diff --git a/src/ONCOCNV.sh b/src/ONCOCNV.sh index 10d8de2..b788b67 100644 --- a/src/ONCOCNV.sh +++ b/src/ONCOCNV.sh @@ -15,7 +15,7 @@ #Author: Valentina BOEVA -VERSION=6.9 +VERSION=7.0 ############################################################################################################### @@ -90,7 +90,7 @@ cat $TOOLDIR/processControl.R | R --slave --args $OUTDIR/Control.stats.txt $OUTD #uncomment in case you want to manually limit the number of principal components #PCtoKeep=1 -#cat $TOOLDIR/processControl.v$VERSION.R | R --slave --args $OUTDIR/Control.stats.txt $OUTDIR/Control.stats.Processed.txt $OUTDIR/target.GC.txt $PCtoKeep +#cat $TOOLDIR/processControl.R | R --slave --args $OUTDIR/Control.stats.txt $OUTDIR/Control.stats.Processed.txt $OUTDIR/target.GC.txt $PCtoKeep ls -l $OUTDIR/Control.stats.Processed.txt #process test samples and predict CNA and CNVs: