvFilename();
end
% ----------------------------------------------------------------------------------
function EditStim(obj, waitForInput)
if ~exist('waitForInput','var')
waitForInput = 0;
end
if isempty(obj.acquired)
MenuBox(sprintf('%s level processing does not have stims. Please select a run to edit stim marks\n', [upper(obj.type(1)), obj.type(2:end)]));
return;
end
filenameData = [obj.path, obj.GetFilename()];
% From data file name get events TSV file and load in matlab editor
filenameEvents = obj.GetStimTsvFilename();
if ~ispathvalid(filenameEvents)
obj.logger.Write('Events TSV file for %s doesn''t exist.\n', filenameData);
obj.ExportStim();
end
obj.logger.Write('Editing %s\n', filenameEvents);
% Edit commands
if ~isdeployed()
edit(filenameEvents);
editorTabs = matlab.desktop.editor.getAll;
% Search for editor tab containing loaded file and make it active
for ii = 1:length(editorTabs)
if pathscompare(editorTabs(ii).Filename, filenameEvents)
break
end
end
editorTab = editorTabs(ii);
editorTab.makeActive;
if waitForInput
MenuBox('Please edit TSV stim file and save it, then click the ''OK'' button.');
end
else
if ispc()
cmd = sprintf('start notepad %s', filenameEvents);
obj.logger.Write('cmd: "%s"', cmd);
system(cmd);
elseif ismac()
cmd = sprintf('open -a TextEdit %s', filenameEvents);
obj.logger.Write('cmd: "%s"', cmd);
system(cmd);
if waitForInput
MenuBox(sprintf('The events file associated with the current processing element is\n%s\n Open the file in a text editor to modify stim marks', filenameEvents));
end
end
end
end
% --------------------------------------------------------------
function CopyStimAcquired(obj)
obj.procStream.CopyStims(obj.acquired);
end
% ----------------------------------------------------------------------------------
function CondNames = GetConditions(obj)
CondNames = obj.CondNames;
end
% ----------------------------------------------------------------------------------
function RenameCondition(obj, oldname, newname)
% Function to rename a condition. Important to remeber that changing the
% condition involves 2 distinct well defined steps:
% a) For the current element change the name of the specified (old)
% condition for ONLY for ALL the acquired data elements under the
% currElem, be it session, subj, or group . In this step we DO NOT TOUCH
% the condition names of the session, subject or group .
% b) Rebuild condition names and tables of all the tree nodes group, subjects
% and sessions same as if you were loading during Homer3 startup from the
% acquired data.
%
if ~exist('oldname','var') || ~ischar(oldname)
return;
end
if ~exist('newname','var') || ~ischar(newname)
return;
end
newname = obj.ErrCheckNewCondName(newname);
if obj.err ~= 0
return;
end
for ii = 1:length(obj.children)
obj.children(ii).RenameCondition(oldname, newname);
end
end
% ----------------------------------------------------------------------------------
function idx = GetConditionIdx(obj, CondName)
C = obj.GetConditions();
idx = find(strcmp(C, CondName));
end
% ----------------------------------------------------------------------------------
function SD = GetSDG(obj, option)
if exist('option','var')
SD = obj.runs(1).GetSDG(option);
else
SD = obj.runs(1).GetSDG();
end
end
% ----------------------------------------------------------------------------------
function srcpos = GetSrcPos(obj, options)
srcpos = [];
if exist('options','var')
options = '';
end
if isempty(obj.children)
return;
end
srcpos = obj.children(1).GetSrcPos(options);
end
% ----------------------------------------------------------------------------------
function detpos = GetDetPos(obj, options)
detpos = [];
if exist('options','var')
options = '';
end
if isempty(obj.children)
return;
end
detpos = obj.children(1).GetDetPos(options);
end
% ---------------------------------------------------------
