From 5010e77ea8e7417bc2d4cf8f4088455aa39e393c Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 10 Jan 2023 00:26:16 +0000 Subject: [PATCH] chore(main): release 0.1.0 --- CHANGELOG.md | 21 +++++++++++++++++++++ pyproject.toml | 2 +- 2 files changed, 22 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e69de29b..c20bcddb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -0,0 +1,21 @@ +# Changelog + +## [0.1.0](https://github.com/CAST-genomics/haptools/compare/v0.0.3...v0.1.0) (2023-01-10) + + +### Features + +* a new `--no-normalize` parameter for `simphenotype` ([#156](https://github.com/CAST-genomics/haptools/issues/156)) ([24a0867](https://github.com/CAST-genomics/haptools/commit/24a0867ee8c4b1f495f5dde43600758daa2d916d)) +* add `--seed` to `simphenotype` ([#162](https://github.com/CAST-genomics/haptools/issues/162)) ([9f7890a](https://github.com/CAST-genomics/haptools/commit/9f7890a6efd5be90717aaeeeab1f638512c6e2c4)) +* change default verbosity to INFO ([#157](https://github.com/CAST-genomics/haptools/issues/157)) ([18ff090](https://github.com/CAST-genomics/haptools/commit/18ff090b431891b16b4aae9d297983d481a3d248)) +* github actions for publishing ([#141](https://github.com/CAST-genomics/haptools/issues/141)) ([5cf6f29](https://github.com/CAST-genomics/haptools/commit/5cf6f29b64a49f9405ab78eebab5e0de20963376)) +* updated `.vcf.gz` output in simgenotype ([#150](https://github.com/CAST-genomics/haptools/issues/150)) ([f61f613](https://github.com/CAST-genomics/haptools/commit/f61f613c55638efb610fb9ca03b0292f42dc2623)) + + +### Bug Fixes + +* Added utilization of logging class to karyogram and simgenotype ([#159](https://github.com/CAST-genomics/haptools/issues/159)) ([bcf778a](https://github.com/CAST-genomics/haptools/commit/bcf778a1180d6208c7f24a6f63af1df830734dc5)) +* case where genotypes are all the same but heritability is specified in `simphenotype` ([#145](https://github.com/CAST-genomics/haptools/issues/145)) ([063b411](https://github.com/CAST-genomics/haptools/commit/063b411302e4f299f02de82ad4040d2eb3fa8a61)) +* issue where breakpoints weren't outputting ([#144](https://github.com/CAST-genomics/haptools/issues/144)) ([ff90bff](https://github.com/CAST-genomics/haptools/commit/ff90bff662b5b3ebc98278cf64d4919fbe4699c5)) +* logging so that it doesn't affect the root logger ([#154](https://github.com/CAST-genomics/haptools/issues/154)) ([c1dc1ef](https://github.com/CAST-genomics/haptools/commit/c1dc1efed132f365c9268978be37bf25b4ef10b5)) +* pin numpy to ensure a recent version of numpy ([#151](https://github.com/CAST-genomics/haptools/issues/151)) ([7c84a45](https://github.com/CAST-genomics/haptools/commit/7c84a454dfe3b57e559a3f4439b1f2dc390700d0)) diff --git a/pyproject.toml b/pyproject.toml index dbdfce86..286e05f5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "haptools" -version = "0.0.3" +version = "0.1.0" description = "Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis" authors = ["Arya Massarat", "Michael Lamkin"] license = "MIT"