diff --git a/.test/contrasts.tinytest.tsv b/.test/contrasts.tinytest.tsv
new file mode 100644
index 0000000..c69fab0
--- /dev/null
+++ b/.test/contrasts.tinytest.tsv
@@ -0,0 +1,2 @@
+condition1	condition2
+53_H3K4me3	HN6_H3K4me3
\ No newline at end of file
diff --git a/.test/samples.tinytest.tsv b/.test/samples.tinytest.tsv
new file mode 100644
index 0000000..fbf6aef
--- /dev/null
+++ b/.test/samples.tinytest.tsv
@@ -0,0 +1,4 @@
+sampleName	replicateNumber	isControl	controlName	controlReplicateNumber	path_to_R1	path_to_R2
+53_H3K4me3	1	N	HN6_IgG_rabbit_negative_control	1	PIPELINE_HOME/.test/53_H3K4me3_1.R1.fastq.gz	PIPELINE_HOME/.test/53_H3K4me3_1.R2.fastq.gz
+HN6_H3K4me3	1	N	HN6_IgG_rabbit_negative_control	1	PIPELINE_HOME/.test/HN6_H3K4me3_1.R1.fastq.gz	PIPELINE_HOME/.test/HN6_H3K4me3_1.R2.fastq.gz
+HN6_IgG_rabbit_negative_control	1	Y	-	-	PIPELINE_HOME/.test/HN6_IgG_rabbit_negative_control_1.R1.fastq.gz	PIPELINE_HOME/.test/HN6_IgG_rabbit_negative_control_1.R2.fastq.gz
\ No newline at end of file
diff --git a/carlisle b/carlisle
index c2e1ac0..1302420 100755
--- a/carlisle
+++ b/carlisle
@@ -21,17 +21,9 @@ SCRIPTBASENAME=$(readlink -f $(basename $0))
 
 #define cluster, partitions dependent on host
 hostID=`echo $HOSTNAME`
-if [[ $hostID == "biowulf.nih.gov" ]]; then
-  BUYINPARTITIONS=$(bash <(curl -s https://raw.githubusercontent.com/CCBR/Tools/master/Biowulf/get_buyin_partition_list.bash 2>/dev/null))
-  PARTITIONS="norm,ccr"
-  cluster_specific_yaml="cluster_biowulf.yaml"
-  tools_specific_yaml="tools_biowulf.yaml"
-  #if [ $BUYINPARTITIONS ];then PARTITIONS="norm,$BUYINPARTITIONS";fi
-elif [[ $hostID == "biowulf8.nih.gov" ]]; then
-  PARTITIONS="rhel8"
-  cluster_specific_yaml="cluster_rhel8.yaml"
-  tools_specific_yaml="tools_rhel8.yaml"
-fi
+PARTITIONS="norm,ccr"
+cluster_specific_yaml="cluster_biowulf.yaml"
+tools_specific_yaml="tools_biowulf.yaml"
 
 # essential files
 # these are relative to the workflows' base folder
@@ -252,6 +244,14 @@ function testrun() {
   dryrun
 }
 
+function tinytestrun() {
+  check_essential_files
+  sed -e "s/PIPELINE_HOME/${PIPELINE_HOME//\//\\/}/g" ${PIPELINE_HOME}/.test/samples.tinytest.tsv > $WORKDIR/config/samples.tsv
+  cp ${PIPELINE_HOME}/.test/contrasts.tinytest.tsv $WORKDIR/config/contrasts.tsv
+  check_essential_files
+  dryrun
+}
+
 function runslurm() {
 # Submit the execution of the pipeline to the biowulf job scheduler (slurm)
   runcheck
@@ -430,6 +430,7 @@ function main(){
     runlocal) runlocal && exit 0;;
     reset) reset && exit 0;;
     testrun) testrun && exit 0;;
+    tinytestrun) tinytestrun && exit 0;;          # hidden option for debugging
     dry) dryrun && exit 0;;                      # hidden option
     local) runlocal && exit 0;;                  # hidden option
     reconfig) reconfig && exit 0;;               # hidden option for debugging
@@ -441,4 +442,4 @@ function main(){
 }
 
 # call the main function
-main "$@"
+main "$@"
\ No newline at end of file
diff --git a/resources/blacklistbed/hg19.bed b/resources/blacklistbed/hg19.bed
old mode 100755
new mode 100644
index a37f048..ee2de95
--- a/resources/blacklistbed/hg19.bed
+++ b/resources/blacklistbed/hg19.bed
@@ -1,411 +1,411 @@
-chr1	564449	570371	High_Mappability_island	1000	.
-chr1	724136	727043	Satellite_repeat	1000	.
-chr1	825006	825115	BSR/Beta	1000	.
-chr1	2583334	2634374	Low_mappability_island	1000	.
-chr1	4363064	4363242	(CATTC)n	1000	.
-chr1	5725866	5736651	Low_mappability_island	1000	.
-chr1	16839923	16841396	Low_mappability_island	1000	.
-chr1	38077347	38077423	Low_mappability_island	1000	.
-chr1	91852785	91853147	LSU-rRNA_Hsa	1000	.
-chr1	104163724	104163860	Low_mappability_island	1000	.
-chr1	108112972	108113707	LSU-rRNA_Hsa	1000	.
-chr1	121351474	121487059	centromeric_repeat	1000	.
-chr1	142535434	142543081	Satellite_repeat	1000	.
-chr1	142723256	142723968	Low_mappability_island	1000	.
-chr1	142792613	142793303	Low_mappability_island	1000	.
-chr1	142835822	142837333	Low_mappability_island	1000	.
-chr1	143274490	143284340	centromeric_repeat	1000	.
-chr1	145277108	145277572	LSU-rRNA_Hsa	1000	.
-chr1	149033183	149035829	Satellite_repeat	1000	.
-chr1	156186169	156186712	High_Mappability_island	1000	.
-chr1	224199390	224204260	Satellite_repeat	1000	.
-chr1	233318467	233318516	(CATTC)n	1000	.
-chr1	236260366	236260821	Low_mappability_island	1000	.
-chr1	237766308	237766764	LSU-rRNA_Hsa	1000	.
-chr1	238105345	238105511	Low_mappability_island	1000	.
-chr1	238108025	238108378	Low_mappability_island	1000	.
-chr1	238108645	238109697	Low_mappability_island	1000	.
-chr10	18841533	18862467	(CATTC)n	1000	.
-chr10	20035661	20037171	Low_mappability_island	1000	.
-chr10	36722282	36723650	Low_mappability_island	1000	.
-chr10	38772277	38819357	Satellite_repeat	1000	.
-chr10	38868892	38889025	Satellite_repeat	1000	.
-chr10	39076515	39155771	Satellite_repeat	1000	.
-chr10	42354835	42548642	centromeric_repeat	1000	.
-chr10	42596676	42602082	Satellite_repeat	1000	.
-chr10	42596700	42602110	Satellite_repeat	1000	.
-chr10	42661264	42667623	Satellite_repeat	1000	.
-chr10	42790522	42818398	Satellite_repeat	1000	.
-chr10	135498649	135502716	Satellite_repeat	1000	.
-chr11	6831669	6831838	ALR/Alpha	1000	.
-chr11	10529403	10531969	Low_mappability_island	1000	.
-chr11	48671444	48902406	centromeric_repeat	1000	.
-chr11	48931242	48964015	centromeric_repeat	1000	.
-chr11	50318471	50784078	centromeric_repeat	1000	.
-chr11	51090700	51374066	centromeric_repeat	1000	.
-chr11	51567242	51594226	centromeric_repeat	1000	.
-chr11	54694046	55027975	centromeric_repeat	1000	.
-chr11	73221660	73221946	Low_mappability_island	1000	.
-chr11	85194913	85195322	LSU-rRNA_Hsa	1000	.
-chr11	87524468	87525005	Low_mappability_island	1000	.
-chr11	103275584	103281729	Low_mappability_island	1000	.
-chr11	122874287	122874443	Low_mappability_island	1000	.
-chr12	20704285	20704583	SSU-rRNA_Hsa	1000	.
-chr12	34372315	34372825	LSU-rRNA_Hsa	1000	.
-chr12	34432130	34857010	centromeric_repeat	1000	.
-chr12	37989447	38441828	centromeric_repeat	1000	.
-chr12	38531376	38531930	LSU-rRNA_Hsa	1000	.
-chr12	41757383	41757545	Low_mappability_island	1000	.
-chr12	127650407	127651075	LSU-rRNA_Hsa	1000	.
-chr12	132061320	132062046	Low_mappability_island	1000	.
-chr13	56545728	56545925	Low_mappability_island	1000	.
-chr13	110076444	110076782	Low_mappability_island	1000	.
-chr14	18999935	19056900	centromeric_repeat	1000	.
-chr14	32953263	32954381	Low_mappability_island	1000	.
-chr14	84637832	84639038	Low_mappability_island	1000	.
-chr14	90341302	90341516	SSU-rRNA_Hsa	1000	.
-chr15	19999941	20044132	centromeric_repeat	1000	.
-chr16	32493036	32570826	ALR/Alpha	1000	.
-chr16	32590063	32598801	ALR/Alpha	1000	.
-chr16	33237130	33241330	Low_mappability_island	1000	.
-chr16	33864355	34023306	centromeric_repeat	1000	.
-chr16	34180542	34197081	Satellite_repeat	1000	.
-chr16	34530115	34542632	BSR/Beta	1000	.
-chr16	35193580	35285885	centromeric_repeat	1000	.
-chr16	46385718	46456668	Satellite_repeat	1000	.
-chr16	46497639	46500515	Satellite_repeat	1000	.
-chr16	47538629	47539297	LSU-rRNA_Hsa	1000	.
-chr17	19355538	19356096	LSU-rRNA_Hsa	1000	.
-chr17	19502495	19506773	Low_mappability_island	1000	.
-chr17	21905167	21906712	centromeric_repeat	1000	.
-chr17	22018524	22032049	Low_mappability_island	1000	.
-chr17	22221073	22263006	centromeric_repeat	1000	.
-chr17	25263010	25268059	Satellite_repeat	1000	.
-chr17	25415551	25417559	telomeric_repeat	1000	.
-chr17	31149365	31149981	High_Mappability_island	1000	.
-chr17	33478114	33478372	LSU-rRNA_Hsa	1000	.
-chr17	41381502	41382591	High_Mappability_island	1000	.
-chr17	41463538	41464075	High_Mappability_island	1000	.
-chr17	41464478	41465015	snRNA	1000	.
-chr17	41465562	41467288	High_Mappability_island	1000	.
-chr17	51183038	51183763	Low_mappability_island	1000	.
-chr17	55868618	55868752	LSU-rRNA_Hsa	1000	.
-chr17	75158031	75158430	LSU-rRNA_Hsa	1000	.
-chr18	96416	97552	Satellite_repeat	1000	.
-chr18	105658	112233	Satellite_repeat	1000	.
-chr18	2842252	2842356	Low_mappability_island	1000	.
-chr18	15393801	15393992	centromeric_repeat	1000	.
-chr18	18510894	18520356	centromeric_repeat	1000	.
-chr18	44126235	44126593	(CATTC)n	1000	.
-chr18	45379603	45379864	Low_mappability_island	1000	.
-chr18	50319086	50319301	Low_mappability_island	1000	.
-chr18	77772846	77773065	LSU-rRNA_Hsa	1000	.
-chr19	246006	247844	TAR1	1000	.
-chr19	22877614	22877696	SSU-rRNA_Hsa	1000	.
-chr19	23235030	23235504	BSR/Beta	1000	.
-chr19	24182398	24186210	LSU-rRNA_Hsa	1000	.
-chr19	24385474	24633168	centromeric_repeat	1000	.
-chr19	27730611	28262682	centromeric_repeat	1000	.
-chr19	36066445	36066810	LSU-rRNA_Hsa	1000	.
-chr19	36756398	36800948	centromeric_repeat	1000	.
-chr19	37759473	37797722	centromeric_repeat	1000	.
-chr19	44914313	44916340	ACRO1	1000	.
-chr19	44960681	44962681	ACRO1	1000	.
-chr2	739925	740994	Low_mappability_island	1000	.
-chr2	49456729	49457067	Low_mappability_island	1000	.
-chr2	88124390	88124903	Low_mappability_island	1000	.
-chr2	89830421	89880514	Satellite_repeat	1000	.
-chr2	90371401	90394776	Satellite_repeat	1000	.
-chr2	90443001	90545431	Low_mappability_island	1000	.
-chr2	91595080	91616015	Satellite_repeat	1000	.
-chr2	92267428	92326280	centromeric_repeat	1000	.
-chr2	115695017	115695281	LSU-rRNA_Hsa	1000	.
-chr2	117781085	117781300	Low_mappability_island	1000	.
-chr2	132966248	132989300	centromeric_repeat	1000	.
-chr2	132994855	133007983	ALR/Alpha	1000	.
-chr2	133011824	133013298	SSU-rRNA_Hsa	1000	.
-chr2	133036250	133040042	LSU-rRNA_Hsa	1000	.
-chr2	133044095	133045945	ACRO1	1000	.
-chr2	143848503	143848792	Low_mappability_island	1000	.
-chr2	148022736	148022878	Low_mappability_island	1000	.
-chr2	149639207	149639515	Low_mappability_island	1000	.
-chr2	156120500	156120610	Low_mappability_island	1000	.
-chr2	162135000	162139241	Low_mappability_island	1000	.
-chr2	230045426	230045796	LSU-rRNA_Hsa	1000	.
-chr20	26257032	26320267	centromeric_repeat	1000	.
-chr20	29517710	29521147	centromeric_repeat	1000	.
-chr20	29803876	29833334	centromeric_repeat	1000	.
-chr20	55932703	55936114	chrM	1000	.
-chr20	62916702	62918053	telomeric_repeat	1000	.
-chr21	9647205	9648529	Low_mappability_island	1000	.
-chr21	9694896	9704962	centromeric_repeat	1000	.
-chr21	9825451	9827612	High_Mappability_island	1000	.
-chr21	9827612	9845233	Low_mappability_island	1000	.
-chr21	9881895	9882569	TAR1	1000	.
-chr21	10084922	10088004	Satellite_repeat	1000	.
-chr21	10492876	10493049	Low_mappability_island	1000	.
-chr21	10599428	10599915	TAR1	1000	.
-chr21	10697886	10860890	centromeric_repeat	1000	.
-chr21	11186054	11188131	Satellite_repeat	1000	.
-chr21	14338127	14369791	centromeric_repeat	1000	.
-chr21	18800575	18800997	(GAGTG)n	1000	.
-chr21	27228003	27228242	SSU-rRNA_Hsa	1000	.
-chr21	46796081	46796336	Low_mappability_island	1000	.
-chr22	16847814	16862659	Satellite_repeat	1000	.
-chr22	18876789	18884510	Satellite_repeat	1000	.
-chr3	25508897	25509131	Low_mappability_island	1000	.
-chr3	73159606	73161131	snRNA	1000	.
-chr3	75696297	75699304	BSR/Beta	1000	.
-chr3	75717841	75720426	Satellite_repeat	1000	.
-chr3	80995858	81014459	ALR/Alpha	1000	.
-chr3	90311686	90507410	centromeric_repeat	1000	.
-chr3	93504815	93519133	centromeric_repeat	1000	.
-chr3	96335934	96337436	Low_mappability_island	1000	.
-chr3	160665423	160665642	Low_mappability_island	1000	.
-chr3	196625514	196625860	Satellite_repeat	1000	.
-chr3	197825427	197834080	Low_mappability_island	1000	.
-chr4	9987	12694	telomeric_repeat	1000	.
-chr4	12276463	12292424	ALR/Alpha	1000	.
-chr4	12641862	12642305	Low_mappability_island	1000	.
-chr4	21583630	21583719	(GAATG)n	1000	.
-chr4	27732004	27732240	Low_mappability_island	1000	.
-chr4	47774268	47774416	Low_mappability_island	1000	.
-chr4	49085372	49342114	centromeric_repeat	1000	.
-chr4	49488472	49662085	centromeric_repeat	1000	.
-chr4	52659961	52688986	centromeric_repeat	1000	.
-chr4	56194229	56194584	Low_mappability_island	1000	.
-chr4	65473858	65473941	Low_mappability_island	1000	.
-chr4	68264186	68266830	centromeric_repeat	1000	.
-chr4	70296565	70296841	LSU-rRNA_Hsa	1000	.
-chr4	76807083	76807320	LSU-rRNA_Hsa	1000	.
-chr4	78929660	78929920	Low_mappability_island	1000	.
-chr4	156374749	156377226	chrM	1000	.
-chr4	156384860	156387314	Low_mappability_island	1000	.
-chr4	163342479	163342744	Low_mappability_island	1000	.
-chr4	190190746	190203442	Low_mappability_island	1000	.
-chr4	190801869	190802909	Low_mappability_island	1000	.
-chr4	190943802	190943962	Satellite_repeat	1000	.
-chr4	190987268	190990949	Satellite_repeat	1000	.
-chr4	191026302	191044344	telomeric_repeat	1000	.
-chr5	17517177	17600940	Low_mappability_island	1000	.
-chr5	21477365	21497415	Low_mappability_island	1000	.
-chr5	34177882	34197574	Low_mappability_island	1000	.
-chr5	45908253	46411114	centromeric_repeat	1000	.
-chr5	49405493	49554574	centromeric_repeat	1000	.
-chr5	71146650	71146996	LSU-rRNA_Hsa	1000	.
-chr5	79945807	79948223	Low_mappability_island	1000	.
-chr5	93903068	93906726	Low_mappability_island	1000	.
-chr5	97746525	97746679	Low_mappability_island	1000	.
-chr5	99381556	99390873	Low_mappability_island	1000	.
-chr5	105889063	105889263	chrM	1000	.
-chr5	123095972	123097432	chrM	1000	.
-chr5	134258949	134264271	Low_mappability_island	1000	.
-chr5	174541634	174542177	SSU-rRNA_Hsa	1000	.
-chr6	58735349	58739031	centromeric_repeat	1000	.
-chr6	58745955	58780547	centromeric_repeat	1000	.
-chr6	61880095	61944008	centromeric_repeat	1000	.
-chr6	62189892	62206612	ALR/Alpha	1000	.
-chr6	62207809	62230644	ALR/Alpha	1000	.
-chr6	62283966	62284581	Low_mappability_island	1000	.
-chr6	133593944	133594201	LSU-rRNA_Hsa	1000	.
-chr6	137059142	137059326	SSU-rRNA_Hsa	1000	.
-chr6	150665074	150665281	SSU-rRNA_Hsa	1000	.
-chr6	157731310	157735525	Low_mappability_island	1000	.
-chr7	43878355	43878530	TAR1	1000	.
-chr7	45291517	45291740	Low_mappability_island	1000	.
-chr7	56437808	56442977	Low_mappability_island	1000	.
-chr7	57253980	57254183	Low_mappability_island	1000	.
-chr7	57255310	57255444	Low_mappability_island	1000	.
-chr7	57261829	57261998	Low_mappability_island	1000	.
-chr7	57544726	57556913	Satellite_repeat	1000	.
-chr7	57811488	57836990	centromeric_repeat	1000	.
-chr7	57939184	58055539	centromeric_repeat	1000	.
-chr7	61054285	62454680	centromeric_repeat	1000	.
-chr7	64059157	64066183	BSR/Beta	1000	.
-chr7	64951348	64956223	centromeric_repeat	1000	.
-chr7	68201468	68201673	Low_mappability_island	1000	.
-chr7	68527370	68527788	LSU-rRNA_Hsa	1000	.
-chr7	80962907	80963147	SSU-rRNA_Hsa	1000	.
-chr7	100550640	100551321	Low_mappability_island	1000	.
-chr7	142372972	142375638	Low_mappability_island	1000	.
-chr7	145694403	145694561	Low_mappability_island	1000	.
-chr8	155512	157639	TAR1	1000	.
-chr8	21455971	21456306	LSU-rRNA_Hsa	1000	.
-chr8	32868966	32873279	Low_mappability_island	1000	.
-chr8	43092737	43097573	Satellite_repeat	1000	.
-chr8	43399486	43843604	centromeric_repeat	1000	.
-chr8	46838215	47457541	centromeric_repeat	1000	.
-chr8	47739043	47742797	Low_mappability_island	1000	.
-chr8	47750844	47776101	BSR/Beta	1000	.
-chr8	56754955	56755418	LSU-rRNA_Hsa	1000	.
-chr8	69218401	69218922	LSU-rRNA_Hsa	1000	.
-chr8	70602248	70602620	LSU-rRNA_Hsa	1000	.
-chr8	77114154	77114389	Low_mappability_island	1000	.
-chr8	100508010	100508287	Low_mappability_island	1000	.
-chr9	10435	11574	TAR1	1000	.
-chr9	4799734	4800000	SSU-rRNA_Hsa	1000	.
-chr9	33656606	33659249	Low_mappability_island	1000	.
-chr9	42819021	42832395	centromeric_repeat	1000	.
-chr9	44070617	44070871	Low_mappability_island	1000	.
-chr9	44873123	44902307	centromeric_repeat	1000	.
-chr9	45355954	45357644	telomeric_repeat	1000	.
-chr9	45435109	45443517	centromeric_repeat	1000	.
-chr9	66494170	66494805	TAR1	1000	.
-chr9	66767710	66864329	centromeric_repeat	1000	.
-chr9	66970914	67005594	centromeric_repeat	1000	.
-chr9	67315122	67321036	centromeric_repeat	1000	.
-chr9	67789868	67792893	centromeric_repeat	1000	.
-chr9	68410775	68435115	Low_mappability_island	1000	.
-chr9	69677073	69687998	centromeric_repeat	1000	.
-chr9	69689770	69711497	centromeric_repeat	1000	.
-chr9	69947961	70011196	centromeric_repeat	1000	.
-chr9	70076144	70076855	centromeric_repeat	1000	.
-chr9	70318723	70327683	centromeric_repeat	1000	.
-chr9	72653073	72653572	Satellite_repeat	1000	.
-chr9	78790077	78790255	(GAATG)n	1000	.
-chr9	79186574	79187026	LSU-rRNA_Hsa	1000	.
-chr9	141019938	141021783	TAR1	1000	.
-chrM	1	16571	chrM	1000	.
-chrX	55206111	55206740	Low_mappability_island	1000	.
-chrX	55207753	55208152	Low_mappability_island	1000	.
-chrX	55208300	55208643	Low_mappability_island	1000	.
-chrX	55208980	55209208	Low_mappability_island	1000	.
-chrX	55209655	55210006	Low_mappability_island	1000	.
-chrX	58330488	58330843	centromeric_repeat	1000	.
-chrX	58373806	58373962	centromeric_repeat	1000	.
-chrX	58377680	58377864	centromeric_repeat	1000	.
-chrX	58415350	58416387	centromeric_repeat	1000	.
-chrX	58432411	58432680	centromeric_repeat	1000	.
-chrX	58485887	58486241	centromeric_repeat	1000	.
-chrX	58488898	58494528	centromeric_repeat	1000	.
-chrX	58499466	58504235	centromeric_repeat	1000	.
-chrX	58506076	58528214	centromeric_repeat	1000	.
-chrX	58528184	58536883	centromeric_repeat	1000	.
-chrX	58544061	58582415	centromeric_repeat	1000	.
-chrX	61681834	61919683	centromeric_repeat	1000	.
-chrX	62003205	62041580	centromeric_repeat	1000	.
-chrX	83658929	83659019	Low_mappability_island	1000	.
-chrX	108297348	108297886	LSU-rRNA_Hsa	1000	.
-chrX	114959057	115006437	Low_mappability_island	1000	.
-chrX	125605623	125607351	Low_mappability_island	1000	.
-chrX	125714985	125715338	Low_mappability_island	1000	.
-chrX	125864844	125864980	Low_mappability_island	1000	.
-chrX	125865719	125865874	Low_mappability_island	1000	.
-chrY	313470	313613	ALR/Alpha	1000	.
-chrY	3004989	3005175	LSU-rRNA_Hsa	1000	.
-chrY	4212807	4212910	Low_mappability_island	1000	.
-chrY	7671817	7694928	BSR/Beta	1000	.
-chrY	7726064	7730229	BSR/Beta	1000	.
-chrY	7730734	7731598	BSR/Beta	1000	.
-chrY	7735811	7752887	BSR/Beta	1000	.
-chrY	7785067	7806311	BSR/Beta	1000	.
-chrY	7806856	7814704	BSR/Beta	1000	.
-chrY	7815230	7820478	BSR/Beta	1000	.
-chrY	7829937	7832032	BSR/Beta	1000	.
-chrY	7832744	7848695	BSR/Beta	1000	.
-chrY	7870343	7873582	BSR/Beta	1000	.
-chrY	7874115	7874584	BSR/Beta	1000	.
-chrY	7875409	7885257	BSR/Beta	1000	.
-chrY	7886545	7894591	BSR/Beta	1000	.
-chrY	7898927	7916812	BSR/Beta	1000	.
-chrY	7918790	7921352	BSR/Beta	1000	.
-chrY	7926344	7936705	BSR/Beta	1000	.
-chrY	7941130	7947438	BSR/Beta	1000	.
-chrY	7948790	7964448	BSR/Beta	1000	.
-chrY	8179010	8181143	BSR/Beta	1000	.
-chrY	8181757	8213330	BSR/Beta	1000	.
-chrY	8214629	8215637	BSR/Beta	1000	.
-chrY	8220421	8230061	BSR/Beta	1000	.
-chrY	8230686	8231546	BSR/Beta	1000	.
-chrY	8240772	8265916	BSR/Beta	1000	.
-chrY	8291535	8292942	BSR/Beta	1000	.
-chrY	8294002	8295175	BSR/Beta	1000	.
-chrY	8296944	8321375	BSR/Beta	1000	.
-chrY	8325813	8325929	BSR/Beta	1000	.
-chrY	8326678	8333466	BSR/Beta	1000	.
-chrY	8334027	8342387	BSR/Beta	1000	.
-chrY	8356544	8369346	BSR/Beta	1000	.
-chrY	8909560	8909925	TAR1	1000	.
-chrY	8979478	8979585	Low_mappability_island	1000	.
-chrY	9072781	9072993	TAR1	1000	.
-chrY	9908430	9925608	centromeric_repeat	1000	.
-chrY	9981952	9982126	BSR/Beta	1000	.
-chrY	10034864	10036712	SSU-rRNA_Hsa	1000	.
-chrY	10040627	10045657	ALR/Alpha	1000	.
-chrY	10047773	10052533	ALR/Alpha	1000	.
-chrY	10053695	10057722	ALR/Alpha	1000	.
-chrY	10059394	10073694	ALR/Alpha	1000	.
-chrY	10075082	10075781	ALR/Alpha	1000	.
-chrY	10080736	10104539	ALR/Alpha	1000	.
-chrY	13104530	13144368	centromeric_repeat	1000	.
-chrY	13193966	13196535	Low_mappability_island	1000	.
-chrY	13252193	13259484	centromeric_repeat	1000	.
-chrY	13290177	13290667	chrM	1000	.
-chrY	13445957	13490591	Satellite_repeat	1000	.
-chrY	13642186	13749784	Satellite_repeat	1000	.
-chrY	13798522	13870984	Satellite_repeat	1000	.
-chrY	19691913	19692524	LSU-rRNA_Hsa	1000	.
-chrY	19764063	19776198	ALR/Alpha	1000	.
-chrY	19780600	19781704	ALR/Alpha	1000	.
-chrY	19783669	19796396	ALR/Alpha	1000	.
-chrY	19800068	19801419	ALR/Alpha	1000	.
-chrY	19808085	19817100	ALR/Alpha	1000	.
-chrY	19944298	19944581	TAR1	1000	.
-chrY	20235195	20235478	TAR1	1000	.
-chrY	20362679	20371694	ALR/Alpha	1000	.
-chrY	20378360	20379711	ALR/Alpha	1000	.
-chrY	20383383	20396110	ALR/Alpha	1000	.
-chrY	20398075	20399179	ALR/Alpha	1000	.
-chrY	20403581	20415713	ALR/Alpha	1000	.
-chrY	20487248	20487859	LSU-rRNA_Hsa	1000	.
-chrY	23124788	23125577	BSR/Beta	1000	.
-chrY	23149027	23151205	BSR/Beta	1000	.
-chrY	23157969	23158245	BSR/Beta	1000	.
-chrY	23159001	23167737	BSR/Beta	1000	.
-chrY	23178886	23181770	BSR/Beta	1000	.
-chrY	23220740	23223625	BSR/Beta	1000	.
-chrY	23234125	23235822	BSR/Beta	1000	.
-chrY	23236898	23248080	BSR/Beta	1000	.
-chrY	23248729	23248851	BSR/Beta	1000	.
-chrY	23899295	23899388	TAR1	1000	.
-chrY	23956449	23956628	TAR1	1000	.
-chrY	24247659	24247700	TAR1	1000	.
-chrY	24630999	24631040	TAR1	1000	.
-chrY	24953159	24975657	BSR/Beta	1000	.
-chrY	24980997	24991235	BSR/Beta	1000	.
-chrY	25022753	25039185	BSR/Beta	1000	.
-chrY	25040153	25042421	BSR/Beta	1000	.
-chrY	25048332	25059258	BSR/Beta	1000	.
-chrY	25060235	25064798	BSR/Beta	1000	.
-chrY	25099139	25121882	BSR/Beta	1000	.
-chrY	25122419	25160800	BSR/Beta	1000	.
-chrY	25182404	25192372	BSR/Beta	1000	.
-chrY	25217722	25219409	BSR/Beta	1000	.
-chrY	25493588	25495275	BSR/Beta	1000	.
-chrY	26148315	26148450	TAR1	1000	.
-chrY	26586905	26609405	BSR/Beta	1000	.
-chrY	26614745	26624983	BSR/Beta	1000	.
-chrY	26656502	26672934	BSR/Beta	1000	.
-chrY	26673902	26676170	BSR/Beta	1000	.
-chrY	26682081	26693007	BSR/Beta	1000	.
-chrY	26693984	26698547	BSR/Beta	1000	.
-chrY	26732883	26755623	BSR/Beta	1000	.
-chrY	26756160	26794538	BSR/Beta	1000	.
-chrY	26816148	26826116	BSR/Beta	1000	.
-chrY	26851466	26853153	BSR/Beta	1000	.
-chrY	27109247	27110934	BSR/Beta	1000	.
-chrY	27136281	27146249	BSR/Beta	1000	.
-chrY	27167859	27206241	BSR/Beta	1000	.
-chrY	27206778	27229502	BSR/Beta	1000	.
-chrY	27263848	27268411	BSR/Beta	1000	.
-chrY	27269388	27280315	BSR/Beta	1000	.
-chrY	27286226	27288494	BSR/Beta	1000	.
-chrY	27289462	27305895	BSR/Beta	1000	.
-chrY	27337415	27347656	BSR/Beta	1000	.
-chrY	27352996	27375497	BSR/Beta	1000	.
-chrY	27813984	27814119	TAR1	1000	.
-chrY	28555026	28555353	TAR1	1000	.
-chrY	28784129	28819695	Satellite_repeat	1000	.
-chrY	58819367	58917648	(CATTC)n	1000	.
-chrY	58971913	58997782	(CATTC)n	1000	.
-chrY	59361267	59362785	TAR1	1000	.
+chr1	564449	570371
+chr1	724136	727043
+chr1	825006	825115
+chr1	2583334	2634374
+chr1	4363064	4363242
+chr1	5725866	5736651
+chr1	16839923	16841396
+chr1	38077347	38077423
+chr1	91852785	91853147
+chr1	104163724	104163860
+chr1	108112972	108113707
+chr1	121351474	121487059
+chr1	142535434	142543081
+chr1	142723256	142723968
+chr1	142792613	142793303
+chr1	142835822	142837333
+chr1	143274490	143284340
+chr1	145277108	145277572
+chr1	149033183	149035829
+chr1	156186169	156186712
+chr1	224199390	224204260
+chr1	233318467	233318516
+chr1	236260366	236260821
+chr1	237766308	237766764
+chr1	238105345	238105511
+chr1	238108025	238108378
+chr1	238108645	238109697
+chr10	18841533	18862467
+chr10	20035661	20037171
+chr10	36722282	36723650
+chr10	38772277	38819357
+chr10	38868892	38889025
+chr10	39076515	39155771
+chr10	42354835	42548642
+chr10	42596676	42602082
+chr10	42596700	42602110
+chr10	42661264	42667623
+chr10	42790522	42818398
+chr10	135498649	135502716
+chr11	6831669	6831838
+chr11	10529403	10531969
+chr11	48671444	48902406
+chr11	48931242	48964015
+chr11	50318471	50784078
+chr11	51090700	51374066
+chr11	51567242	51594226
+chr11	54694046	55027975
+chr11	73221660	73221946
+chr11	85194913	85195322
+chr11	87524468	87525005
+chr11	103275584	103281729
+chr11	122874287	122874443
+chr12	20704285	20704583
+chr12	34372315	34372825
+chr12	34432130	34857010
+chr12	37989447	38441828
+chr12	38531376	38531930
+chr12	41757383	41757545
+chr12	127650407	127651075
+chr12	132061320	132062046
+chr13	56545728	56545925
+chr13	110076444	110076782
+chr14	18999935	19056900
+chr14	32953263	32954381
+chr14	84637832	84639038
+chr14	90341302	90341516
+chr15	19999941	20044132
+chr16	32493036	32570826
+chr16	32590063	32598801
+chr16	33237130	33241330
+chr16	33864355	34023306
+chr16	34180542	34197081
+chr16	34530115	34542632
+chr16	35193580	35285885
+chr16	46385718	46456668
+chr16	46497639	46500515
+chr16	47538629	47539297
+chr17	19355538	19356096
+chr17	19502495	19506773
+chr17	21905167	21906712
+chr17	22018524	22032049
+chr17	22221073	22263006
+chr17	25263010	25268059
+chr17	25415551	25417559
+chr17	31149365	31149981
+chr17	33478114	33478372
+chr17	41381502	41382591
+chr17	41463538	41464075
+chr17	41464478	41465015
+chr17	41465562	41467288
+chr17	51183038	51183763
+chr17	55868618	55868752
+chr17	75158031	75158430
+chr18	96416	97552
+chr18	105658	112233
+chr18	2842252	2842356
+chr18	15393801	15393992
+chr18	18510894	18520356
+chr18	44126235	44126593
+chr18	45379603	45379864
+chr18	50319086	50319301
+chr18	77772846	77773065
+chr19	246006	247844
+chr19	22877614	22877696
+chr19	23235030	23235504
+chr19	24182398	24186210
+chr19	24385474	24633168
+chr19	27730611	28262682
+chr19	36066445	36066810
+chr19	36756398	36800948
+chr19	37759473	37797722
+chr19	44914313	44916340
+chr19	44960681	44962681
+chr2	739925	740994
+chr2	49456729	49457067
+chr2	88124390	88124903
+chr2	89830421	89880514
+chr2	90371401	90394776
+chr2	90443001	90545431
+chr2	91595080	91616015
+chr2	92267428	92326280
+chr2	115695017	115695281
+chr2	117781085	117781300
+chr2	132966248	132989300
+chr2	132994855	133007983
+chr2	133011824	133013298
+chr2	133036250	133040042
+chr2	133044095	133045945
+chr2	143848503	143848792
+chr2	148022736	148022878
+chr2	149639207	149639515
+chr2	156120500	156120610
+chr2	162135000	162139241
+chr2	230045426	230045796
+chr20	26257032	26320267
+chr20	29517710	29521147
+chr20	29803876	29833334
+chr20	55932703	55936114
+chr20	62916702	62918053
+chr21	9647205	9648529
+chr21	9694896	9704962
+chr21	9825451	9827612
+chr21	9827612	9845233
+chr21	9881895	9882569
+chr21	10084922	10088004
+chr21	10492876	10493049
+chr21	10599428	10599915
+chr21	10697886	10860890
+chr21	11186054	11188131
+chr21	14338127	14369791
+chr21	18800575	18800997
+chr21	27228003	27228242
+chr21	46796081	46796336
+chr22	16847814	16862659
+chr22	18876789	18884510
+chr3	25508897	25509131
+chr3	73159606	73161131
+chr3	75696297	75699304
+chr3	75717841	75720426
+chr3	80995858	81014459
+chr3	90311686	90507410
+chr3	93504815	93519133
+chr3	96335934	96337436
+chr3	160665423	160665642
+chr3	196625514	196625860
+chr3	197825427	197834080
+chr4	9987	12694
+chr4	12276463	12292424
+chr4	12641862	12642305
+chr4	21583630	21583719
+chr4	27732004	27732240
+chr4	47774268	47774416
+chr4	49085372	49342114
+chr4	49488472	49662085
+chr4	52659961	52688986
+chr4	56194229	56194584
+chr4	65473858	65473941
+chr4	68264186	68266830
+chr4	70296565	70296841
+chr4	76807083	76807320
+chr4	78929660	78929920
+chr4	156374749	156377226
+chr4	156384860	156387314
+chr4	163342479	163342744
+chr4	190190746	190203442
+chr4	190801869	190802909
+chr4	190943802	190943962
+chr4	190987268	190990949
+chr4	191026302	191044344
+chr5	17517177	17600940
+chr5	21477365	21497415
+chr5	34177882	34197574
+chr5	45908253	46411114
+chr5	49405493	49554574
+chr5	71146650	71146996
+chr5	79945807	79948223
+chr5	93903068	93906726
+chr5	97746525	97746679
+chr5	99381556	99390873
+chr5	105889063	105889263
+chr5	123095972	123097432
+chr5	134258949	134264271
+chr5	174541634	174542177
+chr6	58735349	58739031
+chr6	58745955	58780547
+chr6	61880095	61944008
+chr6	62189892	62206612
+chr6	62207809	62230644
+chr6	62283966	62284581
+chr6	133593944	133594201
+chr6	137059142	137059326
+chr6	150665074	150665281
+chr6	157731310	157735525
+chr7	43878355	43878530
+chr7	45291517	45291740
+chr7	56437808	56442977
+chr7	57253980	57254183
+chr7	57255310	57255444
+chr7	57261829	57261998
+chr7	57544726	57556913
+chr7	57811488	57836990
+chr7	57939184	58055539
+chr7	61054285	62454680
+chr7	64059157	64066183
+chr7	64951348	64956223
+chr7	68201468	68201673
+chr7	68527370	68527788
+chr7	80962907	80963147
+chr7	100550640	100551321
+chr7	142372972	142375638
+chr7	145694403	145694561
+chr8	155512	157639
+chr8	21455971	21456306
+chr8	32868966	32873279
+chr8	43092737	43097573
+chr8	43399486	43843604
+chr8	46838215	47457541
+chr8	47739043	47742797
+chr8	47750844	47776101
+chr8	56754955	56755418
+chr8	69218401	69218922
+chr8	70602248	70602620
+chr8	77114154	77114389
+chr8	100508010	100508287
+chr9	10435	11574
+chr9	4799734	4800000
+chr9	33656606	33659249
+chr9	42819021	42832395
+chr9	44070617	44070871
+chr9	44873123	44902307
+chr9	45355954	45357644
+chr9	45435109	45443517
+chr9	66494170	66494805
+chr9	66767710	66864329
+chr9	66970914	67005594
+chr9	67315122	67321036
+chr9	67789868	67792893
+chr9	68410775	68435115
+chr9	69677073	69687998
+chr9	69689770	69711497
+chr9	69947961	70011196
+chr9	70076144	70076855
+chr9	70318723	70327683
+chr9	72653073	72653572
+chr9	78790077	78790255
+chr9	79186574	79187026
+chr9	141019938	141021783
+chrM	1	16571
+chrX	55206111	55206740
+chrX	55207753	55208152
+chrX	55208300	55208643
+chrX	55208980	55209208
+chrX	55209655	55210006
+chrX	58330488	58330843
+chrX	58373806	58373962
+chrX	58377680	58377864
+chrX	58415350	58416387
+chrX	58432411	58432680
+chrX	58485887	58486241
+chrX	58488898	58494528
+chrX	58499466	58504235
+chrX	58506076	58528214
+chrX	58528184	58536883
+chrX	58544061	58582415
+chrX	61681834	61919683
+chrX	62003205	62041580
+chrX	83658929	83659019
+chrX	108297348	108297886
+chrX	114959057	115006437
+chrX	125605623	125607351
+chrX	125714985	125715338
+chrX	125864844	125864980
+chrX	125865719	125865874
+chrY	313470	313613
+chrY	3004989	3005175
+chrY	4212807	4212910
+chrY	7671817	7694928
+chrY	7726064	7730229
+chrY	7730734	7731598
+chrY	7735811	7752887
+chrY	7785067	7806311
+chrY	7806856	7814704
+chrY	7815230	7820478
+chrY	7829937	7832032
+chrY	7832744	7848695
+chrY	7870343	7873582
+chrY	7874115	7874584
+chrY	7875409	7885257
+chrY	7886545	7894591
+chrY	7898927	7916812
+chrY	7918790	7921352
+chrY	7926344	7936705
+chrY	7941130	7947438
+chrY	7948790	7964448
+chrY	8179010	8181143
+chrY	8181757	8213330
+chrY	8214629	8215637
+chrY	8220421	8230061
+chrY	8230686	8231546
+chrY	8240772	8265916
+chrY	8291535	8292942
+chrY	8294002	8295175
+chrY	8296944	8321375
+chrY	8325813	8325929
+chrY	8326678	8333466
+chrY	8334027	8342387
+chrY	8356544	8369346
+chrY	8909560	8909925
+chrY	8979478	8979585
+chrY	9072781	9072993
+chrY	9908430	9925608
+chrY	9981952	9982126
+chrY	10034864	10036712
+chrY	10040627	10045657
+chrY	10047773	10052533
+chrY	10053695	10057722
+chrY	10059394	10073694
+chrY	10075082	10075781
+chrY	10080736	10104539
+chrY	13104530	13144368
+chrY	13193966	13196535
+chrY	13252193	13259484
+chrY	13290177	13290667
+chrY	13445957	13490591
+chrY	13642186	13749784
+chrY	13798522	13870984
+chrY	19691913	19692524
+chrY	19764063	19776198
+chrY	19780600	19781704
+chrY	19783669	19796396
+chrY	19800068	19801419
+chrY	19808085	19817100
+chrY	19944298	19944581
+chrY	20235195	20235478
+chrY	20362679	20371694
+chrY	20378360	20379711
+chrY	20383383	20396110
+chrY	20398075	20399179
+chrY	20403581	20415713
+chrY	20487248	20487859
+chrY	23124788	23125577
+chrY	23149027	23151205
+chrY	23157969	23158245
+chrY	23159001	23167737
+chrY	23178886	23181770
+chrY	23220740	23223625
+chrY	23234125	23235822
+chrY	23236898	23248080
+chrY	23248729	23248851
+chrY	23899295	23899388
+chrY	23956449	23956628
+chrY	24247659	24247700
+chrY	24630999	24631040
+chrY	24953159	24975657
+chrY	24980997	24991235
+chrY	25022753	25039185
+chrY	25040153	25042421
+chrY	25048332	25059258
+chrY	25060235	25064798
+chrY	25099139	25121882
+chrY	25122419	25160800
+chrY	25182404	25192372
+chrY	25217722	25219409
+chrY	25493588	25495275
+chrY	26148315	26148450
+chrY	26586905	26609405
+chrY	26614745	26624983
+chrY	26656502	26672934
+chrY	26673902	26676170
+chrY	26682081	26693007
+chrY	26693984	26698547
+chrY	26732883	26755623
+chrY	26756160	26794538
+chrY	26816148	26826116
+chrY	26851466	26853153
+chrY	27109247	27110934
+chrY	27136281	27146249
+chrY	27167859	27206241
+chrY	27206778	27229502
+chrY	27263848	27268411
+chrY	27269388	27280315
+chrY	27286226	27288494
+chrY	27289462	27305895
+chrY	27337415	27347656
+chrY	27352996	27375497
+chrY	27813984	27814119
+chrY	28555026	28555353
+chrY	28784129	28819695
+chrY	58819367	58917648
+chrY	58971913	58997782
+chrY	59361267	59362785
diff --git a/resources/blacklistbed/hg38.bed b/resources/blacklistbed/hg38.bed
index 2075b4d..a96479e 100644
--- a/resources/blacklistbed/hg38.bed
+++ b/resources/blacklistbed/hg38.bed
@@ -1,1050 +1,1049 @@
-Chr	Start	End	Detailed Annotation	Nearest TSS	Mappability	Overlap with ENCODE
-chr1	124610979	124625614	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	124347449	124349827	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	123681389	123697714	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124755617	124756133	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	228644488	228646810	TTS (NR_023363).10	RNA5S8	Mappable	Unique
-chr1	122763761	122771648	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123074471	123077388	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123698751	123699028	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124082237	124085912	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124195003	124199252	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	122822805	122852412	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124079072	124081761	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124637048	124650716	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123923101	123930829	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123947775	123954907	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	2651096	2657690	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Mappable	Unique
-chr1	123772279	123772518	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123888372	123895580	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124132073	124137242	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	123421242	123424555	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	122792518	122792713	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	123575612	123580150	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	123730701	123737589	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124192450	124193252	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122864530	122892414	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123457393	123461993	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124416522	124429776	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124488952	124492689	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123761364	123765317	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122974321	122975357	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124573689	124577060	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2660041	2662057	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	124666337	124666578	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124444870	124447910	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124628401	124632935	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123955788	123976252	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123749402	123749623	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123788987	123792333	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123353813	123358798	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123487838	123493348	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124185193	124186084	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	121742016	121776960	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124389047	124390123	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	248944611	248947412	(AGGGTT)n|Simple_repeat|Simple_repeat	PGBD2	Lowly	ENCODE Overlap
-chr1	16615621	16615795	Intergenic	NBPF1	Lowly	ENCODE Overlap
-chr1	124162104	124174735	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123769824	123771521	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122976387	122979388	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124046457	124046514	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123828506	123829677	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124487499	124487838	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123454191	123456805	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123831264	123840597	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123866133	123870135	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123207871	123216816	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123067262	123071930	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123671098	123680501	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123680799	123681034	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123787966	123788535	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	143183597	143277030	Intergenic	LSP1P5	Lowly	ENCODE Overlap
-chr1	123841498	123841592	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123777239	123787683	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123004659	123060219	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123410850	123411000	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122967648	122973395	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	228608508	228616048	TTS (NR_023363).2	RNA5S3	Lowly	ENCODE Overlap
-chr1	124312508	124313152	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2663197	2666377	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	124037252	124040943	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2658437	2659484	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	123638914	123647813	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122758317	122763284	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123310280	123312959	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123944700	123947541	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2696387	2697700	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	123993045	123993143	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	228616110	228616994	TTS (NR_023363).4	RNA5S8	Lowly	ENCODE Overlap
-chr1	123809159	123825290	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123700538	123701366	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123292604	123293199	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124524705	124536570	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122853507	122863783	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124396134	124398614	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124462900	124469384	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	789517	792613	(GGAATG)n|Simple_repeat|Simple_repeat	LOC100288069	Lowly	ENCODE Overlap
-chr1	122565737	122597777	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122660352	122712552	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123465637	123470989	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	16512350	16514335	TTS (NR_004400)	RNU1-1	Lowly	ENCODE Overlap
-chr1	124711528	124748035	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123515909	123517288	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122906144	122915306	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123871258	123876903	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123990369	123992936	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123449989	123452433	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123658013	123658426	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	161460728	161466377	CpG	FCGR2A	Lowly	ENCODE Overlap
-chr1	124430835	124441228	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124633057	124633319	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123757476	123761007	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124652111	124665269	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123124556	123125047	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123793121	123804898	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123319246	123324771	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123314679	123317444	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123387599	123390748	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124303939	124311225	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124558602	124573677	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2675075	2675937	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	122813930	122821753	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122892854	122906013	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123183593	123187242	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124594049	124605596	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	16614858	16615354	Intergenic	NBPF1	Lowly	ENCODE Overlap
-chr1	122599644	122617908	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2755311	2760203	"intron (NM_001242672, intron 5 of 7)"	TTC34	Lowly	ENCODE Overlap