function ml = GetMeasurementList(obj, matrixMode, iBlk, dataType)
if ~exist('matrixMode','var')
matrixMode = '';
end
if ~exist('dataType','var')
dataType = 'raw';
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
switch(lower(dataType))
case 'raw'
if isempty(obj.acquired)
ml = obj.children(1).GetMeasurementList(matrixMode, iBlk); %#ok<*AGROW>
else
ml = obj.acquired.GetMeasurementList(matrixMode, iBlk); %#ok<*AGROW>
end
otherwise
ml = obj.procStream.GetMeasurementList(matrixMode, iBlk, dataType);
end
end
% ---------------------------------------------------------
function [d, t, ml] = GetData(obj, datatype, iBlk)
d = [];
t = [];
ml = [];
datatypes = obj.procStream.GetDataTypes();
if ~exist('datatype','var')
datatype = 'raw';
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
switch(lower(datatype))
case datatypes.RAW
if isempty(obj.acquired)
return
end
[d, t] = obj.acquired.GetData(); %#ok<*AGROW>
ml = obj.acquired.GetMeasurementList('matrix',iBlk);
case datatypes.OPTICAL_DENSITY
[d, t] = obj.procStream.GetData('od');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od');
case datatypes.CONCENTRATION
[d, t] = obj.procStream.GetData('conc');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc');
case datatypes.HRF_OPTICAL_DENSITY
[d, t] = obj.procStream.GetData('od hrf');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od hrf');
case datatypes.HRF_OPTICAL_DENSITY_STD
[d, t] = obj.procStream.GetData('od hrf std');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od hrf std');
case datatypes.HRF_CONCENTRATION
[d, t] = obj.procStream.GetData('conc hrf');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc hrf');
case datatypes.HRF_CONCENTRATION_STD
[d, t] = obj.procStream.GetData('conc hrf std');
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc hrf std');
end
end
% ---------------------------------------------------------
function [d, t, ml] = GetDataTimeSeries(obj, datatype, iBlk)
d = [];
t = [];
ml = [];
datatypes = obj.procStream.GetDataTypes();
if ~exist('datatype','var')
datatype = 'RAW';
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
switch(lower(datatype))
case datatypes.RAW
if isempty(obj.acquired)
return
end
[d, t] = obj.acquired.GetDataTimeSeries(iBlk); %#ok<*AGROW>
ml = obj.acquired.GetMeasurementList('matrix',iBlk);
case datatypes.OPTICAL_DENSITY
[d, t] = obj.procStream.GetDataTimeSeries('od',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od');
case datatypes.CONCENTRATION
[d, t] = obj.procStream.GetDataTimeSeries('conc',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc');
case datatypes.HRF_OPTICAL_DENSITY
[d, t] = obj.procStream.GetDataTimeSeries('od hrf',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od hrf');
case datatypes.HRF_OPTICAL_DENSITY_STD
[d, t] = obj.procStream.GetDataTimeSeries('od hrf std',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'od hrf std');
case datatypes.HRF_CONCENTRATION
[d, t] = obj.procStream.GetDataTimeSeries('conc hrf',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc hrf');
case datatypes.HRF_CONCENTRATION_STD
[d, t] = obj.procStream.GetDataTimeSeries('conc hrf std',iBlk);
ml = obj.procStream.GetMeasurementList('matrix',iBlk,'conc hrf std');
end
end
% -----------------------------------------------------------------------
function [md2d, md3d] = GetChannelsMeanDistance(obj)
md2d = [];
md3d = [];
if isempty(obj.acquired)
return;
end
[md2d, md3d] = obj.acquired.GetChannelsMeanDistance();
end
% ----------------------------------------------------------------------------------
function ch = GetMeasList(obj, options, iBlk)
if ~exist('options','var')
options = '';
end
if ~exist('iBlk','var')
iBlk = 1;
end
% The following code is for calculating and displaying pruned channels
% (mlActAuto) in higher processing levels: Group, Subject, and Session
% It works well to for identifying inactive channels BUT is
