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Error in MoVRs_ExtractMotif.py encountered when running test #18

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rtraborn opened this issue Sep 6, 2016 · 1 comment
Open

Error in MoVRs_ExtractMotif.py encountered when running test #18

rtraborn opened this issue Sep 6, 2016 · 1 comment

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@rtraborn
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rtraborn commented Sep 6, 2016

I recently encountered an apparent error when running the sample test using the newest build of MoVRs:

MoVRs -a testpeakfile --genome ./TestGenome -o test_0906 --size [-60,40] -p 8 >& errTEST_0906

The error reads as follows:

python /home/rtraborn/development/MoVRs/scripts/MoVRs_ExtractMotif.py -i AllMotifs.meme -t 1e-10 -o FilteredMotifs.meme File "/home/rtraborn/development/MoVRs/scripts/MoVRs_ExtractMotif.py", line 27 tmp_return = [x[0] for x in tmp_sorted] ^ TabError: inconsistent use of tabs and spaces in indentation Fatal error running MoVRs_ExtractMotif.py. Please check.

@vpbrendel
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You can easily fix this on line 27 by changing the indentation, as per your reported error message.
However, I think the crux of the matter might be inconsistent representation of "tabs" on Mac OS and Linux. I am going to test a version with only spaces for indentation.

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