-chr1	123955043	123955348	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123295606	123295739	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124024633	124024799	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123633969	123634047	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122502392	122558766	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123904701	123908708	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2676476	2689992	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	124593326	124593327	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124243016	124255477	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124193388	124194092	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122812476	122812926	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123187448	123187650	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123246292	123252731	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123345950	123353178	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123908832	123909015	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123865900	123866108	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123880442	123887992	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124605974	124606640	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123478972	123483857	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124127325	124131808	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123392121	123395225	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122655572	122659623	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	16725841	16728094	Intergenic	ESPNP	Lowly	ENCODE Overlap
-chr1	123471069	123472466	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123257533	123267929	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123487155	123487680	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123878887	123880095	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123721481	123724576	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123293396	123293989	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123648151	123653550	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123806472	123807799	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123484321	123484872	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123223300	123229067	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122988286	122988566	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124334073	124339709	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	228636195	228644351	GA-rich|Low_complexity|Low_complexity	RHOU	Lowly	ENCODE Overlap
-chr1	123750069	123757183	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123366175	123373760	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123133630	123149853	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124142769	124151448	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122750334	122757705	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124543344	124551494	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123463500	123464152	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123337837	123338665	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	228617880	228620677	promoter-TSS (NR_023363).5	RNA5S8	Lowly	ENCODE Overlap
-chr1	122559146	122563373	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124449186	124459787	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123705983	123709138	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123717922	123720330	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124553805	124556586	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124022068	124023445	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123774014	123776700	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124112936	124127192	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123703028	123703309	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123338733	123341125	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123534158	123538816	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122921571	122965108	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123739630	123746731	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123473265	123473765	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123078634	123090349	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123634201	123638786	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123267951	123272997	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	236712612	236716056	"intron (NM_001278344, intron 1 of 22)"	ACTN2	Lowly	ENCODE Overlap
-chr1	124537250	124541856	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124058577	124074991	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123426130	123440706	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124634253	124634854	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124493000	124494360	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123977871	123982318	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123601299	123632580	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124233326	124233698	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124496911	124521316	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123581424	123587147	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123152211	123160608	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124295346	124303919	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2667718	2674721	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	161442212	161459350	CpG	FCGR2A	Lowly	ENCODE Overlap
-chr1	124236503	124241894	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123595138	123599775	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124416165	124416369	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122981432	122981579	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124558348	124558487	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122918760	122919060	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124401333	124410007	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123909020	123916403	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123567201	123572421	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123983540	123986717	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124460404	124460735	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123090393	123124055	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122989513	122991506	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123545968	123562717	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123725476	123729267	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124047216	124058353	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123125721	123129029	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124748208	124754755	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123709361	123710441	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123192365	123205196	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124157846	124161487	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123274274	123277786	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	161466446	161472738	CpG	FCGR2A	Lowly	ENCODE Overlap
-chr1	123232086	123238851	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123600135	123600404	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122981905	122984908	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124410105	124415973	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123000144	123004503	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123710782	123716188	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124042426	124046077	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124153959	124157292	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124523859	124524670	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124391089	124393688	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123160743	123179378	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124340068	124346843	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123078238	123078262	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123463270	123463288	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124288111	124292489	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	228620723	228624068	promoter-TSS (NR_023363).6	RNA5S17	Lowly	ENCODE Overlap
-chr1	122985198	122987949	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123501642	123505110	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123494306	123500148	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123299360	123308922	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123477134	123478791	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123918014	123920972	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123564074	123564609	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124187392	124191846	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123860085	123865862	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124137450	124141973	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123231456	123232068	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124668405	124698204	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123660028	123667802	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124029009	124035852	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124314206	124330916	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	628088	635923	TTS (NR_162149)	MIR12136	Lowly	ENCODE Overlap
-chr1	124698889	124710105	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123654707	123657707	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122564484	122564628	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123327187	123336366	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124756241	124765560	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124587185	124593255	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123993263	124017467	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124577276	124577641	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123936407	123941483	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	144102590	144105633	(TGGCTGGCT)n|Simple_repeat|Simple_repeat	FAM72C	Lowly	ENCODE Overlap
-chr1	123063967	123066571	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	91386236	91388535	LSU-rRNA_Hsa|rRNA|rRNA	HFM1	Lowly	ENCODE Overlap
-chr1	121965774	121969623	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123506859	123512351	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124203810	124232742	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124177846	124182735	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	224010839	224015910	(AATGG)n|Simple_repeat|Simple_repeat	LOC100287497	Lowly	ENCODE Overlap
-chr1	123442350	123448859	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123336600	123336731	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123724579	123724815	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123668135	123668950	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123411051	123420183	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124350457	124387136	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	125165251	125171959	Intergenic	EMBP1	Lowly	ENCODE Overlap
-chr1	122617993	122622038	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123587727	123593407	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123240864	123243602	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123452734	123453336	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123252764	123256027	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124024808	124027897	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123318612	123318659	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122712809	122715970	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123217618	123218459	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122716926	122720666	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124091699	124105529	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124470643	124487474	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123766306	123769701	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124579298	124584106	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123899406	123904231	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124018297	124021565	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123825521	123828486	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123517950	123531595	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122793709	122809534	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123485159	123486942	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124075556	124076291	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	2691502	2693971	"intron (NM_001242672, intron 5 of 7)"	MMEL1	Lowly	ENCODE Overlap
-chr1	123374374	123383121	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123899167	123899184	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123073383	123074327	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122622921	122655193	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	125172600	125185576	Intergenic	EMBP1	Lowly	ENCODE Overlap
-chr1	122772071	122792107	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123222073	123222104	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	123395736	123410588	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	124521887	124523497	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	122915620	122915759	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	16612489	16614272	"5' UTR (NM_017940, exon 1 of 29)"	NBPF1	Mappable	ENCODE Overlap
-chr1	122720823	122749445	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	122992665	122999602	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	124551762	124552236	ALR/Alpha|Satellite|centr	EMBP1	Lowly	ENCODE Overlap
-chr1	122916012	122916101	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	2747597	2755052	"intron (NM_001242672, intron 5 of 7)"	TTC34	Mappable	ENCODE Overlap
-chr1	123841803	123858444	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	122810096	122810306	ALR/Alpha|Satellite|centr	EMBP1	Lowly	Unique
-chr1	124586233	124586899	ALR/Alpha|Satellite|centr	EMBP1	Lowly	Unique
-chr1	123187673	123191050	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124258930	124285568	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123279142	123292202	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	124765617	124785370	ALR/Alpha|Satellite|centr	EMBP1	Mappable	Unique
-chr1	123129823	123133340	ALR/Alpha|Satellite|centr	EMBP1	Mappable	ENCODE Overlap
-chr1	228624085	228635970	TTS (NR_023363).9	RNA5S14	Mappable	ENCODE Overlap
-chr1_KI270709v1_random	1	19452	Intergenic		Lowly	Unique
-chr1_KI270711v1_random	7349	10549	Intergenic		Lowly	Unique
-chr1_KI270712v1_random	57044	59379	(TGGCTGGCT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr1_KI270713v1_random	19745	23499	TTS (NR_004400).9	RNU1-2	Lowly	Unique
-chr10	38917532	38921312	(GAATG)n|Satellite|Satellite	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	38485929	38490812	Intergenic	LINC00999	Mappable	ENCODE Overlap
-chr10	40555218	40558145	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40184616	40184779	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40085143	40086546	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	42316454	42321742	Intergenic	LOC441666	Mappable	ENCODE Overlap
-chr10	40394887	40394946	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40134029	40136698	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	41123812	41126690	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	42302263	42306136	Intergenic	LOC441666	Mappable	ENCODE Overlap
-chr10	40975016	40977643	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	38784990	38787946	(TTCCA)n|Simple_repeat|Simple_repeat	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	42307404	42315736	Intergenic	LOC441666	Lowly	ENCODE Overlap
-chr10	126946285	126949389	"intron (NM_001290223, intron 1 of 51)"	DOCK1	Mappable	ENCODE Overlap
-chr10	40681674	40683032	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40412067	40415257	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40185985	40187776	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40890943	40893719	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40395146	40397876	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	41016424	41019108	ALR/Alpha|Satellite|centr	LOC441666	Lowly	ENCODE Overlap
-chr10	40510552	40510803	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40815111	40818385	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40199982	40200234	ALR/Alpha|Satellite|centr	ACTR3BP5	Lowly	ENCODE Overlap
-chr10	39968185	39968710	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40667639	40670355	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	38807376	38810540	(TTCCA)n|Simple_repeat|Simple_repeat	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	42065293	42106174	Intergenic	LOC441666	Lowly	ENCODE Overlap
-chr10	38799302	38801295	(TTCCA)n|Simple_repeat|Simple_repeat	ACTR3BP5	Lowly	ENCODE Overlap
-chr10	40129941	40131107	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	38497910	38501672	Intergenic	LINC00999	Mappable	ENCODE Overlap
-chr10	133685504	133691455	BSR/Beta|Satellite|Satellite	FRG2B	Mappable	ENCODE Overlap
-chr10	40961499	40963218	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40287965	40290809	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	38572473	38574967	(AATGG)n|Simple_repeat|Simple_repeat	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	42315741	42315752	Intergenic	LOC441666	Mappable	ENCODE Overlap
-chr10	40128252	40129424	ALR/Alpha|Satellite|centr	ACTR3BP5	Lowly	ENCODE Overlap
-chr10	42165072	42168883	Intergenic	LOC441666	Mappable	ENCODE Overlap
-chr10	38789940	38793846	(TTCCA)n|Simple_repeat|Simple_repeat	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	40933603	40935552	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40366986	40369532	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	38903116	38905607	(GAATGGAATG)n|Simple_repeat|Simple_repeat	ACTR3BP5	Mappable	ENCODE Overlap
-chr10	41842047	41917264	(ATGGA)n|Simple_repeat|Simple_repeat	LOC441666	Mappable	ENCODE Overlap
-chr10	40509472	40509493	ALR/Alpha|Satellite|centr	ACTR3BP5	Mappable	Unique
-chr10	42296616	42299414	Intergenic	LOC441666	Mappable	ENCODE Overlap
-chr10	40767435	40770603	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	40539939	40542976	ALR/Alpha|Satellite|centr	LOC441666	Mappable	ENCODE Overlap
-chr10	133679108	133679154	CpG	FRG2B	Mappable	ENCODE Overlap
-chr10	38523266	38530846	Intergenic	LINC00999	Mappable	ENCODE Overlap
-chr10	133761260	133765408	BSR/Beta|Satellite|Satellite	FRG2B	Mappable	ENCODE Overlap
-chr10	40476591	40478349	ALR/Alpha|Satellite|centr	ACTR3BP5	Lowly	ENCODE Overlap
-chr10	38577833	38582050	(AATGG)n|Simple_repeat|Simple_repeat	ACTR3BP5	Lowly	ENCODE Overlap
-chr10	38494933	38497542	Intergenic	LINC00999	Mappable	ENCODE Overlap
-chr10	133679249	133679353	CpG	FRG2B	Mappable	ENCODE Overlap
-chr11	3652764	3655645	"intron (NM_004314, intron 1 of 4)"	ART1	Mappable	ENCODE Overlap
-chr11	94236861	94237383	L1PA2|LINE|L1	IZUMO1R	Mappable	ENCODE Overlap
-chr11	10506890	10510998	promoter-TSS (NR_039705)	MTRNR2L8	Mappable	ENCODE Overlap
-chr11	94237393	94239001	L1PA2|LINE|L1	IZUMO1R	Lowly	ENCODE Overlap
-chr11	1016509	1018503	"exon (NM_005961, exon 31 of 33).2"	MUC6	Mappable	ENCODE Overlap
-chr12	9003	11550	(CTAACC)n|Simple_repeat|Simple_repeat	WASH8P	Mappable	ENCODE Overlap
-chr12	35613810	35616091	ALR/Alpha|Satellite|centr	ALG10	Mappable	ENCODE Overlap
-chr12	37245547	37247397	ALR/Alpha|Satellite|centr	ALG10B	Mappable	ENCODE Overlap
-chr12	37235710	37241245	ALR/Alpha|Satellite|centr	ALG10B	Mappable	ENCODE Overlap
-chr12	132239864	132243684	"intron (NM_001122636, intron 6 of 10)"	LOC100130238	Mappable	ENCODE Overlap
-chr12	37265352	37266527	ALR/Alpha|Satellite|centr	ALG10B	Mappable	ENCODE Overlap
-chr13	17896880	17897978	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18013137	18015392	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17053353	17056060	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17745515	17746936	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16244034	16244112	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17942778	17944168	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17711883	17712069	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16599254	16600279	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17150303	17151628	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16249181	16254341	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17643597	17646367	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16606651	16609402	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17095168	17096475	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16414425	16417030	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16672385	16672426	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17856076	17857762	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17721328	17721413	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17381911	17382356	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17303579	17306666	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17939255	17939991	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17416373	17416917	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17791894	17792146	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17182716	17184870	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16656928	16657044	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18020584	18020716	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17935600	17938924	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17604283	17609260	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16697589	16697682	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17923781	17923923	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17143546	17146577	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17946624	17951696	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17117485	17119711	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16153317	16156028	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18210701	18213661	HSATI|Satellite|Satellite	FAM230C	Lowly	ENCODE Overlap