% very slow the higher the level (thus is slowest when displaying group probe)
% So for now commenting out until it can be optimized. In other
% words we set mlAct display at the Group, Subject, and Session to all
% active for now, until it can be optimized. NOTE: this will NOT have an effect on
% processing as mlActAuto is only used at the run level
% processing. Channel pruning at the higher level is a natural consequence
% of inactive run channels being set to NaN and so on up the processing chain
% jdubb, 08/17/2022
if 0
for ii = 1:length(obj.children) %#ok<UNRCH>
if isempty(ch)
ch = obj.children(ii).GetMeasList(iBlk);
else
temp = obj.children(ii).GetMeasList(iBlk);
if length(ch.MeasListActMan) == length(temp.MeasListActMan)
ch.MeasListActMan = ch.MeasListActMan | temp.MeasListActMan;
end
if length(ch.MeasListActAuto) == length(temp.MeasListActAuto)
ch.MeasListActAuto = ch.MeasListActAuto | temp.MeasListActAuto;
end
end
end
else
ch = obj.children(1).GetMeasList(iBlk);
if strcmp(options,'reshape')
ch.MeasList = sortrows(ch.MeasList);
end
ch.MeasListActMan(:,3) = 1;
ch.MeasListActAuto(:,3) = 1;
end
end
% ----------------------------------------------------------------------------------
function mlAct = GetActiveChannels(obj)
mlAct = [];
for ii = 1:length(obj.children)
m = obj.children(1).GetActiveChannels();
if isempty(m)
continue;
end
if isempty(mlAct)
mlAct = m;
else
mlAct(:,3) = mlAct(:,3) | m(:,3);
end
end
end
% ----------------------------------------------------------------------------------
function SetMeasListActMan(obj, ml)
if ~exist('ml','var')
ml = [];
end
obj.procStream.input.SetMeasListActMan(ml);
end
% ----------------------------------------------------------------------------------
function SetMeasListVis(obj, sdpair, iBlk)
if ~exist('sdpair','var')
sdpair = [];
end
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
if ~isempty(obj.children)
ch = obj.children(1).GetMeasList(iBlk);
else
ch = obj.GetMeasList(iBlk);
end
if isempty(sdpair)
idxs = find(ch.MeasList(:,4)==1);
obj.chVis = [ch.MeasList(idxs,1:2), ones(size(idxs,1),1)];
else
k = find(obj.chVis(:,1) == sdpair(1,1) & obj.chVis(:,2) == sdpair(1,2));
if ~isempty(k)
if obj.chVis(k,3) == 0
obj.chVis(k,3) = 1;
else
obj.chVis(k,3) = 0;
end
end
end
end
% ----------------------------------------------------------------------------------
function chVis = GetMeasListVis(obj, iBlk)
if ~exist('iBlk','var') || isempty(iBlk)
iBlk = 1;
end
if isempty(obj.chVis)
if ~isempty(obj.children)
ch = obj.children(1).GetMeasList(iBlk);
else
ch = obj.GetMeasList(iBlk);
end
idxs = find(ch.MeasList(:,4)==1);
obj.chVis = [ch.MeasList(idxs,1:2), ones(size(idxs,1),1)];
end
chVis = obj.chVis;
end
% ----------------------------------------------------------------------------------
function varval = GetVar(obj, varname)
varval = [];
if isproperty(obj, varname)
varval = eval( sprintf('obj.%s', varname) );
end
if isempty(varval)
varval = obj.procStream.GetVar(varname);
end
end
% ----------------------------------------------------------------------------------
function AddStims(~, ~, ~)
return;
end
% ----------------------------------------------------------------------------------
function DeleteStims(~, ~)
return;
end
% ----------------------------------------------------------------------------------
function ToggleStims(~, ~)
return;
end
% ----------------------------------------------------------------------------------
function SetStimDuration(~, ~, ~)
return;
end
% ----------------------------------------------------------------------------------
function duration = GetStimDuration(~, ~)
duration = [];
end
% ----------------------------------------------------------------------------------
function data = GetStimData(~, ~)
data = [];
end
% ----------------------------------------------------------------------------------
function val = GetStimDataLabels(~, ~)