From 5e23daa76595953979c5879c30f9fc353c578335 Mon Sep 17 00:00:00 2001
From: KrystynaGrzesiak <krygrz11@gmail.com>
Date: Wed, 24 Jul 2024 18:47:10 +0200
Subject: [PATCH] struggles with renv

---
 renv.lock | 86 ++++++++++++++++++++++++++++++++++++++-----------------
 1 file changed, 60 insertions(+), 26 deletions(-)

diff --git a/renv.lock b/renv.lock
index 5bc65e6..bc3f853 100644
--- a/renv.lock
+++ b/renv.lock
@@ -41,7 +41,7 @@
     },
     "Biobase": {
       "Package": "Biobase",
-      "Version": "2.60.0",
+      "Version": "2.62.0",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -49,11 +49,11 @@
         "methods",
         "utils"
       ],
-      "Hash": "ed269b250f5844d54dfdc7e749f901aa"
+      "Hash": "38252a34e82d3ff6bb46b4e2252d2dce"
     },
     "BiocGenerics": {
       "Package": "BiocGenerics",
-      "Version": "0.46.0",
+      "Version": "0.48.1",
       "Source": "Bioconductor",
       "Requirements": [
         "R",
@@ -62,7 +62,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "c179ae59955c36f5d0068ed29ce832f7"
+      "Hash": "e34278c65d7dffcc08f737bf0944ca9a"
     },
     "BiocManager": {
       "Package": "BiocManager",
@@ -85,7 +85,7 @@
     },
     "DelayedArray": {
       "Package": "DelayedArray",
-      "Version": "0.26.7",
+      "Version": "0.28.0",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -95,11 +95,12 @@
         "R",
         "S4Arrays",
         "S4Vectors",
+        "SparseArray",
         "methods",
         "stats",
         "stats4"
       ],
-      "Hash": "ef6ff3e15ce624118e6cf8151e58e38c"
+      "Hash": "0e5c84e543a3d04ce64c6f60ed46d7eb"
     },
     "FCBF": {
       "Package": "FCBF",
@@ -135,8 +136,9 @@
     },
     "GenomeInfoDb": {
       "Package": "GenomeInfoDb",
-      "Version": "1.36.4",
+      "Version": "1.38.8",
       "Source": "Bioconductor",
+      "Repository": "Bioconductor 3.18",
       "Requirements": [
         "BiocGenerics",
         "GenomeInfoDbData",
@@ -149,20 +151,20 @@
         "stats4",
         "utils"
       ],
-      "Hash": "1c6756527d78e8135d34662d2e1d54ec"
+      "Hash": "155053909d2831bfac154a1118151d6b"
     },
     "GenomeInfoDbData": {
       "Package": "GenomeInfoDbData",
-      "Version": "1.2.10",
+      "Version": "1.2.11",
       "Source": "Bioconductor",
       "Requirements": [
         "R"
       ],
-      "Hash": "56294b21068b8cb5db1c47d0a42f307b"
+      "Hash": "10f32956181d1d46bd8402c93ac193e8"
     },
     "GenomicRanges": {
       "Package": "GenomicRanges",
-      "Version": "1.52.1",
+      "Version": "1.54.1",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -176,11 +178,11 @@
         "stats4",
         "utils"
       ],
-      "Hash": "c9471497a07953ded9b8889879c079e9"
+      "Hash": "7e0c1399af35369312d9c399454374e8"
     },
     "IRanges": {
       "Package": "IRanges",
-      "Version": "2.34.1",
+      "Version": "2.36.0",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -191,7 +193,7 @@
         "stats4",
         "utils"
       ],
-      "Hash": "18939552437a335b59fb381e508275d6"
+      "Hash": "f98500eeb93e8a66ad65be955a848595"
     },
     "MASS": {
       "Package": "MASS",
@@ -226,13 +228,13 @@
     },
     "MatrixGenerics": {
       "Package": "MatrixGenerics",
-      "Version": "1.12.3",
+      "Version": "1.14.0",
       "Source": "Bioconductor",
       "Requirements": [
         "matrixStats",
         "methods"
       ],
-      "Hash": "10a6bd0dcabaeede87616e4465b6ac6f"
+      "Hash": "088cd2077b5619fcb7b373b1a45174e7"
     },
     "R6": {
       "Package": "R6",
@@ -317,8 +319,9 @@
     },
     "S4Arrays": {
       "Package": "S4Arrays",
-      "Version": "1.0.6",
+      "Version": "1.2.1",
       "Source": "Bioconductor",
+      "Repository": "Bioconductor 3.18",
       "Requirements": [
         "BiocGenerics",
         "IRanges",
@@ -330,11 +333,11 @@
         "methods",
         "stats"
       ],
-      "Hash": "2b40d107b4a6fbd3f0cc81214d0b2891"
+      "Hash": "3213a9826adb8f48e51af1e7b30fa568"
     },
     "S4Vectors": {
       "Package": "S4Vectors",
-      "Version": "0.38.2",
+      "Version": "0.40.2",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -344,11 +347,31 @@
         "stats4",
         "utils"
       ],
-      "Hash": "338207894998073e7823706f886a1386"
+      "Hash": "1716e201f81ced0f456dd5ec85fe20f8"
+    },
+    "SparseArray": {
+      "Package": "SparseArray",
+      "Version": "1.2.4",
+      "Source": "Bioconductor",
+      "Repository": "Bioconductor 3.18",
+      "Requirements": [
+        "BiocGenerics",
+        "IRanges",
+        "Matrix",
+        "MatrixGenerics",
+        "R",
+        "S4Arrays",
+        "S4Vectors",
+        "XVector",
+        "matrixStats",
+        "methods",
+        "stats"
+      ],
+      "Hash": "391092e7b81373ab624bd6471cebccd4"
     },
     "SummarizedExperiment": {
       "Package": "SummarizedExperiment",
-      "Version": "1.30.2",
+      "Version": "1.32.0",
       "Source": "Bioconductor",
       "Requirements": [
         "Biobase",
@@ -367,11 +390,11 @@
         "tools",
         "utils"
       ],
-      "Hash": "6af56fbcb57deb9b094a352beee9a202"
+      "Hash": "caee529bf9710ff6fe1776612fcaa266"
     },
     "XVector": {
       "Package": "XVector",
-      "Version": "0.40.0",
+      "Version": "0.42.0",
       "Source": "Bioconductor",
       "Requirements": [
         "BiocGenerics",
@@ -383,7 +406,7 @@
         "utils",
         "zlibbioc"
       ],
-      "Hash": "cc3048ef590a16ff55a5e3149d5e060b"
+      "Hash": "65c0b6bca03f88758f86ef0aa18c4873"
     },
     "abind": {
       "Package": "abind",
@@ -517,6 +540,16 @@
       ],
       "Hash": "b21916dd77a27642b447374a5d30ecf3"
     },
+    "codetools": {
+      "Package": "codetools",
+      "Version": "0.2-20",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "61e097f35917d342622f21cdc79c256e"
+    },
     "colorspace": {
       "Package": "colorspace",
       "Version": "2.1-0",
@@ -1632,9 +1665,10 @@
     },
     "zlibbioc": {
       "Package": "zlibbioc",
-      "Version": "1.46.0",
+      "Version": "1.48.2",
       "Source": "Bioconductor",
-      "Hash": "20158ef5adb641f0b4e8d63136f0e870"
+      "Repository": "Bioconductor 3.18",
+      "Hash": "2344be62c2da4d9e9942b5d8db346e59"
     }
   }
 }