-chr13	17877701	17877809	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17887934	17890703	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17664615	17669171	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17347058	17351187	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16923463	16927889	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17295139	17297764	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17750720	17753323	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17654891	17657917	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17219173	17219270	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16698050	16700278	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17328621	17328826	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17932523	17933722	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17531675	17534979	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17624570	17628053	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16484559	16486098	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17127062	17130174	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17120016	17120463	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16116481	16116678	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17884216	17887064	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17079136	17081535	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16697688	16698031	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17988261	17988436	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16918603	16921651	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16133786	16137594	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17239848	17243306	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17367784	17369863	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17372849	17378158	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16113312	16116428	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17543368	17544311	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17165760	17168258	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16116799	16116843	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17946055	17946089	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16462827	16463822	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17978596	17979303	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16497927	16500817	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17927090	17930378	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17536172	17536268	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17031820	17031985	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17582870	17585687	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18029662	18029877	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17018417	17020181	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17585846	17585987	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17020904	17021039	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17400299	17405427	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17071688	17074162	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17845879	17848465	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16765152	16767662	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17912704	17915217	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16235967	16243773	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17154977	17158374	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17703323	17705629	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17826681	17832106	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16487849	16488103	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17874543	17877647	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16930162	16931331	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16687382	16691490	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17706732	17709513	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17877832	17878000	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18000459	18005465	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17952346	17954794	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16597142	16599029	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17538263	17541448	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16255195	16257054	Intergenic	FAM230C	Lowly	ENCODE Overlap
-chr13	17318152	17320974	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17148028	17148998	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17206641	17209469	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17007241	17007246	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17309664	17311163	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17032633	17034654	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17642351	17643155	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17679715	17684928	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17878036	17880528	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17718673	17721311	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17026785	17030773	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18030080	18032798	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17410217	17411716	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17113803	17116579	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17999420	18000378	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	109423125	109425342	Intergenic	LINC00399	Lowly	ENCODE Overlap
-chr13	17792424	17795278	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17564083	17565098	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17216765	17218395	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16392184	16394696	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17738851	17745243	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17417100	17417333	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17798860	17802270	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16437130	16439835	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17628400	17631725	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17671567	17672338	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16159974	16162705	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17915249	17915268	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16244242	16246123	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17354483	17356857	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17923002	17923725	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17988560	17991066	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17922091	17922212	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18009819	18013052	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16146408	16149034	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17485116	17487318	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18005756	18008782	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17070384	17071097	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17791405	17791779	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18021232	18022958	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16600613	16601047	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17094313	17094390	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17854761	17855955	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16882765	16884187	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16656324	16656785	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17004782	17007171	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17841209	17842722	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17916147	17917119	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16848379	16848894	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17391380	17393955	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16942345	16944804	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17839923	17841144	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16923061	16923291	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16856329	16856452	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17323756	17325638	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16229236	16235037	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17177841	17180742	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17788889	17790682	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17993993	17998725	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16246475	16246855	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17817804	17822642	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16826275	16827838	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17417958	17419021	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17031088	17031801	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17955477	17956002	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17697792	17700499	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	18025886	18028639	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17756295	17759896	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17860073	17865089	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17263467	17266339	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17515140	17519684	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	16851515	16851797	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17979450	17981547	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17230401	17233567	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17243411	17245204	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17778067	17780938	ALR/Alpha|Satellite|centr	FAM230C	Lowly	ENCODE Overlap
-chr13	17172503	17175298	ALR/Alpha|Satellite|centr	FAM230C	Mappable	ENCODE Overlap
-chr13	17993819	17993835	ALR/Alpha|Satellite|centr	FAM230C	Mappable	ENCODE Overlap
-chr14	16091961	16105537	(ATTCC)n|Simple_repeat|Simple_repeat	OR11H12	Mappable	ENCODE Overlap
-chr14	105230006	105232915	"intron (NM_001242789, intron 1 of 12)"	BRF1	Mappable	ENCODE Overlap
-chr14_GL000225v1_random	105690	136390	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	89351	104131	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	136395	140413	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	1666	8760	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	37408	38072	Intergenic		Lowly	Unique
-chr14_GL000225v1_random	39176	89339	CpG		Lowly	Unique
-chr14_GL000225v1_random	30656	36652	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	9530	30503	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chr14_GL000225v1_random	195384	199785	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr14_KI270723v1_random	33989	38115	Intergenic		Lowly	Unique
-chr14_KI270724v1_random	1	2096	LSAU|Satellite|Satellite		Lowly	Unique
-chr15	19774748	19781046	ALR/Alpha|Satellite|centr	CHEK2P2	Mappable	ENCODE Overlap
-chr15	17079519	17084551	(GGAAT)n|Simple_repeat|Simple_repeat	CHEK2P2	Mappable	ENCODE Overlap
-chr15	19781269	19782029	ALR/Alpha|Satellite|centr	CHEK2P2	Mappable	ENCODE Overlap
-chr16	38264960	38268929	ALR/Alpha|Satellite|centr	LINC02167	Mappable	Unique
-chr16	33335395	33340544	(TGGCTTGGC)n|Simple_repeat|Simple_repeat	LOC105369266	Mappable	ENCODE Overlap
-chr16	90115865	90118991	"intron (NR_126161, intron 3 of 3)"	FAM157C	Mappable	ENCODE Overlap
-chr16	34609198	34611771	Intergenic	CCNYL3	Mappable	ENCODE Overlap
-chr16	38274918	38281137	ALR/Alpha|Satellite|centr	LINC02167	Mappable	ENCODE Overlap
-chr16	46379683	46402990	Intergenic	ANKRD26P1	Mappable	ENCODE Overlap
-chr16	34570511	34577757	(GAATG)n|Satellite|Satellite	CCNYL3	Mappable	ENCODE Overlap
-chr16	34095258	34100789	Intergenic	MIR9901	Mappable	ENCODE Overlap
-chr16	34579966	34597675	Intergenic	CCNYL3	Mappable	ENCODE Overlap
-chr16	34697614	34698226	Intergenic	CCNYL3	Mappable	ENCODE Overlap
-chr16	34061433	34067253	AluYh9|SINE|Alu	MIR9901	Mappable	ENCODE Overlap
-chr17	23015137	23017694	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	26567361	26568148	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	26935184	26941957	(GAATG)n|Satellite|Satellite	LOC105371703	Mappable	ENCODE Overlap
-chr17	25388774	25391334	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	43234260	43235297	promoter-TSS (NR_002716)	RNU2-1	Mappable	ENCODE Overlap
-chr17	22520192	22522698	Intergenic	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	26824538	26827116	Intergenic	LOC105371703	Mappable	ENCODE Overlap
-chr17	25787486	25789678	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	25351848	25354673	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	26827179	26830212	Intergenic	LOC105371703	Mappable	ENCODE Overlap
-chr17	24149445	24152769	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	26624404	26626919	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	25568022	25570460	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	115876	119087	Intergenic	SCGB1C2	Mappable	ENCODE Overlap
-chr17	26602416	26605714	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	23581842	23584984	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	26784244	26785873	Intergenic	LOC105371703	Mappable	ENCODE Overlap
-chr17	43281692	43285869	TTS (NR_002716).8	RNU2-1	Lowly	ENCODE Overlap
-chr17	43232334	43233864	TTS (NR_002716)	RNU2-1	Lowly	ENCODE Overlap
-chr17	25571866	25574916	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	43276929	43279827	promoter-TSS (NR_002716).7	RNU2-1	Mappable	ENCODE Overlap
-chr17	26872121	26872359	(GAATG)n|Satellite|Satellite	LOC105371703	Mappable	ENCODE Overlap
-chr17	21851874	21854502	(AATGG)n|Simple_repeat|Simple_repeat	KCNJ18	Mappable	ENCODE Overlap
-chr17	26593506	26597692	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	26139235	26142549	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	23067523	23070190	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	25382608	25385005	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	26547832	26550522	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	43250513	43253389	promoter-TSS (NR_002716).5	RNU2-1	Mappable	ENCODE Overlap
-chr17	1062389	1066145	"intron (NM_001322840, intron 10 of 22).2"	ABR	Mappable	ENCODE Overlap
-chr17	24186508	24189789	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	43287867	43290714	Intergenic	RNU2-1	Mappable	ENCODE Overlap
-chr17	25073233	25075710	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	26878005	26886980	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	313684	316768	"intron (NM_006987, intron 5 of 9).2"	LOC100506388	Mappable	ENCODE Overlap
-chr17	43245212	43247867	promoter-TSS (NR_002716).4	RNU2-1	Mappable	ENCODE Overlap
-chr17	22976412	22977953	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	43264248	43267017	L1PA8|LINE|L1	RNU2-1	Mappable	ENCODE Overlap
-chr17	21856405	21856412	(AATGG)n|Simple_repeat|Simple_repeat	KCNJ18	Mappable	ENCODE Overlap
-chr17	23189141	23191663	ALR/Alpha|Satellite|centr	MTRNR2L1	Mappable	ENCODE Overlap
-chr17	26618168	26621523	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	25919036	25921580	ALR/Alpha|Satellite|centr	LOC105371703	Mappable	ENCODE Overlap
-chr17	21967190	21993012	(ATGGA)n|Simple_repeat|Simple_repeat	UBBP4	Mappable	ENCODE Overlap
-chr17	26854870	26856944	(TGGAA)n|Simple_repeat|Simple_repeat	LOC105371703	Mappable	ENCODE Overlap
-chr17	121351	125557	L1MC3|LINE|L1	SCGB1C2	Mappable	ENCODE Overlap
-chr17_GL000205v2_random	86989	90907	Intergenic	MGC70870	Lowly	Unique
-chr17_GL000205v2_random	26	3428	CER|Satellite|Satellite	MGC70870	Lowly	Unique
-chr17_GL000205v2_random	7379	7759	CER|Satellite|Satellite	MGC70870	Lowly	Unique
-chr17_GL000205v2_random	3848	7071	CER|Satellite|Satellite	MGC70870	Lowly	Unique
-chr17_KI270729v1_random	160013	162123	Intergenic		Lowly	Unique
-chr17_KI270729v1_random	19213	29747	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr17_KI270729v1_random	45511	48698	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr17_KI270729v1_random	1	7213	(TTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr17_KI270729v1_random	9482	14680	(ATTCC)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr17_KI270729v1_random	55466	60276	(GAATGGAATG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr17_KI270730v1_random	101867	111086	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr17_KI270730v1_random	95356	100621	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr17_KI270730v1_random	80509	93823	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr18	9028	11550	(CCCTAA)n|Simple_repeat|Simple_repeat	LINC02564	Mappable	ENCODE Overlap
-chr18	20560617	20563418	ALR/Alpha|Satellite|centr	ROCK1	Mappable	ENCODE Overlap
-chr18	105276	113531	"non-coding (NR_033770, exon 1 of 5)"	ROCK1P1	Mappable	ENCODE Overlap
-chr18	79618344	79620846	Intergenic	LOC284240	Mappable	ENCODE Overlap
-chr19	54188605	54191272	promoter-TSS (NM_001146056).2	MBOAT7	Mappable	ENCODE Overlap
-chr19	36279514	36282602	SST1|Satellite|centr	LOC100134317	Mappable	ENCODE Overlap
-chr19	37291909	37295660	(ACAG)n|Simple_repeat|Simple_repeat	ZNF875	Lowly	ENCODE Overlap
-chr19	7449308	7452123	"intron (NM_001130955, intron 5 of 19)"	ARHGEF18	Mappable	ENCODE Overlap
-chr19	37290463	37291465	CpG	ZNF875	Mappable	ENCODE Overlap
-chr19	36300186	36303419	SST1|Satellite|centr	LOC100134317	Mappable	ENCODE Overlap
-chr19	24890430	24896738	ALR/Alpha|Satellite|centr	HAVCR1P1	Mappable	Unique
-chr2	89822969	89823237	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	89818404	89821968	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	89814061	89814505	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	89810575	89813442	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	89814629	89817620	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	91420365	91423530	Intergenic	LSP1P4	Mappable	ENCODE Overlap
-chr2	89805597	89807370	(ATCAAATGGA)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr2	90379564	90403503	Intergenic	LOC101927050	Mappable	ENCODE Overlap
-chr2	89823396	89842268	(ATTCC)n|Simple_repeat|Simple_repeat	LOC101927050	Mappable	ENCODE Overlap
-chr20	31232160	31233573	Intergenic	DEFB115	Mappable	ENCODE Overlap
-chr20	31176519	31179840	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Lowly	ENCODE Overlap
-chr20	28818144	28818512	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	28511375	28514724	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	28784667	28786930	ALR/Alpha|Satellite|centr	FRG1CP	Lowly	ENCODE Overlap
-chr20	31181856	31189491	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	28516883	28518637	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	28815563	28816341	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	31228459	31231680	Intergenic	DEFB115	Lowly	ENCODE Overlap
-chr20	27180808	27182094	ALR/Alpha|Satellite|centr	MIR663AHG	Mappable	ENCODE Overlap
-chr20	28839720	28842865	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	26540721	26543455	ALR/Alpha|Satellite|centr	MIR663AHG	Mappable	ENCODE Overlap
-chr20	29884447	29885678	ALR/Alpha|Satellite|centr	MIR4477A	Mappable	ENCODE Overlap
-chr20	31050520	31077638	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	28888219	28891252	Intergenic	FRG1DP	Mappable	ENCODE Overlap
-chr20	26489265	26489874	ALR/Alpha|Satellite|centr	MIR663AHG	Mappable	ENCODE Overlap
-chr20	31224415	31227417	Intergenic	DEFB115	Mappable	ENCODE Overlap
-chr20	28819957	28823272	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	26601374	26608712	ALR/Alpha|Satellite|centr	MIR663AHG	Mappable	ENCODE Overlap
-chr20	28805290	28808241	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	31239887	31243476	Intergenic	DEFB115	Mappable	ENCODE Overlap
-chr20	31166568	31167807	(AATGG)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	29261354	29264856	ALR/Alpha|Satellite|centr	FRG2EP	Mappable	Unique
-chr20	28307014	28309467	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	28781706	28784563	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	31170535	31172967	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	31168211	31169703	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	28896358	28899883	(CCATT)n|Simple_repeat|Simple_repeat	FRG1DP	Mappable	ENCODE Overlap
-chr20	31090368	31091746	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	31173003	31173426	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	31156073	31160110	(TGGAA)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	59234	67210	Intergenic	DEFB125	Mappable	ENCODE Overlap
-chr20	28493663	28499706	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	29121594	29123538	MER5A1|DNA|hAT-Charlie	FRG1DP	Mappable	ENCODE Overlap
-chr20	31190204	31190333	(GGAAT)n|Simple_repeat|Simple_repeat	DEFB115	Mappable	ENCODE Overlap
-chr20	28548723	28550182	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr20	28787339	28787377	ALR/Alpha|Satellite|centr	FRG1CP	Mappable	ENCODE Overlap
-chr21	10653993	10663675	(TCCATTCCAT)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10699029	10699402	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10428560	10428597	"intron (NM_001187, intron 3 of 4)"	BAGE2	Mappable	ENCODE Overlap
-chr21	7256313	7262762	(TGGAA)n|Simple_repeat|Simple_repeat	LOC102724219	Mappable	ENCODE Overlap
-chr21	10687705	10698999	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10683389	10686769	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10700414	10710804	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10268901	10273604	(TA)n|Simple_repeat|Simple_repeat	BAGE	Mappable	ENCODE Overlap
-chr21	9245189	9250252	Intergenic	TEKT4P2	Mappable	ENCODE Overlap
-chr21	10752005	10756855	ALR/Alpha|Satellite|centr	TPTE	Mappable	ENCODE Overlap
-chr21	10719044	10720169	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10796208	10798236	ALR/Alpha|Satellite|centr	TPTE	Mappable	Unique
-chr21	10729126	10738634	(TCCAT)n|Simple_repeat|Simple_repeat	TPTE	Mappable	Unique
-chr21	10391655	10393390	L2|LINE|L2	BAGE	Mappable	ENCODE Overlap
-chr21	10798373	10799432	ALR/Alpha|Satellite|centr	TPTE	Mappable	ENCODE Overlap
-chr21	8808979	8812258	ACRO1|Satellite|acro	MIR3648-1	Mappable	ENCODE Overlap
-chr21	7932046	7935094	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	KCNE1B	Mappable	ENCODE Overlap
-chr21	10361620	10363358	L1MA2|LINE|L1	BAGE	Mappable	ENCODE Overlap
-chr21	7935422	7940005	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	KCNE1B	Mappable	ENCODE Overlap
-chr21	7914978	7919785	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	KCNE1B	Mappable	ENCODE Overlap
-chr21	8201552	8261964	AluSz|SINE|Alu	MIR6724-4	Mappable	ENCODE Overlap
-chr21	10710911	10718875	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10720474	10728504	(TCCAT)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10804494	10807620	ALR/Alpha|Satellite|centr	TPTE	Mappable	ENCODE Overlap
-chr21	5326890	5330910	AluYj4|SINE|Alu	LOC102724159	Mappable	ENCODE Overlap
-chr21	6368536	6373565	Intergenic	CBS	Mappable	ENCODE Overlap
-chr21	7940721	7945695	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	KCNE1B	Mappable	ENCODE Overlap
-chr21	10665364	10681351	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	7922196	7931111	(ATTCCATTCC)n|Simple_repeat|Simple_repeat	KCNE1B	Mappable	ENCODE Overlap
-chr21	10807667	10808020	ALR/Alpha|Satellite|centr	TPTE	Mappable	ENCODE Overlap
-chr21	10800154	10800890	ALR/Alpha|Satellite|centr	TPTE	Mappable	ENCODE Overlap
-chr21	7946160	7958748	(CATTC)n|Satellite|Satellite	KCNE1B	Mappable	ENCODE Overlap
-chr21	8985911	8989787	TTS (NR_037421).2	MIR10396A	Mappable	ENCODE Overlap
-chr21	10324539	10327338	HSATI|Satellite|Satellite	BAGE	Mappable	ENCODE Overlap
-chr21	10686799	10686855	(TTCCA)n|Simple_repeat|Simple_repeat	TPTE	Mappable	ENCODE Overlap
-chr21	10426777	10428455	"intron (NM_001187, intron 3 of 4)"	BAGE2	Mappable	ENCODE Overlap
-chr21	8384656	8473309	AluSp|SINE|Alu	MIR6724-1	Mappable	ENCODE Overlap
-chr22	11210160	11215577	SAR|Satellite|Satellite	FRG1FP	Mappable	ENCODE Overlap
-chr22	18729480	18731694	AluSc8|SINE|Alu	FAM230E	Mappable	ENCODE Overlap
-chr22	12174634	12177777	ACRO1|Satellite|acro	LOC102723769	Mappable	ENCODE Overlap
-chr22	12690973	12694171	BSR/Beta|Satellite|Satellite	LOC102723769	Mappable	ENCODE Overlap
-chr22	18895123	18897647	AluSc8|SINE|Alu	FAM230F	Mappable	ENCODE Overlap
-chr22	50806876	50809467	(AGGGTT)n|Simple_repeat|Simple_repeat	RPL23AP82	Mappable	ENCODE Overlap
-chr22	11022253	11024389	Intergenic	FRG1FP	Mappable	ENCODE Overlap
-chr22	16345779	16354945	(GGAAT)n|Simple_repeat|Simple_repeat	CCT8L2	Mappable	ENCODE Overlap
