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title: Short analysis of the 10X million neuron data set
author: Aaron Lun
date: 29 June 2017
output:
BiocStyle::html_document:
fig.caption: no
---
```{r style, echo = FALSE, results = 'asis'}
BiocStyle::markdown()
```
# Introduction
Here we perform a brief analysis of the 1M neuron data set from 10X genomics (https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.3.0/1M_neurons).
This uses a variety of low-level packages to represent the data on-disk, as well as high-level packages for scRNA-seq data analysis.
The aim is to demonstrate the usefulness of the _beachmat_ API in facilitating high-level analyses from a `HDF5Matrix` object.