-chr22	11367998	11371880	ALR/Alpha|Satellite|centr	FRG1FP	Mappable	ENCODE Overlap
-chr22	10716070	10731276	(TCCATTCCAT)n|Simple_repeat|Simple_repeat	FRG1FP	Mappable	ENCODE Overlap
-chr22	16356082	16361451	(GGAAT)n|Simple_repeat|Simple_repeat	CCT8L2	Mappable	ENCODE Overlap
-chr22	11812787	11816849	ACRO1|Satellite|acro	LOC102723769	Mappable	ENCODE Overlap
-chr22_KI270733v1_random	117288	179772	AluSz|SINE|Alu	RNA28SN2	Lowly	Unique
-chr22_KI270734v1_random	120388	122914	AluSc8|SINE|Alu	LOC102724770	Lowly	Unique
-chr22_KI270735v1_random	38514	42811	(ATTCC)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	86945	87728	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	47146	51395	(TGGAGTGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	63231	66185	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	81973	86084	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	136134	140350	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr22_KI270736v1_random	131362	135297	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	76967	77087	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	161047	164535	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr22_KI270736v1_random	165492	168910	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	51786	54840	(TGGAGTGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	153598	154722	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr22_KI270736v1_random	144303	153354	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr22_KI270736v1_random	95664	105091	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	109434	110514	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	128647	129777	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	111003	115086	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	169771	176702	Intergenic		Lowly	Unique
-chr22_KI270736v1_random	178428	181920	Intergenic		Lowly	Unique
-chr22_KI270736v1_random	88590	92411	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	129980	130603	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	230	3329	(ATGGA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	154901	159132	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chr22_KI270736v1_random	60991	62109	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	58693	60667	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	115254	122892	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	77202	81530	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	72297	75263	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270736v1_random	123794	128009	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270737v1_random	79010	80504	Intergenic		Lowly	Unique
-chr22_KI270737v1_random	30421	40521	(TCCAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr22_KI270737v1_random	23114	29485	(TCCAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chr3	93469362	93471801	SAR|Satellite|Satellite	PROS1	Mappable	ENCODE Overlap
-chr3	93711664	93712437	ALR/Alpha|Satellite|centr	PROS1	Mappable	ENCODE Overlap
-chr3	91548591	91554130	ALR/Alpha|Satellite|centr	PROS1	Mappable	ENCODE Overlap
-chr3	197389421	197389902	Intergenic	DLG1	Mappable	ENCODE Overlap
-chr3	198172030	198174477	(AGGGTT)n|Simple_repeat|Simple_repeat	FAM157A	Mappable	ENCODE Overlap
-chr3	198167382	198170281	"intron (NR_146164, intron 4 of 17)"	FAM157A	Lowly	ENCODE Overlap
-chr3	9002	11842	(CTAACC)n|Simple_repeat|Simple_repeat	LINC01986	Mappable	ENCODE Overlap
-chr3	93706888	93710048	ALR/Alpha|Satellite|centr	PROS1	Mappable	ENCODE Overlap
-chr3	75667816	75670647	CpG	LINC00960	Mappable	ENCODE Overlap
-chr3	96616287	96619133	Intergenic	EPHA6	Mappable	ENCODE Overlap
-chr4	49322045	49325033	ACRO1|Satellite|acro	CWH43	Mappable	ENCODE Overlap
-chr4	49630300	49659095	(GAATG)n|Satellite|Satellite	CWH43	Mappable	ENCODE Overlap
-chr4	49708071	49712961	SAR|Satellite|Satellite	CWH43	Mappable	ENCODE Overlap
-chr4	190175302	190182802	BSR/Beta|Satellite|Satellite	DUX4	Mappable	ENCODE Overlap
-chr4	190082751	190083066	CpG	DUX4	Mappable	ENCODE Overlap
-chr4	190020660	190023773	CpG	FRG2	Mappable	ENCODE Overlap
-chr4	1433989	1436603	Intergenic	NKX1-1	Mappable	ENCODE Overlap
-chr4	190121457	190124076	(AGGGTT)n|Simple_repeat|Simple_repeat	DUX4	Mappable	ENCODE Overlap
-chr4	49090233	49157664	(TCCAT)n|Simple_repeat|Simple_repeat	CWH43	Lowly	ENCODE Overlap
-chr4	51106159	51108566	SAR|Satellite|Satellite	DCUN1D4	Mappable	ENCODE Overlap
-chr4	49510010	49516194	(CA)n|Simple_repeat|Simple_repeat	CWH43	Mappable	ENCODE Overlap
-chr4_GL000008v2_random	1	8337	Intergenic	ANKRD20A12P	Lowly	Unique
-chr5	9009	12786	(TAACCC)n|Simple_repeat|Simple_repeat	PLEKHG4B	Mappable	ENCODE Overlap
-chr5	49620931	49628481	ALR/Alpha|Satellite|centr	EMB	Mappable	ENCODE Overlap
-chr5	80649491	80652837	promoter-TSS (NM_001190470)	MTRNR2L2	Mappable	ENCODE Overlap
-chr5	50139509	50139815	ALR/Alpha|Satellite|centr	EMB	Mappable	ENCODE Overlap
-chr5	17591996	17597406	MLT1E3|LTR|ERVL-MaLR	H3.Y	Lowly	ENCODE Overlap
-chr5	17524212	17529170	Intergenic	LINC02218	Mappable	ENCODE Overlap
-chr5	34188278	34193784	"non-coding (NR_157803, exon 1 of 1)"	LOC646652	Mappable	ENCODE Overlap
-chr5	134924083	134928692	"intron (NM_032151, intron 2 of 3)"	PCBD2	Mappable	ENCODE Overlap
-chr5	17597460	17599261	Intergenic	H3.Y	Mappable	ENCODE Overlap
-chr5	49598396	49604131	(TGGAA)n|Simple_repeat|Simple_repeat	EMB	Mappable	ENCODE Overlap
-chr5	17584091	17585523	Intergenic	H3.Y	Mappable	ENCODE Overlap
-chr5	49629731	49634740	ALR/Alpha|Satellite|centr	EMB	Mappable	ENCODE Overlap
-chr5	34186729	34187148	"intron (NR_146599, intron 2 of 11)"	LOC646652	Mappable	ENCODE Overlap
-chr5	47295868	47300778	ALR/Alpha|Satellite|centr	HCN1	Mappable	ENCODE Overlap
-chr5	2144865	2147341	Intergenic	LOC100506858	Mappable	ENCODE Overlap
-chr5	49665174	49668431	(CATTC)n|Satellite|Satellite	EMB	Mappable	ENCODE Overlap
-chr5	50141319	50141921	ALR/Alpha|Satellite|centr	EMB	Mappable	ENCODE Overlap
-chr5	49608847	49619600	ALR/Alpha|Satellite|centr	EMB	Mappable	ENCODE Overlap
-chr5	49640990	49647802	ALR/Alpha|Satellite|centr	EMB	Lowly	ENCODE Overlap
-chr5	17517750	17523690	AluSx|SINE|Alu	LINC02218	Mappable	ENCODE Overlap
-chr5	49655272	49662871	(TCCAT)n|Simple_repeat|Simple_repeat	EMB	Mappable	ENCODE Overlap
-chr5	47306576	47310036	ALR/Alpha|Satellite|centr	HCN1	Mappable	ENCODE Overlap
-chr5_GL000208v1_random	90558	92621	ALR/Alpha|Satellite|centr		Lowly	Unique
-chr6	157309365	157315191	"intron (NM_018452, intron 3 of 3)"	TMEM242	Mappable	ENCODE Overlap
-chr6	59718138	59718529	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Mappable	ENCODE Overlap
-chr6	170397348	170400442	"intron (NM_001286381, intron 7 of 8).2"	MIR4644	Lowly	ENCODE Overlap
-chr6	862141	864174	Intergenic	LOC101927691	Mappable	ENCODE Overlap
-chr6	59640507	59641284	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Lowly	ENCODE Overlap
-chr6	58783432	58784719	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Lowly	ENCODE Overlap
-chr6	58996337	58998871	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Mappable	ENCODE Overlap
-chr6	58793187	58793265	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Mappable	ENCODE Overlap
-chr6	58784734	58786253	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Lowly	ENCODE Overlap
-chr6	58792241	58793118	ALR/Alpha|Satellite|centr	LINC00680-GUSBP4	Mappable	ENCODE Overlap
-chr6	60231805	60232035	ALR/Alpha|Satellite|centr	MTRNR2L9	Mappable	ENCODE Overlap
-chr6	370247	373135	(AGCAGC)n|Simple_repeat|Simple_repeat	IRF4	Mappable	ENCODE Overlap
-chr7	57495340	57497718	Intergenic	ZNF716	Mappable	ENCODE Overlap
-chr7	60309518	60312051	ALR/Alpha|Satellite|centr	ZNF716	Mappable	ENCODE Overlap
-chr7	58034763	58037384	Intergenic	ZNF716	Mappable	ENCODE Overlap
-chr7	100956534	100959960	"exon (NM_005960, exon 2 of 12)"	MUC3A	Mappable	ENCODE Overlap
-chr7	158914463	158916767	"intron (NM_001350918, intron 16 of 26)"	WDR60	Mappable	ENCODE Overlap
-chr7	58032104	58034587	Intergenic	ZNF716	Mappable	ENCODE Overlap
-chr7	57493144	57494128	Intergenic	ZNF716	Lowly	ENCODE Overlap
-chr7	61055086	61056354	Intergenic	ZNF733P	Lowly	ENCODE Overlap
-chr7	62349293	62351966	Intergenic	ZNF733P	Mappable	ENCODE Overlap
-chr7	57486422	57491361	Intergenic	ZNF716	Mappable	ENCODE Overlap
-chr7	158145977	158150149	"intron (NM_130843, intron 6 of 21)"	LOC100506585	Mappable	ENCODE Overlap
-chr7	56369384	56375717	Intergenic	LOC650226	Mappable	ENCODE Overlap
-chr7	65488410	65491158	(CCATT)n|Simple_repeat|Simple_repeat	LOC101929322	Mappable	ENCODE Overlap
-chr7	59292148	59293599	ALR/Alpha|Satellite|centr	ZNF716	Mappable	ENCODE Overlap
-chr7	58796711	58798922	ALR/Alpha|Satellite|centr	ZNF716	Mappable	ENCODE Overlap
-chr8	85783148	85787786	Intergenic	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85763464	85765991	promoter-TSS (NR_003594).6	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85794512	85818706	Intergenic	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85725563	85725893	Intergenic	REXO1L2P	Lowly	ENCODE Overlap
-chr8	43236617	43243359	SAR|Satellite|Satellite	POTEA	Mappable	ENCODE Overlap
-chr8	85646151	85663321	"non-coding (NR_003594, exon 1 of 1)"	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85731042	85746666	L1PA5|LINE|L1	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85768408	85778392	L1PA5|LINE|L1	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85820021	85822957	L1MA8|LINE|L1	REXO1L2P	Lowly	ENCODE Overlap
-chr8	85714761	85722035	L1PA5|LINE|L1	REXO1L2P	Lowly	ENCODE Overlap
-chr8	85825873	85828618	"non-coding (NR_003594, exon 1 of 1).10"	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85755743	85762636	L1PA5|LINE|L1	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85788653	85793679	"non-coding (NR_003594, exon 1 of 1).8"	REXO1L2P	Mappable	ENCODE Overlap
-chr8	85793779	85794442	Intergenic	REXO1L2P	Lowly	ENCODE Overlap
-chr9	60631611	60632719	ALR/Alpha|Satellite|centr	SPATA31A5	Mappable	ENCODE Overlap
-chr9	43944548	43947643	ALR/Alpha|Satellite|centr	LOC102724904	Mappable	ENCODE Overlap
-chr9	60610639	60611482	ALR/Alpha|Satellite|centr	SPATA31A5	Mappable	ENCODE Overlap
-chr9	137326772	137329485	"intron (NM_017820, intron 17 of 21)"	NRARP	Mappable	ENCODE Overlap
-chr9	41229428	41231548	Intergenic	MIR4477A	Mappable	ENCODE Overlap
-chr9	40911805	40913197	CER|Satellite|Satellite	MIR1299	Mappable	ENCODE Overlap
-chr9	43317735	43320170	(TTCGA)n|Simple_repeat|Simple_repeat	LOC102724904	Mappable	ENCODE Overlap
-chr9	61855439	61858036	SST1|Satellite|centr	FAM27C	Mappable	ENCODE Overlap
-chr9	138230383	138234257	"intron (NR_146178, intron 5 of 14)"	FAM157B	Mappable	ENCODE Overlap
-chrM	1	16569	promoter-TSS (NR_162149).2	MIR12136	Lowly	ENCODE Overlap
-chrUn_GL000195v1	31055	32367	Intergenic	LOC389831	Lowly	Unique
-chrUn_GL000214v1	63140	66720	Intergenic		Lowly	Unique
-chrUn_GL000214v1	116380	137718	Intergenic		Lowly	Unique
-chrUn_GL000216v2	52643	53625	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	59665	59760	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	47923	48574	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	75829	81867	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	39980	43542	(CATTC)n|Satellite|Satellite		Lowly	Unique
-chrUn_GL000216v2	68368	74161	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	1	31022	(CATTC)n|Satellite|Satellite		Lowly	Unique
-chrUn_GL000216v2	44910	47898	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	60966	60982	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	137856	143789	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chrUn_GL000216v2	61141	67547	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	144039	144681	Intergenic		Lowly	Unique
-chrUn_GL000216v2	82320	86892	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	50490	50550	(TTCCATTCCA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_GL000216v2	144999	173107	BSR/Beta|Satellite|Satellite		Lowly	Unique
-chrUn_GL000216v2	33316	39801	(CATTC)n|Satellite|Satellite		Lowly	Unique
-chrUn_GL000220v1	100564	161802	(TCTC)n|Simple_repeat|Simple_repeat	MIR6724-1	Lowly	Unique
-chrUn_GL000224v1	1	20377	L1MB8|LINE|L1	LOC100505874	Lowly	Unique
-chrUn_GL000226v1	1	15008	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270303v1	1	1942	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270304v1	1	2165	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270310v1	1	1201	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270311v1	1	2240	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270317v1	135	2580	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270317v1	35352	37690	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270330v1	1	1652	L1MB8|LINE|L1		Lowly	Unique
-chrUn_KI270333v1	1	2699	SAR|Satellite|Satellite		Lowly	Unique
-chrUn_KI270336v1	1	1026	SAR|Satellite|Satellite		Lowly	Unique
-chrUn_KI270337v1	1	1121	SAR|Satellite|Satellite		Lowly	Unique
-chrUn_KI270411v1	1	2646	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270435v1	90752	92983	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270435v1	94	3221	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270438v1	45534	48569	(GGAAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270438v1	68235	72651	(GGAATGGAAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270438v1	78544	79227	(GGAATGGAAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270438v1	66554	68124	(GGAATGGAAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270438v1	99571	112505	(GGAATGGAAT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	39052	44270	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	32884	34371	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	1	1666	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	67250	72057	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	45626	46874	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	12306	15717	(GAATG)n|Satellite|Satellite		Lowly	Unique
-chrUn_KI270442v1	31259	32442	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	99605	100217	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270442v1	73967	78664	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	22807	26003	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270442v1	78839	98090	(AATGG)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270465v1	1	1774	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270466v1	1	1233	SAR|Satellite|Satellite		Lowly	Unique
-chrUn_KI270467v1	1	3920	SAR|Satellite|Satellite		Lowly	Unique
-chrUn_KI270512v1	20303	22689	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270519v1	135213	138126	(TGGAA)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270519v1	82280	82552	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270519v1	134919	134971	L1PA4|LINE|L1		Lowly	Unique
-chrUn_KI270519v1	87087	87726	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270519v1	83709	84963	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270519v1	85036	85246	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270538v1	52315	55319	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270538v1	82664	85364	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270538v1	87289	90766	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270538v1	79641	82654	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270544v1	1	1202	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270589v1	40521	44474	(CATTC)n|Satellite|Satellite		Lowly	Unique
-chrUn_KI270590v1	1791	4364	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270591v1	3788	5796	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270743v1	150742	153388	ACRO1|Satellite|acro		Lowly	Unique
-chrUn_KI270743v1	155199	157860	ACRO1|Satellite|acro		Lowly	Unique
-chrUn_KI270744v1	104492	126444	Intergenic		Lowly	Unique
-chrUn_KI270744v1	10020	15078	Intergenic		Lowly	Unique
-chrUn_KI270751v1	148528	150742	L1P1|LINE|L1		Lowly	Unique
-chrUn_KI270751v1	37373	41073	Intergenic		Lowly	Unique
-chrUn_KI270754v1	37970	40191	SST1|Satellite|centr		Lowly	Unique
-chrUn_KI270756v1	13229	17851	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	63263	65792	Intergenic		Lowly	Unique
-chrUn_KI270756v1	23904	23957	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	60584	60646	Intergenic		Lowly	Unique
-chrUn_KI270756v1	61107	61240	Intergenic		Lowly	Unique
-chrUn_KI270756v1	24602	28567	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	1	8666	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	17930	19177	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	45923	49371	Intergenic		Lowly	Unique
-chrUn_KI270756v1	53222	53315	Intergenic		Lowly	Unique
-chrUn_KI270756v1	29479	30611	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	74181	75098	Intergenic		Lowly	Unique
-chrUn_KI270756v1	20853	23813	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	41049	44746	Intergenic		Lowly	Unique
-chrUn_KI270756v1	20484	20705	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270756v1	57080	60437	Intergenic		Lowly	Unique
-chrUn_KI270756v1	12442	13205	(CCATTCCATT)n|Simple_repeat|Simple_repeat		Lowly	Unique
-chrUn_KI270757v1	59339	62855	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	69004	69630	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	58790	58869	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	64050	68303	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	68531	68702	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	58678	58783	ALR/Alpha|Satellite|centr		Lowly	Unique
-chrUn_KI270757v1	13326	17787	AluYj4|SINE|Alu		Lowly	Unique
-chrX	115731592	115734123	CpG	DANT1	Lowly	ENCODE Overlap
-chrX	115727364	115729136	CpG	DANT1	Lowly	ENCODE Overlap
-chrX	267916	270529	Intergenic	PLCXD1	Mappable	ENCODE Overlap
-chrX	156029043	156031753	(TTAGGG)n|Simple_repeat|Simple_repeat	DDX11L16	Mappable	ENCODE Overlap
-chrX	270737	271685	Intergenic	PLCXD1	Lowly	ENCODE Overlap
-chrY	10886323	10890931	(TTCCA)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11316283	11316300	Intergenic	GYG2P1	Mappable	ENCODE Overlap
-chrY	10858033	10859502	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11308226	11316021	BSR/Beta|Satellite|Satellite	GYG2P1	Mappable	ENCODE Overlap
-chrY	11012810	11016490	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10878587	10881982	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10931592	10932136	(TTCCA)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10753641	10757873	FRAM|SINE|Alu	TTTY23	Mappable	ENCODE Overlap
-chrY	10956930	10957024	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10661754	10661806	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10758153	10766392	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10746721	10753487	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10920106	10922590	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10774388	10778018	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10778911	10782860	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10894385	10895918	(TTCCA)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10954990	10956549	(TCCAC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10840925	10841313	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11686805	11691549	Intergenic	GYG2P1	Mappable	ENCODE Overlap
-chrY	10820442	10823253	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10981359	10990942	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10681540	10688008	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	11720926	11724374	(GAATG)n|Satellite|Satellite	GYG2P1	Mappable	ENCODE Overlap
-chrY	10969891	10973436	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10646251	10650980	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	56824781	56852466	BSR/Beta|Satellite|Satellite	SPRY3	Mappable	ENCODE Overlap
-chrY	11003946	11005824	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10794838	10810653	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Lowly	ENCODE Overlap
-chrY	10898026	10900773	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10883316	10886262	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10784961	10787467	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10794605	10794735	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10766649	10766865	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	26638739	26641562	(AATGG)n|Simple_repeat|Simple_repeat	TTTY3	Mappable	ENCODE Overlap
-chrY	10948249	10952190	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10841985	10843556	(TCCAT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10911064	10913946	BSR/Beta|Satellite|Satellite	TTTY23	Mappable	ENCODE Overlap
-chrY	11030435	11031351	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10957101	10960925	(CATTC)n|Satellite|Satellite	TTTY23	Mappable	ENCODE Overlap
-chrY	10628917	10632667	AluYj4|SINE|Alu	TTTY23	Lowly	ENCODE Overlap
-chrY	10998021	11001808	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10890947	10891357	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10767048	10774082	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11289677	11307587	(ATTCC)n|Simple_repeat|Simple_repeat	GYG2P1	Mappable	ENCODE Overlap
-chrY	10923983	10929299	(TTCCA)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11021350	11022613	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10991016	10991138	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10665517	10668057	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	11745782	11749552	(GAATG)n|Satellite|Satellite	GYG2P1	Mappable	ENCODE Overlap
-chrY	10824136	10826667	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11316916	11335434	BSR/Beta|Satellite|Satellite	GYG2P1	Lowly	ENCODE Overlap
-chrY	10891370	10894050	SVA_C|Retroposon|SVA	TTTY23	Mappable	ENCODE Overlap
-chrY	11002737	11003086	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10866943	10870405	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10943432	10946724	(TTCCA)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	11023543	11023560	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10932277	10941762	Intergenic	TTTY23	Mappable	ENCODE Overlap
-chrY	10992538	10994331	AluJo|SINE|Alu	TTTY23	Mappable	ENCODE Overlap
-chrY	10655846	10661087	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10766897	10766903	(CCATT)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
-chrY	10788274	10794462	(ATTCC)n|Simple_repeat|Simple_repeat	TTTY23	Mappable	ENCODE Overlap
\ No newline at end of file
+chr1	124610979	124625614
+chr1	124347449	124349827
+chr1	123681389	123697714
+chr1	124755617	124756133
+chr1	228644488	228646810
+chr1	122763761	122771648
+chr1	123074471	123077388
+chr1	123698751	123699028
+chr1	124082237	124085912
+chr1	124195003	124199252
+chr1	122822805	122852412
+chr1	124079072	124081761
+chr1	124637048	124650716
+chr1	123923101	123930829
+chr1	123947775	123954907
+chr1	2651096	2657690
+chr1	123772279	123772518
+chr1	123888372	123895580
+chr1	124132073	124137242
+chr1	123421242	123424555
+chr1	122792518	122792713
+chr1	123575612	123580150
+chr1	123730701	123737589
+chr1	124192450	124193252
+chr1	122864530	122892414
+chr1	123457393	123461993
+chr1	124416522	124429776
+chr1	124488952	124492689
+chr1	123761364	123765317
+chr1	122974321	122975357
+chr1	124573689	124577060
+chr1	2660041	2662057
+chr1	124666337	124666578
+chr1	124444870	124447910
+chr1	124628401	124632935
+chr1	123955788	123976252
+chr1	123749402	123749623
+chr1	123788987	123792333
+chr1	123353813	123358798
+chr1	123487838	123493348
+chr1	124185193	124186084
+chr1	121742016	121776960
+chr1	124389047	124390123
+chr1	248944611	248947412
+chr1	16615621	16615795
+chr1	124162104	124174735
+chr1	123769824	123771521
+chr1	122976387	122979388
+chr1	124046457	124046514
+chr1	123828506	123829677
+chr1	124487499	124487838
+chr1	123454191	123456805
+chr1	123831264	123840597
+chr1	123866133	123870135
+chr1	123207871	123216816
+chr1	123067262	123071930
+chr1	123671098	123680501
+chr1	123680799	123681034
+chr1	123787966	123788535
+chr1	143183597	143277030
+chr1	123841498	123841592
+chr1	123777239	123787683
+chr1	123004659	123060219
+chr1	123410850	123411000
+chr1	122967648	122973395
+chr1	228608508	228616048
+chr1	124312508	124313152
+chr1	2663197	2666377
+chr1	124037252	124040943
+chr1	2658437	2659484
+chr1	123638914	123647813
+chr1	122758317	122763284
+chr1	123310280	123312959
+chr1	123944700	123947541
+chr1	2696387	2697700
+chr1	123993045	123993143
+chr1	228616110	228616994
+chr1	123809159	123825290
+chr1	123700538	123701366
+chr1	123292604	123293199
+chr1	124524705	124536570
+chr1	122853507	122863783
+chr1	124396134	124398614
+chr1	124462900	124469384
+chr1	789517	792613
+chr1	122565737	122597777
+chr1	122660352	122712552
+chr1	123465637	123470989
+chr1	16512350	16514335
+chr1	124711528	124748035
+chr1	123515909	123517288
+chr1	122906144	122915306
+chr1	123871258	123876903
+chr1	123990369	123992936
+chr1	123449989	123452433
+chr1	123658013	123658426
+chr1	161460728	161466377
+chr1	124430835	124441228
+chr1	124633057	124633319
+chr1	123757476	123761007
+chr1	124652111	124665269
+chr1	123124556	123125047
+chr1	123793121	123804898
+chr1	123319246	123324771
+chr1	123314679	123317444
+chr1	123387599	123390748
+chr1	124303939	124311225
+chr1	124558602	124573677
+chr1	2675075	2675937
+chr1	122813930	122821753
+chr1	122892854	122906013
+chr1	123183593	123187242
+chr1	124594049	124605596
+chr1	16614858	16615354
+chr1	122599644	122617908
+chr1	2755311	2760203
+chr1	123955043	123955348
+chr1	123295606	123295739
+chr1	124024633	124024799
+chr1	123633969	123634047
+chr1	122502392	122558766
+chr1	123904701	123908708
+chr1	2676476	2689992
+chr1	124593326	124593327
+chr1	124243016	124255477
+chr1	124193388	124194092
+chr1	122812476	122812926
+chr1	123187448	123187650
+chr1	123246292	123252731
+chr1	123345950	123353178
+chr1	123908832	123909015
+chr1	123865900	123866108
+chr1	123880442	123887992
+chr1	124605974	124606640
+chr1	123478972	123483857
+chr1	124127325	124131808
+chr1	123392121	123395225
+chr1	122655572	122659623
+chr1	16725841	16728094
+chr1	123471069	123472466
+chr1	123257533	123267929
+chr1	123487155	123487680
+chr1	123878887	123880095
+chr1	123721481	123724576
+chr1	123293396	123293989
+chr1	123648151	123653550
+chr1	123806472	123807799
+chr1	123484321	123484872
+chr1	123223300	123229067
+chr1	122988286	122988566
+chr1	124334073	124339709
+chr1	228636195	228644351
+chr1	123750069	123757183
+chr1	123366175	123373760
+chr1	123133630	123149853
+chr1	124142769	124151448
+chr1	122750334	122757705
+chr1	124543344	124551494
+chr1	123463500	123464152
+chr1	123337837	123338665
+chr1	228617880	228620677
+chr1	122559146	122563373
+chr1	124449186	124459787
+chr1	123705983	123709138
+chr1	123717922	123720330
+chr1	124553805	124556586
+chr1	124022068	124023445
+chr1	123774014	123776700
+chr1	124112936	124127192
+chr1	123703028	123703309
+chr1	123338733	123341125
+chr1	123534158	123538816
+chr1	122921571	122965108
+chr1	123739630	123746731
+chr1	123473265	123473765
+chr1	123078634	123090349
+chr1	123634201	123638786
+chr1	123267951	123272997
+chr1	236712612	236716056
+chr1	124537250	124541856
+chr1	124058577	124074991
+chr1	123426130	123440706
+chr1	124634253	124634854
+chr1	124493000	124494360
+chr1	123977871	123982318
+chr1	123601299	123632580
+chr1	124233326	124233698
+chr1	124496911	124521316
+chr1	123581424	123587147
+chr1	123152211	123160608
+chr1	124295346	124303919
+chr1	2667718	2674721
+chr1	161442212	161459350
+chr1	124236503	124241894
+chr1	123595138	123599775
+chr1	124416165	124416369
+chr1	122981432	122981579
+chr1	124558348	124558487
+chr1	122918760	122919060
+chr1	124401333	124410007
+chr1	123909020	123916403
+chr1	123567201	123572421
+chr1	123983540	123986717
+chr1	124460404	124460735
+chr1	123090393	123124055
+chr1	122989513	122991506
+chr1	123545968	123562717
+chr1	123725476	123729267
+chr1	124047216	124058353
+chr1	123125721	123129029
+chr1	124748208	124754755
+chr1	123709361	123710441
+chr1	123192365	123205196
+chr1	124157846	124161487
+chr1	123274274	123277786
+chr1	161466446	161472738
+chr1	123232086	123238851
+chr1	123600135	123600404
+chr1	122981905	122984908
+chr1	124410105	124415973
+chr1	123000144	123004503
+chr1	123710782	123716188
+chr1	124042426	124046077
+chr1	124153959	124157292
+chr1	124523859	124524670
+chr1	124391089	124393688
+chr1	123160743	123179378
+chr1	124340068	124346843
+chr1	123078238	123078262
+chr1	123463270	123463288
+chr1	124288111	124292489
+chr1	228620723	228624068
+chr1	122985198	122987949
+chr1	123501642	123505110
+chr1	123494306	123500148
+chr1	123299360	123308922
+chr1	123477134	123478791
+chr1	123918014	123920972
+chr1	123564074	123564609
+chr1	124187392	124191846
+chr1	123860085	123865862
+chr1	124137450	124141973
+chr1	123231456	123232068
+chr1	124668405	124698204
+chr1	123660028	123667802
+chr1	124029009	124035852
+chr1	124314206	124330916
+chr1	628088	635923
+chr1	124698889	124710105
+chr1	123654707	123657707
+chr1	122564484	122564628
+chr1	123327187	123336366
+chr1	124756241	124765560
+chr1	124587185	124593255
+chr1	123993263	124017467
+chr1	124577276	124577641
+chr1	123936407	123941483
+chr1	144102590	144105633
+chr1	123063967	123066571
+chr1	91386236	91388535
+chr1	121965774	121969623
+chr1	123506859	123512351
+chr1	124203810	124232742
+chr1	124177846	124182735
+chr1	224010839	224015910
+chr1	123442350	123448859
+chr1	123336600	123336731
+chr1	123724579	123724815
+chr1	123668135	123668950
+chr1	123411051	123420183
+chr1	124350457	124387136
+chr1	125165251	125171959
+chr1	122617993	122622038
+chr1	123587727	123593407
+chr1	123240864	123243602
+chr1	123452734	123453336
+chr1	123252764	123256027
+chr1	124024808	124027897
+chr1	123318612	123318659
+chr1	122712809	122715970
+chr1	123217618	123218459
+chr1	122716926	122720666
+chr1	124091699	124105529
+chr1	124470643	124487474
+chr1	123766306	123769701
+chr1	124579298	124584106
+chr1	123899406	123904231
+chr1	124018297	124021565
+chr1	123825521	123828486
+chr1	123517950	123531595
+chr1	122793709	122809534
+chr1	123485159	123486942
+chr1	124075556	124076291
+chr1	2691502	2693971
+chr1	123374374	123383121
+chr1	123899167	123899184
+chr1	123073383	123074327
+chr1	122622921	122655193
+chr1	125172600	125185576
+chr1	122772071	122792107
+chr1	123222073	123222104
+chr1	123395736	123410588
+chr1	124521887	124523497
+chr1	122915620	122915759
+chr1	16612489	16614272
+chr1	122720823	122749445
+chr1	122992665	122999602
+chr1	124551762	124552236
+chr1	122916012	122916101
+chr1	2747597	2755052
+chr1	123841803	123858444
+chr1	122810096	122810306
+chr1	124586233	124586899
+chr1	123187673	123191050
+chr1	124258930	124285568
+chr1	123279142	123292202
+chr1	124765617	124785370
+chr1	123129823	123133340
+chr1	228624085	228635970
+chr1_KI270709v1_random	1	19452
+chr1_KI270711v1_random	7349	10549
+chr1_KI270712v1_random	57044	59379
+chr1_KI270713v1_random	19745	23499
+chr10	38917532	38921312
+chr10	38485929	38490812
+chr10	40555218	40558145
+chr10	40184616	40184779
+chr10	40085143	40086546
+chr10	42316454	42321742
+chr10	40394887	40394946
+chr10	40134029	40136698
+chr10	41123812	41126690
+chr10	42302263	42306136
+chr10	40975016	40977643
+chr10	38784990	38787946
+chr10	42307404	42315736
+chr10	126946285	126949389
+chr10	40681674	40683032
+chr10	40412067	40415257
+chr10	40185985	40187776
+chr10	40890943	40893719
+chr10	40395146	40397876
+chr10	41016424	41019108
+chr10	40510552	40510803
+chr10	40815111	40818385
+chr10	40199982	40200234
+chr10	39968185	39968710
+chr10	40667639	40670355
+chr10	38807376	38810540
+chr10	42065293	42106174
+chr10	38799302	38801295
+chr10	40129941	40131107
+chr10	38497910	38501672
+chr10	133685504	133691455
+chr10	40961499	40963218
+chr10	40287965	40290809
+chr10	38572473	38574967
+chr10	42315741	42315752
+chr10	40128252	40129424
+chr10	42165072	42168883
+chr10	38789940	38793846
+chr10	40933603	40935552
+chr10	40366986	40369532
+chr10	38903116	38905607
+chr10	41842047	41917264
+chr10	40509472	40509493
+chr10	42296616	42299414
+chr10	40767435	40770603
+chr10	40539939	40542976
+chr10	133679108	133679154
+chr10	38523266	38530846
+chr10	133761260	133765408
+chr10	40476591	40478349
+chr10	38577833	38582050
+chr10	38494933	38497542
+chr10	133679249	133679353
+chr11	3652764	3655645
+chr11	94236861	94237383
+chr11	10506890	10510998
+chr11	94237393	94239001
+chr11	1016509	1018503
+chr12	9003	11550
+chr12	35613810	35616091
+chr12	37245547	37247397
+chr12	37235710	37241245
+chr12	132239864	132243684
+chr12	37265352	37266527
+chr13	17896880	17897978
+chr13	18013137	18015392
+chr13	17053353	17056060
+chr13	17745515	17746936
+chr13	16244034	16244112
+chr13	17942778	17944168
+chr13	17711883	17712069
+chr13	16599254	16600279
+chr13	17150303	17151628
+chr13	16249181	16254341
+chr13	17643597	17646367
+chr13	16606651	16609402
+chr13	17095168	17096475
+chr13	16414425	16417030
+chr13	16672385	16672426
+chr13	17856076	17857762
+chr13	17721328	17721413
+chr13	17381911	17382356
+chr13	17303579	17306666
+chr13	17939255	17939991
+chr13	17416373	17416917
+chr13	17791894	17792146
+chr13	17182716	17184870
+chr13	16656928	16657044
+chr13	18020584	18020716
+chr13	17935600	17938924
+chr13	17604283	17609260
+chr13	16697589	16697682
+chr13	17923781	17923923
+chr13	17143546	17146577
+chr13	17946624	17951696
+chr13	17117485	17119711
+chr13	16153317	16156028
+chr13	18210701	18213661
+chr13	17877701	17877809
+chr13	17887934	17890703
+chr13	17664615	17669171
+chr13	17347058	17351187
+chr13	16923463	16927889
+chr13	17295139	17297764
+chr13	17750720	17753323
+chr13	17654891	17657917
+chr13	17219173	17219270
+chr13	16698050	16700278
+chr13	17328621	17328826
+chr13	17932523	17933722
+chr13	17531675	17534979
+chr13	17624570	17628053
+chr13	16484559	16486098
+chr13	17127062	17130174
+chr13	17120016	17120463
+chr13	16116481	16116678
+chr13	17884216	17887064
+chr13	17079136	17081535
+chr13	16697688	16698031
+chr13	17988261	17988436
+chr13	16918603	16921651
+chr13	16133786	16137594
+chr13	17239848	17243306
+chr13	17367784	17369863
+chr13	17372849	17378158
+chr13	16113312	16116428
+chr13	17543368	17544311
+chr13	17165760	17168258
+chr13	16116799	16116843
+chr13	17946055	17946089
+chr13	16462827	16463822
+chr13	17978596	17979303
+chr13	16497927	16500817
+chr13	17927090	17930378
+chr13	17536172	17536268
+chr13	17031820	17031985
+chr13	17582870	17585687
+chr13	18029662	18029877
+chr13	17018417	17020181
+chr13	17585846	17585987
+chr13	17020904	17021039
+chr13	17400299	17405427
+chr13	17071688	17074162
+chr13	17845879	17848465
+chr13	16765152	16767662
+chr13	17912704	17915217
+chr13	16235967	16243773
+chr13	17154977	17158374
+chr13	17703323	17705629
+chr13	17826681	17832106
+chr13	16487849	16488103
+chr13	17874543	17877647
+chr13	16930162	16931331
+chr13	16687382	16691490
+chr13	17706732	17709513
+chr13	17877832	17878000
+chr13	18000459	18005465
+chr13	17952346	17954794
+chr13	16597142	16599029
+chr13	17538263	17541448
+chr13	16255195	16257054
+chr13	17318152	17320974
+chr13	17148028	17148998
+chr13	17206641	17209469
+chr13	17007241	17007246
+chr13	17309664	17311163
+chr13	17032633	17034654
+chr13	17642351	17643155
+chr13	17679715	17684928
+chr13	17878036	17880528
+chr13	17718673	17721311
+chr13	17026785	17030773
+chr13	18030080	18032798
+chr13	17410217	17411716
+chr13	17113803	17116579
+chr13	17999420	18000378
+chr13	109423125	109425342
+chr13	17792424	17795278
+chr13	17564083	17565098
+chr13	17216765	17218395
+chr13	16392184	16394696
+chr13	17738851	17745243
+chr13	17417100	17417333
+chr13	17798860	17802270
+chr13	16437130	16439835
+chr13	17628400	17631725
+chr13	17671567	17672338
+chr13	16159974	16162705
+chr13	17915249	17915268
+chr13	16244242	16246123
+chr13	17354483	17356857
+chr13	17923002	17923725
+chr13	17988560	17991066
+chr13	17922091	17922212
+chr13	18009819	18013052
+chr13	16146408	16149034
+chr13	17485116	17487318
+chr13	18005756	18008782
+chr13	17070384	17071097
+chr13	17791405	17791779
+chr13	18021232	18022958
+chr13	16600613	16601047
+chr13	17094313	17094390
+chr13	17854761	17855955
+chr13	16882765	16884187
+chr13	16656324	16656785
+chr13	17004782	17007171
+chr13	17841209	17842722
+chr13	17916147	17917119
+chr13	16848379	16848894
+chr13	17391380	17393955
+chr13	16942345	16944804
+chr13	17839923	17841144
+chr13	16923061	16923291
+chr13	16856329	16856452
+chr13	17323756	17325638
+chr13	16229236	16235037
+chr13	17177841	17180742
+chr13	17788889	17790682
+chr13	17993993	17998725
+chr13	16246475	16246855
+chr13	17817804	17822642
+chr13	16826275	16827838
+chr13	17417958	17419021
+chr13	17031088	17031801
+chr13	17955477	17956002
+chr13	17697792	17700499
+chr13	18025886	18028639
+chr13	17756295	17759896
+chr13	17860073	17865089
+chr13	17263467	17266339
+chr13	17515140	17519684
+chr13	16851515	16851797
+chr13	17979450	17981547
+chr13	17230401	17233567
+chr13	17243411	17245204
+chr13	17778067	17780938
+chr13	17172503	17175298
+chr13	17993819	17993835
+chr14	16091961	16105537
+chr14	105230006	105232915
+chr14_GL000225v1_random	105690	136390
+chr14_GL000225v1_random	89351	104131
+chr14_GL000225v1_random	136395	140413
+chr14_GL000225v1_random	1666	8760
+chr14_GL000225v1_random	37408	38072
+chr14_GL000225v1_random	39176	89339
+chr14_GL000225v1_random	30656	36652
+chr14_GL000225v1_random	9530	30503
+chr14_GL000225v1_random	195384	199785
+chr14_KI270723v1_random	33989	38115
+chr14_KI270724v1_random	1	2096
+chr15	19774748	19781046
+chr15	17079519	17084551
+chr15	19781269	19782029
+chr16	38264960	38268929
+chr16	33335395	33340544
+chr16	90115865	90118991
+chr16	34609198	34611771
+chr16	38274918	38281137
+chr16	46379683	46402990
+chr16	34570511	34577757
+chr16	34095258	34100789
+chr16	34579966	34597675
+chr16	34697614	34698226
+chr16	34061433	34067253
+chr17	23015137	23017694
+chr17	26567361	26568148
+chr17	26935184	26941957
+chr17	25388774	25391334
+chr17	43234260	43235297
+chr17	22520192	22522698
+chr17	26824538	26827116
+chr17	25787486	25789678
+chr17	25351848	25354673
+chr17	26827179	26830212
+chr17	24149445	24152769
+chr17	26624404	26626919
+chr17	25568022	25570460
+chr17	115876	119087
+chr17	26602416	26605714
+chr17	23581842	23584984
+chr17	26784244	26785873
+chr17	43281692	43285869
+chr17	43232334	43233864
+chr17	25571866	25574916
+chr17	43276929	43279827
+chr17	26872121	26872359
+chr17	21851874	21854502
+chr17	26593506	26597692
+chr17	26139235	26142549
+chr17	23067523	23070190
+chr17	25382608	25385005
+chr17	26547832	26550522
+chr17	43250513	43253389
+chr17	1062389	1066145
+chr17	24186508	24189789
+chr17	43287867	43290714
+chr17	25073233	25075710
+chr17	26878005	26886980
+chr17	313684	316768
+chr17	43245212	43247867
+chr17	22976412	22977953
+chr17	43264248	43267017
+chr17	21856405	21856412
+chr17	23189141	23191663
+chr17	26618168	26621523
+chr17	25919036	25921580
+chr17	21967190	21993012
+chr17	26854870	26856944
+chr17	121351	125557
+chr17_GL000205v2_random	86989	90907
+chr17_GL000205v2_random	26	3428
+chr17_GL000205v2_random	7379	7759
+chr17_GL000205v2_random	3848	7071
+chr17_KI270729v1_random	160013	162123
+chr17_KI270729v1_random	19213	29747
+chr17_KI270729v1_random	45511	48698
+chr17_KI270729v1_random	1	7213
+chr17_KI270729v1_random	9482	14680
+chr17_KI270729v1_random	55466	60276
+chr17_KI270730v1_random	101867	111086
+chr17_KI270730v1_random	95356	100621
+chr17_KI270730v1_random	80509	93823
+chr18	9028	11550
+chr18	20560617	20563418
+chr18	105276	113531
+chr18	79618344	79620846
+chr19	54188605	54191272
+chr19	36279514	36282602
+chr19	37291909	37295660
+chr19	7449308	7452123
+chr19	37290463	37291465
+chr19	36300186	36303419
+chr19	24890430	24896738
+chr2	89822969	89823237
+chr2	89818404	89821968
+chr2	89814061	89814505
+chr2	89810575	89813442
+chr2	89814629	89817620
+chr2	91420365	91423530
+chr2	89805597	89807370
+chr2	90379564	90403503
+chr2	89823396	89842268
+chr20	31232160	31233573
+chr20	31176519	31179840
+chr20	28818144	28818512
+chr20	28511375	28514724
+chr20	28784667	28786930
+chr20	31181856	31189491
+chr20	28516883	28518637
+chr20	28815563	28816341
+chr20	31228459	31231680
+chr20	27180808	27182094
+chr20	28839720	28842865
+chr20	26540721	26543455
+chr20	29884447	29885678
+chr20	31050520	31077638
+chr20	28888219	28891252
+chr20	26489265	26489874
+chr20	31224415	31227417
+chr20	28819957	28823272
+chr20	26601374	26608712
+chr20	28805290	28808241
+chr20	31239887	31243476
+chr20	31166568	31167807
+chr20	29261354	29264856
+chr20	28307014	28309467
+chr20	28781706	28784563
+chr20	31170535	31172967
+chr20	31168211	31169703
+chr20	28896358	28899883
+chr20	31090368	31091746
+chr20	31173003	31173426
+chr20	31156073	31160110
+chr20	59234	67210
+chr20	28493663	28499706
+chr20	29121594	29123538
+chr20	31190204	31190333
+chr20	28548723	28550182
+chr20	28787339	28787377
+chr21	10653993	10663675
+chr21	10699029	10699402
+chr21	10428560	10428597
+chr21	7256313	7262762
+chr21	10687705	10698999
+chr21	10683389	10686769
+chr21	10700414	10710804
+chr21	10268901	10273604
+chr21	9245189	9250252
+chr21	10752005	10756855
+chr21	10719044	10720169
+chr21	10796208	10798236
+chr21	10729126	10738634
+chr21	10391655	10393390
+chr21	10798373	10799432
+chr21	8808979	8812258
+chr21	7932046	7935094
+chr21	10361620	10363358
+chr21	7935422	7940005
+chr21	7914978	7919785
+chr21	8201552	8261964
+chr21	10710911	10718875
+chr21	10720474	10728504
+chr21	10804494	10807620
+chr21	5326890	5330910
+chr21	6368536	6373565
+chr21	7940721	7945695
+chr21	10665364	10681351
+chr21	7922196	7931111
+chr21	10807667	10808020
+chr21	10800154	10800890
+chr21	7946160	7958748
+chr21	8985911	8989787
+chr21	10324539	10327338
+chr21	10686799	10686855
+chr21	10426777	10428455
+chr21	8384656	8473309
+chr22	11210160	11215577
+chr22	18729480	18731694
+chr22	12174634	12177777
+chr22	12690973	12694171
+chr22	18895123	18897647
+chr22	50806876	50809467
+chr22	11022253	11024389
+chr22	16345779	16354945
+chr22	11367998	11371880
+chr22	10716070	10731276
+chr22	16356082	16361451
+chr22	11812787	11816849
+chr22_KI270733v1_random	117288	179772
+chr22_KI270734v1_random	120388	122914
+chr22_KI270735v1_random	38514	42811
+chr22_KI270736v1_random	86945	87728
+chr22_KI270736v1_random	47146	51395
+chr22_KI270736v1_random	63231	66185
+chr22_KI270736v1_random	81973	86084
+chr22_KI270736v1_random	136134	140350
+chr22_KI270736v1_random	131362	135297
+chr22_KI270736v1_random	76967	77087
+chr22_KI270736v1_random	161047	164535
+chr22_KI270736v1_random	165492	168910
+chr22_KI270736v1_random	51786	54840
+chr22_KI270736v1_random	153598	154722
+chr22_KI270736v1_random	144303	153354
+chr22_KI270736v1_random	95664	105091
+chr22_KI270736v1_random	109434	110514
+chr22_KI270736v1_random	128647	129777
+chr22_KI270736v1_random	111003	115086
+chr22_KI270736v1_random	169771	176702
+chr22_KI270736v1_random	178428	181920
+chr22_KI270736v1_random	88590	92411
+chr22_KI270736v1_random	129980	130603
+chr22_KI270736v1_random	230	3329
+chr22_KI270736v1_random	154901	159132
+chr22_KI270736v1_random	60991	62109
+chr22_KI270736v1_random	58693	60667
+chr22_KI270736v1_random	115254	122892
+chr22_KI270736v1_random	77202	81530
+chr22_KI270736v1_random	72297	75263
+chr22_KI270736v1_random	123794	128009
+chr22_KI270737v1_random	79010	80504
+chr22_KI270737v1_random	30421	40521
+chr22_KI270737v1_random	23114	29485
+chr3	93469362	93471801
+chr3	93711664	93712437
+chr3	91548591	91554130
+chr3	197389421	197389902
+chr3	198172030	198174477
+chr3	198167382	198170281
+chr3	9002	11842
+chr3	93706888	93710048
+chr3	75667816	75670647
+chr3	96616287	96619133
+chr4	49322045	49325033
+chr4	49630300	49659095
+chr4	49708071	49712961
+chr4	190175302	190182802
+chr4	190082751	190083066
+chr4	190020660	190023773
+chr4	1433989	1436603
+chr4	190121457	190124076
+chr4	49090233	49157664
+chr4	51106159	51108566
+chr4	49510010	49516194
+chr4_GL000008v2_random	1	8337
+chr5	9009	12786
+chr5	49620931	49628481
+chr5	80649491	80652837
+chr5	50139509	50139815
+chr5	17591996	17597406
+chr5	17524212	17529170
+chr5	34188278	34193784
+chr5	134924083	134928692
+chr5	17597460	17599261
+chr5	49598396	49604131
+chr5	17584091	17585523
+chr5	49629731	49634740
+chr5	34186729	34187148
+chr5	47295868	47300778
+chr5	2144865	2147341
+chr5	49665174	49668431
+chr5	50141319	50141921
+chr5	49608847	49619600
+chr5	49640990	49647802
+chr5	17517750	17523690
+chr5	49655272	49662871
+chr5	47306576	47310036
+chr5_GL000208v1_random	90558	92621
+chr6	157309365	157315191
+chr6	59718138	59718529
+chr6	170397348	170400442
+chr6	862141	864174
+chr6	59640507	59641284
+chr6	58783432	58784719
+chr6	58996337	58998871
+chr6	58793187	58793265
+chr6	58784734	58786253
+chr6	58792241	58793118
+chr6	60231805	60232035
+chr6	370247	373135
+chr7	57495340	57497718
+chr7	60309518	60312051
+chr7	58034763	58037384
+chr7	100956534	100959960
+chr7	158914463	158916767
+chr7	58032104	58034587
+chr7	57493144	57494128
+chr7	61055086	61056354
+chr7	62349293	62351966
+chr7	57486422	57491361
+chr7	158145977	158150149
+chr7	56369384	56375717
+chr7	65488410	65491158
+chr7	59292148	59293599
+chr7	58796711	58798922
+chr8	85783148	85787786
+chr8	85763464	85765991
+chr8	85794512	85818706
+chr8	85725563	85725893
+chr8	43236617	43243359
+chr8	85646151	85663321
+chr8	85731042	85746666
+chr8	85768408	85778392
+chr8	85820021	85822957
+chr8	85714761	85722035
+chr8	85825873	85828618
+chr8	85755743	85762636
+chr8	85788653	85793679
+chr8	85793779	85794442
+chr9	60631611	60632719
+chr9	43944548	43947643
+chr9	60610639	60611482
+chr9	137326772	137329485
+chr9	41229428	41231548
+chr9	40911805	40913197
+chr9	43317735	43320170
+chr9	61855439	61858036
+chr9	138230383	138234257
+chrM	1	16569
+chrUn_GL000195v1	31055	32367
+chrUn_GL000214v1	63140	66720
+chrUn_GL000214v1	116380	137718
+chrUn_GL000216v2	52643	53625
+chrUn_GL000216v2	59665	59760
+chrUn_GL000216v2	47923	48574
+chrUn_GL000216v2	75829	81867
+chrUn_GL000216v2	39980	43542
+chrUn_GL000216v2	68368	74161
+chrUn_GL000216v2	1	31022
+chrUn_GL000216v2	44910	47898
+chrUn_GL000216v2	60966	60982
+chrUn_GL000216v2	137856	143789
+chrUn_GL000216v2	61141	67547
+chrUn_GL000216v2	144039	144681
+chrUn_GL000216v2	82320	86892
+chrUn_GL000216v2	50490	50550
+chrUn_GL000216v2	144999	173107
+chrUn_GL000216v2	33316	39801
+chrUn_GL000220v1	100564	161802
+chrUn_GL000224v1	1	20377
+chrUn_GL000226v1	1	15008
+chrUn_KI270303v1	1	1942
+chrUn_KI270304v1	1	2165
+chrUn_KI270310v1	1	1201
+chrUn_KI270311v1	1	2240
+chrUn_KI270317v1	135	2580
+chrUn_KI270317v1	35352	37690
+chrUn_KI270330v1	1	1652
+chrUn_KI270333v1	1	2699
+chrUn_KI270336v1	1	1026
+chrUn_KI270337v1	1	1121
+chrUn_KI270411v1	1	2646
+chrUn_KI270435v1	90752	92983
+chrUn_KI270435v1	94	3221
+chrUn_KI270438v1	45534	48569
+chrUn_KI270438v1	68235	72651
+chrUn_KI270438v1	78544	79227
+chrUn_KI270438v1	66554	68124
+chrUn_KI270438v1	99571	112505
+chrUn_KI270442v1	39052	44270
+chrUn_KI270442v1	32884	34371
+chrUn_KI270442v1	1	1666
+chrUn_KI270442v1	67250	72057
+chrUn_KI270442v1	45626	46874
+chrUn_KI270442v1	12306	15717
+chrUn_KI270442v1	31259	32442
+chrUn_KI270442v1	99605	100217
+chrUn_KI270442v1	73967	78664
+chrUn_KI270442v1	22807	26003
+chrUn_KI270442v1	78839	98090
+chrUn_KI270465v1	1	1774
+chrUn_KI270466v1	1	1233
+chrUn_KI270467v1	1	3920
+chrUn_KI270512v1	20303	22689
+chrUn_KI270519v1	135213	138126
+chrUn_KI270519v1	82280	82552
+chrUn_KI270519v1	134919	134971
+chrUn_KI270519v1	87087	87726
+chrUn_KI270519v1	83709	84963
+chrUn_KI270519v1	85036	85246
+chrUn_KI270538v1	52315	55319
+chrUn_KI270538v1	82664	85364
+chrUn_KI270538v1	87289	90766
+chrUn_KI270538v1	79641	82654
+chrUn_KI270544v1	1	1202
+chrUn_KI270589v1	40521	44474
+chrUn_KI270590v1	1791	4364
+chrUn_KI270591v1	3788	5796
+chrUn_KI270743v1	150742	153388
+chrUn_KI270743v1	155199	157860
+chrUn_KI270744v1	104492	126444
+chrUn_KI270744v1	10020	15078
+chrUn_KI270751v1	148528	150742
+chrUn_KI270751v1	37373	41073
+chrUn_KI270754v1	37970	40191
+chrUn_KI270756v1	13229	17851
+chrUn_KI270756v1	63263	65792
+chrUn_KI270756v1	23904	23957
+chrUn_KI270756v1	60584	60646
+chrUn_KI270756v1	61107	61240
+chrUn_KI270756v1	24602	28567
+chrUn_KI270756v1	1	8666
+chrUn_KI270756v1	17930	19177
+chrUn_KI270756v1	45923	49371
+chrUn_KI270756v1	53222	53315
+chrUn_KI270756v1	29479	30611
+chrUn_KI270756v1	74181	75098
+chrUn_KI270756v1	20853	23813
+chrUn_KI270756v1	41049	44746
+chrUn_KI270756v1	20484	20705
+chrUn_KI270756v1	57080	60437
+chrUn_KI270756v1	12442	13205
+chrUn_KI270757v1	59339	62855
+chrUn_KI270757v1	69004	69630
+chrUn_KI270757v1	58790	58869
+chrUn_KI270757v1	64050	68303
+chrUn_KI270757v1	68531	68702
+chrUn_KI270757v1	58678	58783
+chrUn_KI270757v1	13326	17787
+chrX	115731592	115734123
+chrX	115727364	115729136
+chrX	267916	270529
+chrX	156029043	156031753
+chrX	270737	271685
+chrY	10886323	10890931
+chrY	11316283	11316300
+chrY	10858033	10859502
+chrY	11308226	11316021
+chrY	11012810	11016490
+chrY	10878587	10881982
+chrY	10931592	10932136
+chrY	10753641	10757873
+chrY	10956930	10957024
+chrY	10661754	10661806
+chrY	10758153	10766392
+chrY	10746721	10753487
+chrY	10920106	10922590
+chrY	10774388	10778018
+chrY	10778911	10782860
+chrY	10894385	10895918
+chrY	10954990	10956549
+chrY	10840925	10841313
+chrY	11686805	11691549
+chrY	10820442	10823253
+chrY	10981359	10990942
+chrY	10681540	10688008
+chrY	11720926	11724374
+chrY	10969891	10973436
+chrY	10646251	10650980
+chrY	56824781	56852466
+chrY	11003946	11005824
+chrY	10794838	10810653
+chrY	10898026	10900773
+chrY	10883316	10886262
+chrY	10784961	10787467
+chrY	10794605	10794735
+chrY	10766649	10766865
+chrY	26638739	26641562
+chrY	10948249	10952190
+chrY	10841985	10843556
+chrY	10911064	10913946
+chrY	11030435	11031351
+chrY	10957101	10960925
+chrY	10628917	10632667
+chrY	10998021	11001808
+chrY	10890947	10891357
+chrY	10767048	10774082
+chrY	11289677	11307587
+chrY	10923983	10929299
+chrY	11021350	11022613
+chrY	10991016	10991138
+chrY	10665517	10668057
+chrY	11745782	11749552
+chrY	10824136	10826667
+chrY	11316916	11335434
+chrY	10891370	10894050
+chrY	11002737	11003086
+chrY	10866943	10870405
+chrY	10943432	10946724
+chrY	11023543	11023560
+chrY	10932277	10941762
+chrY	10992538	10994331
+chrY	10655846	10661087
+chrY	10766897	10766903
+chrY	10788274	10794462
diff --git a/resources/blacklistbed/mm10.bed b/resources/blacklistbed/mm10.bed
index 449a0a4..66dc024 100644
--- a/resources/blacklistbed/mm10.bed
+++ b/resources/blacklistbed/mm10.bed
@@ -1,560 +1,559 @@
-Chr	Start	End	Detailed Annotation	Nearest TSS	Mappability	Overlap with ENCODE
-chr4	147638286	147647439	promoter-TSS (NM_145078)	Zfp979	Mappable	Unique
-chr16	3338542	3338708	RLTR11A|LTR|ERVK	Olfr161	Mappable	Unique
-chr1	181741994	181745061	Intergenic	Lbr	Mappable	ENCODE Overlap
-chr1	43776659	43779916	"intron (NM_001368287, intron 7 of 14)"	Ecrg4	Mappable	ENCODE Overlap
-chr1	85452903	85466403	Lx5|LINE|L1	Sp110	Mappable	ENCODE Overlap
-chr1	84989001	84996294	Intergenic	Slc16a14	Mappable	ENCODE Overlap
-chr1	88210785	88225860	"exon (NM_013701, exon 5 of 5)"	Ugt1a1	Mappable	ENCODE Overlap
-chr1	133593455	133597064	Intergenic	Snrpe	Mappable	ENCODE Overlap
-chr1	85527647	85528664	Intergenic	Sp110	Mappable	ENCODE Overlap
-chr1	84961182	84967761	Intergenic	Slc16a14	Mappable	ENCODE Overlap
-chr1	195370720	195372965	(TTAGGG)n|Simple_repeat|Simple_repeat	Cr2	Mappable	ENCODE Overlap
-chr1	85065013	85065017	L1Md_A|LINE|L1	A530032D15Rik	Mappable	ENCODE Overlap
-chr1	85230698	85268061	"intron (NM_001037909, intron 5 of 6)"	C130026I21Rik	Mappable	ENCODE Overlap
-chr1	88296835	88310839	Intergenic	Trpm8	Mappable	ENCODE Overlap
-chr1	85041960	85048233	(TTCC)n|Simple_repeat|Simple_repeat	A530032D15Rik	Mappable	ENCODE Overlap
-chr1	191396111	191398516	promoter-TSS (NM_144880)	Ppp2r5a	Lowly	ENCODE Overlap
-chr1	63629211	63631806	"intron (NM_001081658, intron 14 of 14)"	Gm39653	Mappable	ENCODE Overlap
-chr1	85159040	85172333	Intergenic	Gm7609	Mappable	ENCODE Overlap
-chr1	85570638	85570772	Intergenic	Sp110	Mappable	ENCODE Overlap
-chr1	85268122	85335650	L1Md_F|LINE|L1	C130026I21Rik	Mappable	ENCODE Overlap
-chr1	171068450	171072576	CpG	Mir6546	Mappable	ENCODE Overlap
-chr1	85477779	85508363	Intergenic	Sp110	Mappable	ENCODE Overlap
-chr1	88270612	88293020	B1_Mus2|SINE|Alu	Hjurp	Lowly	ENCODE Overlap
-chr1	85154287	85155709	B2_Mm2|SINE|B2	Gm7609	Mappable	ENCODE Overlap
-chr1	85212954	85213093	"exon (NM_001081746, exon 4 of 4)"	Gm7609	Mappable	ENCODE Overlap
-chr1	85027461	85031109	Intergenic	A530032D15Rik	Mappable	ENCODE Overlap
-chr1	85578857	85636049	Lx10|LINE|L1	Sp110	Mappable	ENCODE Overlap
-chr1	88226083	88262450	"intron (NM_001281466, intron 22 of 41)"	Mroh2a	Mappable	ENCODE Overlap
-chr1	171073261	171076658	Intergenic	Mir6546	Mappable	ENCODE Overlap
-chr1	84984333	84986162	L1Md_F2|LINE|L1	Slc16a14	Mappable	ENCODE Overlap
-chr1	88263593	88269113	"exon (NM_172505, exon 5 of 5)"	6430706D22Rik	Mappable	ENCODE Overlap
-chr1	85196271	85200746	Intergenic	Gm7609	Mappable	ENCODE Overlap
-chr1	85570878	85573531	ORR1E-int|LTR|ERVL-MaLR	Sp110	Mappable	ENCODE Overlap
-chr1	7396936	7398946	CpG	Pcmtd1	Mappable	ENCODE Overlap
-chr1	86524974	86527723	promoter-TSS (NM_001360830)	Ptma	Mappable	ENCODE Overlap
-chr1	85215765	85216434	Intergenic	Gm7609	Mappable	ENCODE Overlap
-chr1	88293232	88293622	B1_Mur4|SINE|Alu	Trpm8	Mappable	ENCODE Overlap
-chr1	26685234	26689325	"exon (NM_001033764, exon 1 of 2)"	4931408C20Rik	Mappable	Unique
-chr1	183298135	183300594	RLTR33|LTR|ERVK	Brox	Mappable	ENCODE Overlap
-chr1	88294911	88296733	Intergenic	Trpm8	Mappable	ENCODE Overlap
-chr1	24610534	24617184	Intergenic	Col19a1	Mappable	ENCODE Overlap
-chr1	16072734	16074144	"intron (NM_001243238, intron 3 of 4)"	4930444P10Rik	Mappable	ENCODE Overlap
-chr1	171080207	171081317	CpG	Mir6546	Mappable	ENCODE Overlap
-chr1	171067673	171068300	Intergenic	Mir6546	Mappable	ENCODE Overlap
-chr1	171063539	171065867	promoter-TSS (NR_106103)	Mir6546	Mappable	ENCODE Overlap
-chr1	100179097	100181396	L1Md_F2|LINE|L1	Cntnap5b	Mappable	ENCODE Overlap
-chr1	85523638	85527190	Intergenic	Sp110	Mappable	Unique
-chr1	85549826	85555898	RSINE1|SINE|B4	Sp110	Mappable	ENCODE Overlap
-chr1	85003103	85013260	Intergenic	Slc16a14	Mappable	ENCODE Overlap
-chr1	85646518	85649958	Intergenic	Sp100	Mappable	ENCODE Overlap
-chr1	95450930	95453225	(TAAA)n|Simple_repeat|Simple_repeat	Fam174a	Mappable	ENCODE Overlap
-chr1	78572727	78575645	Intergenic	Mogat1	Mappable	ENCODE Overlap
-chr1	85123828	85124899	ORR1E-int|LTR|ERVL-MaLR	A530032D15Rik	Lowly	ENCODE Overlap
-chr1	190299616	190304517	Intergenic	Gm29678	Mappable	ENCODE Overlap
-chr1	85037170	85041259	Intergenic	A530032D15Rik	Mappable	ENCODE Overlap
-chr1	84960769	84961175	Intergenic	Slc16a14	Mappable	ENCODE Overlap
-chr1	85178595	85185186	L1MB5|LINE|L1	Gm7609	Mappable	Unique
-chr1	85073737	85116916	B3|SINE|B2	A530032D15Rik	Mappable	ENCODE Overlap
-chr1	195240544	195243014	CpG	Cr2	Mappable	ENCODE Overlap
-chr1	85565428	85567696	Lx5|LINE|L1	Sp110	Mappable	ENCODE Overlap
-chr1	85337842	85347901	Intergenic	C130026I21Rik	Mappable	ENCODE Overlap
-chr10	81177053	81179869	promoter-TSS (NR_028549)	Snord37	Mappable	ENCODE Overlap
-chr10	22469495	22472214	PB1D7|SINE|Alu	Gm10825	Mappable	Unique
-chr10	130593319	130595993	(TTAGGG)n|Simple_repeat|Simple_repeat	Vmn2r87	Mappable	Unique
-chr10	58220313	58235253	Intergenic	Dux	Mappable	ENCODE Overlap
-chr10	58236676	58240755	Intergenic	Gm4981	Mappable	ENCODE Overlap
-chr10	80621024	80623632	promoter-TSS (NM_134002)	Csnk1g2	Mappable	Unique
-chr10	3108427	3118165	Intergenic	9230019H11Rik	Mappable	ENCODE Overlap
-chr10	27818052	27823177	L1Md_A|LINE|L1	Lama2	Mappable	Unique
-chr10	81319569	81322199	promoter-TSS (NM_027381)	Cactin	Mappable	ENCODE Overlap
-chr10	27823584	27824808	L1Md_A|LINE|L1	Lama2	Mappable	ENCODE Overlap
-chr10	22140821	22144273	"intron (NM_001254744, intron 1 of 1)"	E030030I06Rik	Mappable	ENCODE Overlap
-chr11	34680652	34684369	RLTR44-int|LTR|ERVK	Dock2	Mappable	ENCODE Overlap
-chr11	3118245	3201063	MTD|LTR|ERVL-MaLR	Sfi1	Mappable	ENCODE Overlap
-chr11	109010646	109013122	LSU-rRNA_Hsa|rRNA|rRNA	Axin2	Mappable	ENCODE Overlap
-chr11	107197587	107200468	SYNREP_MM|Satellite|Satellite	Nol11	Mappable	ENCODE Overlap
-chr11	54139006	54141736	(GGA)n|Simple_repeat|Simple_repeat	P4ha2	Mappable	ENCODE Overlap
-chr11	106946994	106948324	B3|SINE|B2	Smurf2	Mappable	ENCODE Overlap
-chr11	34542542	34546090	RLTR44-int|LTR|ERVK	Insyn2b	Mappable	Unique
-chr11	3111164	3116055	Intergenic	Pisd-ps1	Lowly	ENCODE Overlap
-chr11	3099001	3105930	GSAT_MM|Satellite|Satellite	Pisd-ps1	Mappable	ENCODE Overlap
-chr11	96976407	96979082	promoter-TSS (NM_030220)	Sp2	Mappable	ENCODE Overlap
-chr11	88967559	88970540	RMER16-int|LTR|ERVK	Elobl	Mappable	ENCODE Overlap
-chr11	5167853	5170298	Intergenic	Emid1	Mappable	ENCODE Overlap
-chr12	78349869	78352172	LSU-rRNA_Hsa|rRNA|rRNA	Gphn	Mappable	ENCODE Overlap
-chr12	69158390	69160592	promoter-TSS (NM_009093)	Rps29	Mappable	ENCODE Overlap
-chr12	120027628	120030022	(TTAGGG)n|Simple_repeat|Simple_repeat	Tmem196	Mappable	ENCODE Overlap
-chr12	5057005	5057046	Intergenic	Atad2b	Mappable	ENCODE Overlap
-chr12	20225728	20228048	MMERGLN-int|LTR|ERV1	1700030C10Rik	Mappable	ENCODE Overlap
-chr12	112776555	112784927	Intergenic	Pld4	Lowly	ENCODE Overlap
-chr12	4218421	4222747	"intron (NM_001361641, intron 2 of 5)"	Cenpo	Mappable	ENCODE Overlap
-chr12	5057140	5060225	Intergenic	Atad2b	Mappable	Unique
-chr12	97060428	97062789	Intergenic	1700019M22Rik	Mappable	Unique
-chr12	3108865	3111202	GSAT_MM|Satellite|Satellite	Rab10os	Mappable	ENCODE Overlap
-chr12	113423488	113426173	(CAGCT)n|Simple_repeat|Simple_repeat	Adam6b	Mappable	ENCODE Overlap
-chr12	67058082	67060960	GSAT_MM|Satellite|Satellite	Mdga2	Mappable	ENCODE Overlap
-chr12	93575971	93578239	(TTAGGG)n|Simple_repeat|Simple_repeat	4930559C10Rik	Mappable	ENCODE Overlap
-chr12	59035707	59037804	B2_Mm2|SINE|B2	Gemin2	Mappable	ENCODE Overlap
-chr12	20228876	20235430	MMERGLN-int|LTR|ERV1	1700030C10Rik	Mappable	ENCODE Overlap
-chr12	74802840	74805506	GSAT_MM|Satellite|Satellite	Kcnh5	Mappable	ENCODE Overlap
-chr12	69360184	69362481	7SLRNA|srpRNA|srpRNA	Nemf	Mappable	ENCODE Overlap
-chr12	20228316	20228624	MMERGLN-int|LTR|ERV1	1700030C10Rik	Mappable	Unique
-chr13	74527428	74532026	(CACAG)n|Simple_repeat|Simple_repeat	Zfp825	Mappable	ENCODE Overlap
-chr13	58346715	58349853	"intron (NM_175214, intron 1 of 16)"	Kif27	Mappable	ENCODE Overlap
-chr13	110742967	110745548	(CCCTAA)n|Simple_repeat|Simple_repeat	Gm38397	Mappable	ENCODE Overlap
-chr13	119488974	119491395	"intron (NM_001370627, intron 1 of 2)"	Tmem267	Mappable	ENCODE Overlap
-chr13	120320412	120322639	(TTAGGG)n|Simple_repeat|Simple_repeat	Tcstv3	Mappable	ENCODE Overlap
-chr13	9010688	9013168	(GGA)n|Simple_repeat|Simple_repeat	Gtpbp4	Mappable	Unique
-chr13	3371585	3375531	Intergenic	2810429I04Rik	Mappable	Unique
-chr13	119594610	119604524	"intron (NM_001370626, intron 2 of 2)"	Ccl28	Mappable	ENCODE Overlap
-chr13	60095990	60098591	(CACAG)n|Simple_repeat|Simple_repeat	A530065N20Rik	Mappable	ENCODE Overlap
-chr13	119605201	119605920	"intron (NM_001370626, intron 2 of 2)"	Ccl28	Mappable	ENCODE Overlap
-chr13	13859610	13862009	(TTAGGG)n|Simple_repeat|Simple_repeat	Gng4	Mappable	ENCODE Overlap
-chr13	77437837	77440058	GSAT_MM|Satellite|Satellite	Fam172a	Mappable	ENCODE Overlap
-chr13	119607969	119617588	L1Md_F2|LINE|L1	Ccl28	Mappable	ENCODE Overlap
-chr13	44868572	44871024	LSU-rRNA_Hsa|rRNA|rRNA	Dtnbp1	Mappable	ENCODE Overlap
-chr13	12829672	12831385	IAPLTR3-int|LTR|ERVK	Prl2c3	Mappable	ENCODE Overlap
-chr13	9833306	9835494	L1Md_T|LINE|L1	Zmynd11	Mappable	ENCODE Overlap
-chr13	13753022	13756110	"intron (NM_010748, intron 46 of 52)"	Gng4	Mappable	ENCODE Overlap
-chr14	120476521	120479308	promoter-TSS (NM_029519)	Rap2a	Mappable	ENCODE Overlap
-chr14	6636208	6638572	Intergenic	Gm3636	Mappable	ENCODE Overlap
-chr14	7869742	7872517	"intron (NM_001081427, intron 3 of 45)"	Flnb	Mappable	Unique
-chr14	19414676	19420702	GSAT_MM|Satellite|Satellite	Gm5458	Mappable	Unique
-chr14	67714647	67717104	promoter-TSS (NM_175384)	Cdca2	Mappable	Unique
-chr14	69161004	69163446	(CCCTAA)n|Simple_repeat|Simple_repeat	Nkx2-6	Mappable	ENCODE Overlap
-chr14	21499408	21502069	CpG	Kat6b	Mappable	Unique
-chr14	124800549	124803244	(TTAGGG)n|Simple_repeat|Simple_repeat	Fgf14	Mappable	ENCODE Overlap
-chr14	8285634	8287903	Intergenic	Fam107a	Mappable	ENCODE Overlap
-chr14	55559045	55561737	promoter-TSS (NM_001199009)	Dcaf11	Mappable	ENCODE Overlap
-chr15	75084455	75088047	B1_Mm|SINE|Alu	Ly6c2	Mappable	ENCODE Overlap
-chr15	9014687	9017345	(CACG)n|Simple_repeat|Simple_repeat	Ranbp3l	Mappable	ENCODE Overlap
-chr15	91905616	91911402	(CCA)n|Simple_repeat|Simple_repeat	Smgc	Mappable	ENCODE Overlap
-chr15	102404624	102407389	promoter-TSS (NM_013672)	Sp1	Mappable	Unique
-chr15	58437815	58440686	"intron (NM_145959, intron 15 of 23)"	Fam91a1	Mappable	Unique
-chr15	91992118	91993703	L1Md_A|LINE|L1	Cntn1	Mappable	ENCODE Overlap
-chr15	76102012	76105870	"exon (NM_144848, exon 2 of 2)"	Nrbp2	Mappable	ENCODE Overlap
-chr16	86819786	86822244	Intergenic	Gm32461	Mappable	ENCODE Overlap
-chr16	3348513	3353138	Intergenic	Olfr161	Mappable	ENCODE Overlap
-chr16	3112455	3118056	(TTTC)n|Simple_repeat|Simple_repeat	Olfr161	Mappable	ENCODE Overlap
-chr16	11142906	11145315	LSU-rRNA_Hsa|rRNA|rRNA	Txndc11	Lowly	ENCODE Overlap
-chr16	3337067	3337248	MMERGLN_LTR|LTR|ERV1	Olfr161	Mappable	ENCODE Overlap
-chr16	24582361	24584934	(TTAGGG)n|Simple_repeat|Simple_repeat	Morf4l1-ps1	Mappable	ENCODE Overlap
-chr16	3270724	3273299	Lx6|LINE|L1	Olfr161	Mappable	ENCODE Overlap
-chr16	3121810	3124730	B1_Mus1|SINE|Alu	Olfr161	Mappable	ENCODE Overlap
-chr16	93991773	93994368	"intron (NM_019500, intron 1 of 2)"	Cldn14	Mappable	ENCODE Overlap
-chr16	10974067	10976278	GSAT_MM|Satellite|Satellite	Litaf	Mappable	ENCODE Overlap
-chr16	93788192	93790384	(CCCTAA)n|Simple_repeat|Simple_repeat	2310043M15Rik	Mappable	ENCODE Overlap
-chr16	3338885	3339554	RLTR22_Mus|LTR|ERVK	Olfr161	Mappable	Unique
-chr16	57390113	57392676	LSU-rRNA_Hsa|rRNA|rRNA	Filip1l	Mappable	Unique
-chr16	98106437	98108768	(TTAGGG)n|Simple_repeat|Simple_repeat	A630089N07Rik	Mappable	ENCODE Overlap
-chr16	3267680	3269997	Lx|LINE|L1	Olfr161	Mappable	ENCODE Overlap
-chr16	3340104	3341863	L1_Mur3|LINE|L1	Olfr161	Mappable	ENCODE Overlap
-chr16	38087847	38090558	promoter-TSS (NR_033221)	BC031361	Mappable	ENCODE Overlap
-chr16	3230586	3249217	Intergenic	Olfr161	Mappable	ENCODE Overlap
-chr16	17221214	17223525	LSU-rRNA_Hsa|rRNA|rRNA	Hic2	Mappable	ENCODE Overlap
-chr17	84460688	84464659	"intron (NM_183021, intron 2 of 37)"	Thada	Mappable	ENCODE Overlap
-chr17	67740307	67742635	(CCCTAA)n|Simple_repeat|Simple_repeat	Lama1	Mappable	Unique
-chr17	39841997	39849829	"non-coding (NR_046233, exon 1 of 1)"	Rn45s	Mappable	ENCODE Overlap
-chr17	3075361	3085806	"intron (NR_003519, intron 2 of 7)"	Pisd-ps2	Mappable	ENCODE Overlap
-chr17	13584722	13592605	Intergenic	2700054A10Rik	Mappable	ENCODE Overlap
-chr17	4625167	4627603	(CACTC)n|Simple_repeat|Simple_repeat	4930517M08Rik	Mappable	ENCODE Overlap
-chr17	23533391	23533512	Intergenic	6330415G19Rik	Mappable	Unique
-chr17	13547119	13554228	(CTGTG)n|Simple_repeat|Simple_repeat	2700054A10Rik	Mappable	ENCODE Overlap
-chr17	3004168	3039892	(TACTG)n|Simple_repeat|Simple_repeat	Pisd-ps2	Lowly	ENCODE Overlap
-chr17	29101439	29109513	Intergenic	Rab44	Mappable	ENCODE Overlap
-chr17	13653613	13656298	Intergenic	2700054A10Rik	Mappable	ENCODE Overlap
-chr17	22875275	22877883	LSU-rRNA_Hsa|rRNA|rRNA	Zfp945	Mappable	ENCODE Overlap
-chr17	13304955	13307295	(CTGTG)n|Simple_repeat|Simple_repeat	Tcp10c	Mappable	ENCODE Overlap
-chr17	23530536	23533349	Intergenic	6330415G19Rik	Mappable	ENCODE Overlap
-chr17	70962658	70964891	LSU-rRNA_Hsa|rRNA|rRNA	Myl12b	Mappable	ENCODE Overlap
-chr17	36230224	36232605	CpG	Rpp21	Mappable	ENCODE Overlap
-chr18	40307015	40309403	"intron (NM_026135, intron 2 of 2)"		Mappable	ENCODE Overlap
-chr18	82160214	82171948	Intergenic	Mir5127	Mappable	ENCODE Overlap
-chr18	20619926	20621235	L1M3e|LINE|L1	Ttr	Mappable	Unique
-chr18	20624339	20624494	L1M3e|LINE|L1	Ttr	Mappable	Unique
-chr18	20617575	20617982	L1M3e|LINE|L1	Ttr	Lowly	Unique
-chr18	85696926	85699291	LSU-rRNA_Hsa|rRNA|rRNA	Neto1	Mappable	Unique
-chr18	3113805	3120973	Intergenic	Vmn1r238	Mappable	ENCODE Overlap
-chr18	90601089	90603639	(TTAGGG)n|Simple_repeat|Simple_repeat	Gm45871	Mappable	ENCODE Overlap
-chr18	4195753	4198816	B3A|SINE|B2	Lyzl1	Mappable	ENCODE Overlap
-chr18	36559007	36561036	promoter-TSS (NM_175375)	Ankhd1	Mappable	ENCODE Overlap
-chr18	3002806	3013833	ERVB4_1B-I_MM-int|LTR|ERVK	Vmn1r238	Mappable	ENCODE Overlap
-chr19	45648970	45651272	B2_Mm2|SINE|B2	Fbxw4	Mappable	ENCODE Overlap
-chr19	53775785	53776977	"intron (NM_001170847, intron 1 of 13)"	Rbm20	Mappable	ENCODE Overlap
-chr19	58112241	58114641	(CACAG)n|Simple_repeat|Simple_repeat	Mir5623	Mappable	ENCODE Overlap
-chr19	39258730	39261328	MTA_Mm-int|LTR|ERVL-MaLR	Cyp2c29	Mappable	ENCODE Overlap
-chr19	39262753	39264236	MTA_Mm|LTR|ERVL-MaLR	Cyp2c29	Mappable	ENCODE Overlap
-chr19	61330275	61332566	(TTAGGG)n|Simple_repeat|Simple_repeat	Csf2ra	Mappable	ENCODE Overlap
-chr19	61262650	61268164	Intergenic	Csf2ra	Mappable	ENCODE Overlap
-chr2	182011584	182014223	(TTAGGG)n|Simple_repeat|Simple_repeat	Gm14496	Mappable	ENCODE Overlap
-chr2	3049003	3052125	B1F1|SINE|Alu	Fam171a1	Mappable	ENCODE Overlap
-chr2	51946088	51948860	(GGA)n|Simple_repeat|Simple_repeat	Rbm43	Lowly	Unique
-chr2	57628489	57630727	(TTAGGG)n|Simple_repeat|Simple_repeat	Galnt5	Mappable	ENCODE Overlap
-chr2	92092600	92094775	(CCCTAA)n|Simple_repeat|Simple_repeat	Creb3l1	Mappable	ENCODE Overlap
-chr2	84714187	84716735	promoter-TSS (NM_144887)	Zdhhc5	Mappable	ENCODE Overlap
-chr2	181927046	181933525	RLTR33|LTR|ERVK	Gm14496	Mappable	ENCODE Overlap
-chr2	22002667	22006682	L1Md_A|LINE|L1	Myo3a	Mappable	ENCODE Overlap
-chr2	5378040	5380376	promoter-TSS (NR_030601)	Mir466d	Mappable	Unique
-chr2	177313551	177316626	MMSAT4|Satellite|Satellite	Zfp970	Mappable	ENCODE Overlap
-chr2	66188206	66190462	(CCCTAA)n|Simple_repeat|Simple_repeat	Galnt3	Mappable	Unique
-chr2	181915695	181920273	Intergenic	Polr3k	Mappable	ENCODE Overlap
-chr2	53190369	53192471	promoter-TSS (NM_022989)		Mappable	Unique
-chr2	20898864	20901198	LSU-rRNA_Hsa|rRNA|rRNA	Arhgap21	Mappable	ENCODE Overlap
-chr2	28182997	28185655	(CCCTAA)n|Simple_repeat|Simple_repeat	Olfm1	Mappable	ENCODE Overlap
-chr2	98661230	98668337	RMER13A1|LTR|ERVK	Lrrc4c	Mappable	ENCODE Overlap
-chr2	22586502	22591198	Intergenic	Gad2	Mappable	ENCODE Overlap
-chr2	22738413	22741056	Intergenic	Apbb1ip	Mappable	ENCODE Overlap
-chr2	121521321	121522185	"intron (NM_001290987, intron 4 of 11)"	Wdr76	Mappable	ENCODE Overlap
-chr2	52695533	52700035	"intron (NM_019667, intron 13 of 13)"	Cacnb4	Mappable	ENCODE Overlap
-chr2	80811835	80815984	L1Md_A|LINE|L1	Nup35	Mappable	ENCODE Overlap
-chr3	91097737	91098269	L1Md_A|LINE|L1	9130204L05Rik	Mappable	ENCODE Overlap
-chr3	159938404	159940680	TTS (NM_001356350)	Wls	Mappable	ENCODE Overlap
-chr3	149051473	149053935	(TTAGGG)n|Simple_repeat|Simple_repeat	Adgrl2	Mappable	ENCODE Overlap
-chr3	95014321	95016552	promoter-TSS (NM_030074)	Zfp687	Mappable	ENCODE Overlap
-chr3	3003499	3005583	Intergenic	Hnf4g	Mappable	ENCODE Overlap
-chr3	5859339	5861826	LSU-rRNA_Hsa|rRNA|rRNA	Pex2	Mappable	ENCODE Overlap
-chr3	3008518	3016611	Intergenic	Hnf4g	Mappable	ENCODE Overlap
-chr3	123676652	123679345	C-rich|Low_complexity|Low_complexity	Ndst3	Mappable	ENCODE Overlap
-chr3	3000306	3003485	Intergenic	Hnf4g	Mappable	Unique
-chr3	8243566	8247573	B2_Mm2|SINE|B2	Gm6194	Mappable	Unique
-chr3	56574432	56576750	GSAT_MM|Satellite|Satellite	Nbea	Mappable	ENCODE Overlap
-chr3	96043520	96046044	"intron (NM_013841, intron 7 of 14)"	Vps45	Mappable	ENCODE Overlap
-chr3	62158100	62160335	LSU-rRNA_Hsa|rRNA|rRNA	Arhgef26	Mappable	Unique
-chr3	3027935	3033946	Intergenic	Hnf4g	Mappable	ENCODE Overlap
-chr3	60044058	60047062	(CACAG)n|Simple_repeat|Simple_repeat	Aadac	Mappable	ENCODE Overlap
-chr3	99980113	99982394	GSAT_MM|Satellite|Satellite	Spag17	Mappable	ENCODE Overlap
-chr4	31775994	31778602	L1Md_A|LINE|L1	Map3k7	Lowly	ENCODE Overlap
-chr4	146599418	146600571	L1_Mur1|LINE|L1	1700095A21Rik	Mappable	ENCODE Overlap
-chr4	145839807	145842678	Intergenic	Gm13238	Mappable	ENCODE Overlap
-chr4	146262474	146263179	RMER3D-int|LTR|ERVK	Zfp991	Mappable	ENCODE Overlap
-chr4	147255924	147259118	Intergenic		Mappable	ENCODE Overlap
-chr4	3088184	3092574	GSAT_MM|Satellite|Satellite	Vmn1r2	Mappable	ENCODE Overlap
-chr4	146165466	146171513	"intron (NM_001177546, intron 2 of 4)"	Zfp600	Mappable	ENCODE Overlap
-chr4	146497127	146497191	MLTR18A_MM|LTR|ERVK	Zfp981	Mappable	ENCODE Overlap
-chr4	118546006	118549737	G-rich|Low_complexity|Low_complexity	Tmem125	Mappable	ENCODE Overlap
-chr4	147120785	147128930	CpG	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	146498137	146500659	RLTR40|LTR|ERVK	Zfp981	Mappable	ENCODE Overlap
-chr4	145843517	145849997	Intergenic	Gm13238	Lowly	Unique
-chr4	146451432	146455458	"intron (NM_001085522, intron 1 of 3)"	Zfp992	Mappable	ENCODE Overlap
-chr4	147623285	147624916	"intron (NM_145078, intron 2 of 4)"	Zfp979	Mappable	ENCODE Overlap
-chr4	156355655	156358892	Intergenic	Vmn2r123	Mappable	ENCODE Overlap
-chr4	145700850	145703586	"exon (NM_001103158, exon 5 of 5)"	Zfp980	Mappable	ENCODE Overlap
-chr4	147435763	147435792	(GAAA)n|Simple_repeat|Simple_repeat		Mappable	ENCODE Overlap
-chr4	147448735	147450095	"intron (NM_001371349, intron 1 of 3)"		Mappable	ENCODE Overlap
-chr4	146713610	146714207	Intergenic	1700095A21Rik	Mappable	ENCODE Overlap
-chr4	147028189	147033108	"intron (NM_001177767, intron 2 of 4)"	Rex2	Mappable	ENCODE Overlap
-chr4	147389133	147392158	MMSAT4|Satellite|Satellite		Mappable	ENCODE Overlap
-chr4	147452010	147452668	Lx8|LINE|L1		Mappable	ENCODE Overlap
-chr4	70377117	70379256	GSAT_MM|Satellite|Satellite	Cdk5rap2	Mappable	ENCODE Overlap
-chr4	147093921	147096533	L1VL4|LINE|L1	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	147369561	147370310	Lx3B|LINE|L1		Mappable	ENCODE Overlap
-chr4	147447353	147448412	"intron (NM_001371349, intron 1 of 3)"		Mappable	ENCODE Overlap
-chr4	147331641	147333833	MMSAT4|Satellite|Satellite		Mappable	ENCODE Overlap
-chr4	3174089	3178413	Intergenic	Vmn1r2	Mappable	ENCODE Overlap
-chr4	145447894	145450160	Lx2|LINE|L1	Smarca5-ps	Lowly	ENCODE Overlap
-chr4	151860870	151863546	promoter-TSS (NM_001195565)	Camta1	Mappable	ENCODE Overlap
-chr4	3087794	3087824	MTA_Mm-int|LTR|ERVL-MaLR	Vmn1r2	Lowly	ENCODE Overlap
-chr4	145779810	145780077	Intergenic	Zfp991	Mappable	ENCODE Overlap
-chr4	147517884	147524409	Intergenic	Zfp982	Mappable	ENCODE Overlap
-chr4	146259718	146261663	Lx4A|LINE|L1	Zfp991	Mappable	ENCODE Overlap
-chr4	146521337	146522409	Lx3B|LINE|L1	Zfp981	Mappable	ENCODE Overlap
-chr4	145834584	145838868	promoter-TSS (NR_033612)	Gm13238	Mappable	ENCODE Overlap
-chr4	146714489	146716653	B2_Mm2|SINE|B2	1700095A21Rik	Mappable	ENCODE Overlap
-chr4	147635572	147636208	RMER6A|LTR|ERVK	Zfp979	Mappable	ENCODE Overlap
-chr4	147368968	147369146	(TATG)n|Simple_repeat|Simple_repeat		Mappable	ENCODE Overlap
-chr4	28175809	28178165	SYNREP_MM|Satellite|Satellite	Epha7	Lowly	ENCODE Overlap
-chr4	146475151	146476549	Intergenic	Zfp981	Mappable	ENCODE Overlap
-chr4	147394988	147407328	RLTR10-int|LTR|ERVK		Mappable	ENCODE Overlap
-chr4	147179879	147180585	Intergenic	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	147377003	147378516	Intergenic		Mappable	ENCODE Overlap
-chr4	3057927	3057951	MTA_Mm-int|LTR|ERVL-MaLR	Vmn1r2	Mappable	ENCODE Overlap
-chr4	147197835	147200824	Intergenic	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	147280125	147280832	Lx|LINE|L1		Mappable	ENCODE Overlap
-chr4	146172343	146177455	B2_Mm1a|SINE|B2	Zfp600	Mappable	ENCODE Overlap
-chr4	145685329	145689863	"intron (NM_001103158, intron 2 of 4)"	Zfp980	Mappable	ENCODE Overlap
-chr4	145828383	145829917	"non-coding (NR_040355, exon 5 of 5)"	Gm13238	Mappable	ENCODE Overlap
-chr4	146716992	146721348	MMSAT4|Satellite|Satellite	1700095A21Rik	Mappable	ENCODE Overlap
-chr4	147348882	147351051	Intergenic		Mappable	ENCODE Overlap
-chr4	147309454	147310788	RMER6A|LTR|ERVK		Mappable	ENCODE Overlap
-chr4	146436307	146436832	"intron (NM_001083918, intron 3 of 6).2"	Zfp992	Mappable	ENCODE Overlap
-chr4	147636285	147638009	Lx8|LINE|L1	Zfp979	Mappable	ENCODE Overlap
-chr4	3078688	3087634	Intergenic	Vmn1r2	Mappable	ENCODE Overlap
-chr4	147450308	147451358	"intron (NM_001371349, intron 1 of 3)"		Mappable	ENCODE Overlap
-chr4	147365623	147366636	Intergenic		Mappable	ENCODE Overlap
-chr4	156339577	156344853	Intergenic	Vmn2r123	Lowly	ENCODE Overlap
-chr4	147418158	147435518	Intergenic		Mappable	ENCODE Overlap
-chr4	146273258	146273750	Lx8|LINE|L1	Zfp991	Lowly	ENCODE Overlap
-chr4	146477296	146496949	Intergenic	Zfp981	Lowly	ENCODE Overlap
-chr4	147057335	147058419	"exon (NM_001177767, exon 5 of 5)"	4933438K21Rik	Lowly	ENCODE Overlap
-chr4	145830595	145831382	"non-coding (NR_040355, exon 5 of 5)"	Gm13238	Lowly	ENCODE Overlap
-chr4	147414962	147417956	Intergenic		Mappable	ENCODE Overlap
-chr4	3179430	3183184	Intergenic	Vmn1r3	Mappable	ENCODE Overlap
-chr4	147435947	147440573	Lx3_Mus|LINE|L1		Mappable	ENCODE Overlap
-chr4	3228412	3229946	LTR16C|LTR|ERVL	Vmn1r3	Mappable	ENCODE Overlap
-chr4	146514744	146515880	"intron (NM_001243139, intron 1 of 3)"	Zfp981	Mappable	ENCODE Overlap
-chr4	3057958	3070939	Intergenic	Vmn1r2	Mappable	ENCODE Overlap
-chr4	147334486	147346844	B3A|SINE|B2		Mappable	ENCODE Overlap
-chr4	147119579	147119821	L1_Mur1|LINE|L1	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	145679625	145681903	"intron (NM_001103158, intron 2 of 4)"	Zfp980	Mappable	ENCODE Overlap
-chr4	147231094	147237178	Intergenic	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	147512797	147513189	"exon (NM_001371348, exon 5 of 5)"	Zfp982	Mappable	ENCODE Overlap
-chr4	3049009	3057589	Intergenic	Vmn1r2	Lowly	ENCODE Overlap
-chr4	3178935	3178988	Intergenic	Vmn1r3	Mappable	ENCODE Overlap
-chr4	3224191	3227875	MER90a|LTR|ERV1	Vmn1r3	Lowly	ENCODE Overlap
-chr4	146164049	146164808	"intron (NM_001177546, intron 2 of 4)"	Zfp600	Lowly	ENCODE Overlap
-chr4	147355319	147357412	MLTR18A_MM|LTR|ERVK		Lowly	ENCODE Overlap
-chr4	147362443	147364013	Lx8|LINE|L1		Mappable	ENCODE Overlap
-chr4	149809055	149811758	Intergenic	Slc25a33	Mappable	ENCODE Overlap
-chr4	147755337	147756655	"exon (NM_001127189, exon 6 of 6)"	Zfp534	Mappable	ENCODE Overlap
-chr4	147407719	147414944	Lx2|LINE|L1		Mappable	Unique
-chr4	147194720	147197718	RLTR13D3|LTR|ERVK	4933438K21Rik	Mappable	ENCODE Overlap
-chr4	145438840	145440729	Intergenic	Smarca5-ps	Mappable	ENCODE Overlap
-chr5	15615268	15615413	ORR1A1-int|LTR|ERVL-MaLR	Speer4d	Mappable	ENCODE Overlap
-chr5	14957881	14964120	"intron (NR_001584, intron 2 of 3)"	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	14913423	14914073	"intron (NM_198666, intron 1 of 4)"	Gm9758	Mappable	ENCODE Overlap
-chr5	15586655	15587094	Lx5c|LINE|L1	Gm21083	Mappable	ENCODE Overlap
-chr5	15034396	15046044	Lx2A1|LINE|L1	Gm17019	Mappable	ENCODE Overlap
-chr5	15687776	15694810	"intron (NR_001585, intron 1 of 4)"	Speer4cos	Mappable	ENCODE Overlap
-chr5	125388874	125389027	B1_Mus1|SINE|Alu	Ubc	Lowly	ENCODE Overlap
-chr5	14940146	14942209	ORR1A1|LTR|ERVL-MaLR	Speer4e	Mappable	ENCODE Overlap
-chr5	15634328	15634761	ORR1A3|LTR|ERVL-MaLR	Speer4d	Mappable	ENCODE Overlap
-chr5	14917775	14921130	ORR1A1-int|LTR|ERVL-MaLR	Gm9758	Mappable	ENCODE Overlap
-chr5	15677087	15682991	promoter-TSS (NR_001585)	Speer4cos	Mappable	ENCODE Overlap
-chr5	15026604	15026773	L1_Mur2|LINE|L1	Gm17019	Mappable	ENCODE Overlap
-chr5	114921404	114923609	promoter-TSS (NM_145209)	Oasl1	Mappable	ENCODE Overlap
-chr5	25815652	25819492	(CTGTG)n|Simple_repeat|Simple_repeat	Actr3b	Mappable	ENCODE Overlap
-chr5	15497437	15500155	Lx7|LINE|L1	Gm21190	Mappable	ENCODE Overlap
-chr5	15613353	15614537	RLTR19|LTR|ERVK	Speer4d	Mappable	ENCODE Overlap
-chr5	104329746	104333160	(CACAG)n|Simple_repeat|Simple_repeat	Mepe	Mappable	ENCODE Overlap
-chr5	14932264	14933958	TTS (NM_001122661)	Speer4e	Mappable	ENCODE Overlap
-chr5	14951800	14952432	"intron (NR_001584, intron 1 of 3)"	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	32732901	32735224	Intergenic	Pisd	Mappable	ENCODE Overlap
-chr5	109556534	109559507	"intron (NM_001310694, intron 1 of 7)"	Crlf2	Mappable	ENCODE Overlap
-chr5	15478820	15485756	RMER6BA|LTR|ERVK	Gm21190	Mappable	ENCODE Overlap
-chr5	15507626	15518299	L1_Mm|LINE|L1	Gm21190	Mappable	ENCODE Overlap
-chr5	15459668	15464106	Intergenic	Gm21190	Mappable	ENCODE Overlap
-chr5	14934781	14935308	"exon (NM_001122661, exon 4 of 5)"	Speer4e	Mappable	ENCODE Overlap
-chr5	32736914	32739312	"exon (NM_001347332, exon 8 of 9)"	Pisd	Mappable	ENCODE Overlap
-chr5	14953678	14957075	Lx|LINE|L1	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	137151217	137153727	"exon (NM_010843, exon 3 of 13)"	Muc3	Mappable	ENCODE Overlap
-chr5	14985270	14992323	ORR1A3|LTR|ERVL-MaLR	Gm10354	Mappable	ENCODE Overlap
-chr5	15486560	15489053	Intergenic	Gm21190	Mappable	ENCODE Overlap
-chr5	15629147	15633869	Intergenic	Speer4d	Mappable	ENCODE Overlap
-chr5	15709317	15713682	"intron (NR_001585, intron 4 of 4)"	Speer4c	Mappable	ENCODE Overlap
-chr5	15017202	15021309	Intergenic	Gm17019	Mappable	ENCODE Overlap
-chr5	15551423	15556883	MTD|LTR|ERVL-MaLR	Gm21083	Mappable	ENCODE Overlap
-chr5	14950778	14951661	"intron (NR_001584, intron 1 of 3)"	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	15579113	15583633	"intron (NM_001310450, intron 4 of 4)"	Gm21083	Mappable	ENCODE Overlap
-chr5	14909644	14910139	TTS (NM_198666)	Gm9758	Mappable	ENCODE Overlap
-chr5	14950133	14950691	MTEa|LTR|ERVL-MaLR	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	14971252	14974797	L1_Mus4|LINE|L1	Gm10354	Mappable	ENCODE Overlap
-chr5	15010328	15011975	RMER17A|LTR|ERVK	Gm17019	Mappable	ENCODE Overlap
-chr5	14942455	14942460	ORR1A1-int|LTR|ERVL-MaLR	Speer8-ps1	Mappable	ENCODE Overlap
-chr5	15466369	15466693	Intergenic	Gm21190	Mappable	ENCODE Overlap
-chr5	14983568	14984680	RLTR19|LTR|ERVK	Gm10354	Mappable	ENCODE Overlap
-chr5	15003599	15009785	Intergenic	Gm17019	Mappable	ENCODE Overlap
-chr5	14993381	14998101	Intergenic	Gm10354	Mappable	ENCODE Overlap
-chr5	15639785	15646403	Intergenic	4930572O03Rik	Mappable	ENCODE Overlap
-chr5	15021751	15024895	Intergenic	Gm17019	Mappable	ENCODE Overlap
-chr5	135148198	135150687	promoter-TSS (NM_013763)	Tbl2	Mappable	ENCODE Overlap
-chr5	146259978	146262365	LSU-rRNA_Hsa|rRNA|rRNA	Cdk8	Mappable	ENCODE Overlap
-chr5	15605403	15608337	MTD|LTR|ERVL-MaLR	Speer4d	Mappable	ENCODE Overlap
-chr5	15702276	15704787	"intron (NR_001585, intron 2 of 4)"	Speer4c	Mappable	ENCODE Overlap
-chr5	14979650	14983004	Intergenic	Gm10354	Mappable	ENCODE Overlap
-chr5	36659924	36662570	"intron (NM_001081232, intron 2 of 8)"	D5Ertd579e	Mappable	ENCODE Overlap
-chr5	15620009	15626203	"intron (NM_025759, intron 4 of 4)"	Speer4d	Mappable	ENCODE Overlap
-chr5	15650145	15656407	"intron (NR_073011, intron 4 of 4)"	4930572O03Rik	Mappable	ENCODE Overlap
-chr5	125385640	125388609	"exon (NM_019639, exon 2 of 2)"	Ubc	Mappable	ENCODE Overlap
-chr5	15658545	15663465	ORR1A1-int|LTR|ERVL-MaLR	4930572O03Rik	Mappable	ENCODE Overlap
-chr5	15657677	15657682	promoter-TSS (NR_073011)	4930572O03Rik	Mappable	ENCODE Overlap
-chr5	15619206	15619829	"intron (NM_025759, intron 1 of 4)"	Speer4d	Mappable	Unique
-chr5	15526874	15529178	"exon (NM_001310449, exon 2 of 5)"	Gm21190	Mappable	Unique
-chr5	15636219	15639197	RMER17A|LTR|ERVK	Speer4d	Mappable	Unique
-chr5	15589001	15591949	RMER6D|LTR|ERVK	Gm21083	Mappable	Unique
-chr5	15595224	15597954	RMER17A|LTR|ERVK	Gm21083	Mappable	ENCODE Overlap
-chr5	32725095	32731380	Lx9|LINE|L1	Pisd	Mappable	ENCODE Overlap
-chr5	36629423	36631766	"intron (NM_001081232, intron 2 of 8)"	Tbc1d14	Mappable	Unique
-chr5	15576662	15577621	"5' UTR (NM_001310450, exon 1 of 5)"	Gm21083	Mappable	Unique
-chr5	15050630	15055837	Intergenic	Gm17019	Mappable	ENCODE Overlap
-chr5	15696564	15699401	L1_Mus3|LINE|L1	Speer4c	Mappable	Unique
-chr5	15670223	15673356	Intergenic	Speer4cos	Mappable	Unique
-chr5	15530483	15530524	RLTR19|LTR|ERVK	Gm21190	Mappable	Unique
-chr5	15466890	15474923	Intergenic	Gm21190	Mappable	ENCODE Overlap
-chr5	15600186	15600717	Intergenic	Speer4d	Mappable	ENCODE Overlap
-chr5	147610435	147612632	(TTAGGG)n|Simple_repeat|Simple_repeat	Flt1	Mappable	Unique
-chr6	47770689	47773524	CpG	Rn4.5s	Mappable	ENCODE Overlap
-chr6	103648046	103650294	SYNREP_MM|Satellite|Satellite	Chl1	Mappable	ENCODE Overlap
-chr6	3049424	3052069	Intergenic	Gm8579	Mappable	ENCODE Overlap
-chr6	4922733	4925199	(CCCTAA)n|Simple_repeat|Simple_repeat	Ppp1r9a	Mappable	ENCODE Overlap
-chr6	47650957	47687580	RMER12B|LTR|ERVK	Rn4.5s	Mappable	ENCODE Overlap
-chr6	29746689	29750155	(CTGTG)n|Simple_repeat|Simple_repeat	Smo	Mappable	ENCODE Overlap
-chr6	47737204	47770613	promoter-TSS (NR_002841).3	Rn4.5s	Mappable	ENCODE Overlap
-chr6	53082921	53085555	(TTAGGG)n|Simple_repeat|Simple_repeat	Jazf1	Mappable	ENCODE Overlap
-chr6	114340023	114343200	(CACAG)n|Simple_repeat|Simple_repeat	Hrh1	Mappable	Unique
-chr6	47776922	47778288	Intergenic	Rn4.5s	Mappable	ENCODE Overlap
-chr6	3199768	3202671	SSU-rRNA_Hsa|rRNA|rRNA	Gm8579	Mappable	ENCODE Overlap
-chr7	123021275	123023624	(GGA)n|Simple_repeat|Simple_repeat	Rbbp6	Mappable	ENCODE Overlap
-chr7	64072406	64091442	Intergenic	Trpm1	Mappable	Unique
-chr7	59765859	59773433	"intron (NR_146211, intron 58 of 171)"	Snord116l2	Mappable	Unique
-chr7	127026136	127028492	promoter-TSS (NM_010772)	Maz	Mappable	ENCODE Overlap
-chr7	59735343	59738480	"intron (NR_146211, intron 68 of 171)"	Gm26504	Mappable	ENCODE Overlap
-chr7	56160687	56162801	"intron (NM_001360080, intron 48 of 92)"	Oca2	Mappable	ENCODE Overlap
-chr7	59750257	59750403	"intron (NR_146211, intron 64 of 171)"	Snord116l1	Mappable	ENCODE Overlap
-chr7	19227265	19229911	CpG	Opa3	Lowly	ENCODE Overlap
-chr7	59743058	59744898	"intron (NR_146211, intron 66 of 171)"	Snord116l1	Mappable	ENCODE Overlap
-chr7	128185847	128189343	"intron (NM_001029872, intron 11 of 30)"	Itgad	Mappable	ENCODE Overlap
-chr7	59860606	59861165	"intron (NR_146211, intron 43 of 171)"	Snord116l2	Mappable	ENCODE Overlap
-chr7	59777820	59777966	(TG)n|Simple_repeat|Simple_repeat	Snord116l2	Mappable	ENCODE Overlap
-chr7	72651872	72653772	L1Md_A|LINE|L1	Mctp2	Mappable	ENCODE Overlap
-chr7	12009344	12017164	Intergenic	Vmn1r77	Mappable	ENCODE Overlap
-chr7	79828758	79830562	"intron (NM_008486, intron 15 of 20)"	Anpep	Mappable	ENCODE Overlap
-chr7	59867127	59870112	"intron (NR_146211, intron 41 of 171)"	Snord64	Mappable	ENCODE Overlap
-chr7	25266685	25269342	"intron (NM_001302811, intron 1 of 20)"	Cic	Mappable	ENCODE Overlap
-chr7	59861276	59863853	"intron (NR_146211, intron 43 of 171)"	Snord116l2	Mappable	ENCODE Overlap
-chr7	145339924	145342459	(TTAGGG)n|Simple_repeat|Simple_repeat	Mrgprd	Mappable	ENCODE Overlap
-chr7	59734760	59735130	(TG)n|Simple_repeat|Simple_repeat	Gm26504	Mappable	Unique
-chr7	59797261	59797920	"intron (NR_146211, intron 47 of 171)"	Snord116l2	Mappable	ENCODE Overlap
-chr7	64466765	64472321	Intergenic	Apba2	Mappable	Unique
-chr7	64472787	64495602	Intergenic	Apba2	Mappable	Unique
-chr7	59777436	59777688	"intron (NR_146211, intron 55 of 171)"	Snord116l2	Mappable	ENCODE Overlap
-chr7	112636731	112640157	Intergenic	Tead1	Mappable	ENCODE Overlap
-chr8	20108891	20117932	Lx4A|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20634388	20634922	"intron (NM_001270553, intron 6 of 9)"	Gm21119	Mappable	ENCODE Overlap
-chr8	20628419	20628940	Lx5|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	58094780	58097224	L1Md_A|LINE|L1	Galnt7	Mappable	ENCODE Overlap
-chr8	55345108	55356208	Intergenic	Gpm6a	Mappable	ENCODE Overlap
-chr8	20557580	20561181	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	19914830	19917323	L1_Mus4|LINE|L1	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	83755700	83757986	(CCCTAA)n|Simple_repeat|Simple_repeat	Adgre5	Mappable	ENCODE Overlap
-chr8	20093115	20105279	Intergenic	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	19721390	19737352	promoter-TSS (NM_001270553).2	Gm21119	Mappable	ENCODE Overlap
-chr8	20054693	20062207	"intron (NM_001270553, intron 7 of 9).2"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20541398	20553100	B1_Mus1|SINE|Alu	Gm21119	Mappable	ENCODE Overlap
-chr8	20029253	20029457	"intron (NM_001270553, intron 6 of 9).2"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20501720	20533726	L1_Mus3|LINE|L1	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	19712220	19714063	(GA)n|Simple_repeat|Simple_repeat	Gm21119	Mappable	ENCODE Overlap
-chr8	55358111	55361564	Intergenic	Gpm6a	Mappable	ENCODE Overlap
-chr8	19758478	19761260	"intron (NM_001270553, intron 6 of 9).2"	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	20565579	20567175	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20047169	20052201	L1Md_A|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20634276	20634295	"intron (NM_001270553, intron 6 of 9)"	Gm21119	Mappable	ENCODE Overlap
-chr8	20263088	20264957	ID4_|SINE|ID	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	19782859	19787731	"intron (NM_001270553, intron 6 of 9).2"	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	19774084	19778539	Lx4A|LINE|L1	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	20258137	20261081	Intergenic	6820431F20Rik	Lowly	ENCODE Overlap
-chr8	20023802	20026328	"intron (NM_001270553, intron 6 of 9).2"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20136729	20150793	L1_Mus2|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20641086	20651070	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20079982	20087319	Intergenic	6820431F20Rik	Lowly	ENCODE Overlap
-chr8	19903843	19914679	L1Md_F3|LINE|L1	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	55369073	55376371	Intergenic	Gpm6a	Mappable	ENCODE Overlap
-chr8	20494398	20499504	L1_Mus4|LINE|L1	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	19766333	19767937	L1_Mus4|LINE|L1	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	19692938	19693198	B2_Mm2|SINE|B2	Gm21119	Mappable	ENCODE Overlap
-chr8	20400724	20414672	L1_Mus2|LINE|L1	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	123567489	123568730	Intergenic	Gm22291	Mappable	ENCODE Overlap
-chr8	20690916	20707927	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20026678	20028442	L1VL4|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	23094430	23096804	GSAT_MM|Satellite|Satellite	Ank1	Mappable	ENCODE Overlap
-chr8	15518786	15521117	LSU-rRNA_Hsa|rRNA|rRNA	Myom2	Mappable	ENCODE Overlap
-chr8	20415237	20426499	"intron (NR_028428, intron 1 of 5)"	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	20348879	20352973	Lx5|LINE|L1	Gm15319	Mappable	ENCODE Overlap
-chr8	20124703	20135310	RLTR13A2|LTR|ERVK	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20322407	20323195	L1_Mus4|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20710569	20711926	L1_Mus3|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	20119951	20124094	Intergenic	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	19926961	19936891	"intron (NM_001270553, intron 6 of 9).2"	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	20688029	20688503	Lx4A|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	20635506	20640770	"intron (NM_001270553, intron 8 of 9)"	Gm21119	Mappable	ENCODE Overlap
-chr8	19697279	19711741	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20653638	20670423	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20432980	20442727	L1_Mus2|LINE|L1	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	123542674	123544268	TTS (NR_046155).5	Gm22291	Mappable	ENCODE Overlap
-chr8	20272587	20304081	"intron (NR_030708, intron 1 of 4)"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	55112933	55124672	Intergenic	Gpm6a	Mappable	ENCODE Overlap
-chr8	20628957	20634183	L1_Mus4|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	20811277	20835155	Intergenic	Gm21944	Mappable	ENCODE Overlap
-chr8	20327105	20348063	TTS (NM_001177408)	Gm15319	Mappable	ENCODE Overlap
-chr8	20358921	20399684	URR1A|DNA|hAT-Charlie	Gm15319	Mappable	ENCODE Overlap
-chr8	20428997	20432208	Intergenic	2610005L07Rik	Mappable	ENCODE Overlap
-chr8	20119222	20119824	Intergenic	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20534489	20541206	L1_Mus4|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	20570366	20628202	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	19751688	19754146	"3' UTR (NM_001039553, exon 10 of 10)"	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	20265183	20269007	Intergenic	6820431F20Rik	Lowly	ENCODE Overlap
-chr8	20062360	20062381	"3' UTR (NM_001270553, exon 10 of 10).2"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	19789587	19792874	"intron (NM_001270553, intron 6 of 9).2"	4930467E23Rik	Mappable	ENCODE Overlap
-chr8	55361851	55365675	Intergenic	Gpm6a	Mappable	ENCODE Overlap
-chr8	20068168	20073790	Intergenic	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20066904	20068123	ORR1D1|LTR|ERVL-MaLR	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	123544585	123546137	TTS (NR_046147)	Gm22291	Lowly	ENCODE Overlap
-chr8	20152642	20156368	L2c|LINE|L2	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	123539730	123539879	promoter-TSS (NR_046127)	Gm25212	Lowly	ENCODE Overlap
-chr8	19715034	19721099	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	20312042	20315103	L1_Mus2|LINE|L1	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	123554758	123555015	TTS (NR_046152).4	Gm22291	Mappable	ENCODE Overlap
-chr8	19681132	19684756	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	14305741	14308369	"intron (NM_001145965, intron 2 of 14)"	Dlgap2	Mappable	ENCODE Overlap
-chr8	20534339	20534342	L1_Mus4|LINE|L1	Gm21119	Mappable	ENCODE Overlap
-chr8	20022728	20023668	"intron (NM_001270553, intron 6 of 9).2"	6820431F20Rik	Mappable	ENCODE Overlap
-chr8	20033974	20044377	"intron (NM_001270553, intron 6 of 9).2"	6820431F20Rik	Mappable	Unique
-chr8	20563416	20563632	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	19691377	19692371	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	71840086	71840699	L1Md_F2|LINE|L1	Zfp709	Lowly	ENCODE Overlap
-chr8	20017164	20019193	MLTR11A|LTR|ERVK	6820431F20Rik	Lowly	ENCODE Overlap
-chr8	20674137	20686766	Intergenic	Gm21119	Mappable	ENCODE Overlap
-chr8	19801145	19802211	"intron (NM_001270553, intron 6 of 9).2"	4930467E23Rik	Lowly	ENCODE Overlap
-chr8	20151869	20152461	LTRIS2|LTR|ERV1	6820431F20Rik	Mappable	ENCODE Overlap
-chr9	24540850	24543161	Intergenic	Dpy19l1	Mappable	ENCODE Overlap
-chr9	13826077	13828641	promoter-TSS (NM_001310721)	Cep57	Mappable	ENCODE Overlap
-chr9	121040718	121043408	CpG	Mir7090	Mappable	Unique
-chr9	3257636	3260113	LSU-rRNA_Hsa|rRNA|rRNA	4930433N12Rik	Mappable	ENCODE Overlap
-chr9	124255276	124259014	Intergenic	2010315B03Rik	Mappable	ENCODE Overlap
-chr9	2999001	3039419	GSAT_MM|Satellite|Satellite	Mir101c	Mappable	ENCODE Overlap
-chr9	35304216	35306651	GSAT_MM|Satellite|Satellite	4933422A05Rik	Mappable	Unique
-chr9	69098573	69101274	(CTGTG)n|Simple_repeat|Simple_repeat	Rora	Mappable	Unique
-chr9	80956734	80958661	L1Md_T|LINE|L1	Impg1	Mappable	Unique
-chr9	56222572	56224955	LSU-rRNA_Hsa|rRNA|rRNA	Tspan3	Mappable	Unique
-chr9	123460769	123463292	"3' UTR (NM_001348168, exon 22 of 22)"	Limd1	Mappable	ENCODE Overlap
-chr9	123923333	123927203	CpG	Ccr1	Mappable	ENCODE Overlap
-chr9	57074846	57077403	promoter-TSS (NM_001110350)	2700012I20Rik	Mappable	ENCODE Overlap
-chr9	70622071	70624471	(CTGTG)n|Simple_repeat|Simple_repeat	Mindy2	Mappable	ENCODE Overlap
-chrM	1	16299	Intergenic		Mappable	ENCODE Overlap
-chrX	66493813	66495424	L1Md_F|LINE|L1	Slitrk2	Lowly	Unique
-chrX	170859260	170860477	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	94885885	94886140	T-rich|Low_complexity|Low_complexity	Zxda	Mappable	Unique
-chrX	170863437	170864018	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	91841304	91844066	L1Md_T|LINE|L1	Mageb5	Lowly	ENCODE Overlap
-chrX	94880959	94881406	Intergenic	Zxda	Lowly	ENCODE Overlap
-chrX	135041381	135044770	"intron (NR_040282, intron 2 of 3)"	3632454L22Rik	Mappable	ENCODE Overlap
-chrX	94890211	94890326	Intergenic	Zxda	Mappable	ENCODE Overlap
-chrX	170861113	170861516	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	169985134	170023444	Intergenic	G530011O06Rik	Mappable	ENCODE Overlap
-chrX	112369696	112372262	"intron (NM_026565, intron 8 of 8)"	Satl1	Lowly	Unique
-chrX	94902538	94903991	Intergenic	Zxda	Mappable	ENCODE Overlap
-chrX	170879924	170882299	(TTAGGG)n|Simple_repeat|Simple_repeat	Asmt	Mappable	ENCODE Overlap
-chrX	94912627	94916014	Intergenic	Spin4	Mappable	ENCODE Overlap
-chrX	170854230	170858346	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	76597457	76600136	SYNREP_MM|Satellite|Satellite	Cldn34d	Mappable	ENCODE Overlap
-chrX	94907642	94908233	B1_Mus1|SINE|Alu	Zxda	Mappable	ENCODE Overlap
-chrX	170732207	170739180	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	170840190	170853863	Intergenic	Asmt	Lowly	ENCODE Overlap
-chrX	170757171	170759511	(TTAGGG)n|Simple_repeat|Simple_repeat	Asmt	Lowly	ENCODE Overlap
-chrX	170830178	170834176	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	143482005	143484125	SYNREP_MM|Satellite|Satellite	Pak3	Mappable	ENCODE Overlap
-chrX	135051996	135055944	"intron (NR_040282, intron 2 of 3)"	3632454L22Rik	Mappable	ENCODE Overlap
-chrX	170808829	170820055	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	170741375	170743177	Intergenic	Asmt	Mappable	ENCODE Overlap
-chrX	170671790	170674598	"intron (NM_001199212, intron 1 of 7)"	Asmt	Lowly	ENCODE Overlap
-chrX	126770204	126772565	Intergenic	4932411N23Rik	Lowly	ENCODE Overlap
-chrX	117087776	117090043	L1Md_F|LINE|L1	H2afb1	Lowly	ENCODE Overlap
-chrY	139572	147435	(TAGA)n|Simple_repeat|Simple_repeat	1700020D14Rik	Mappable	ENCODE Overlap
-chrY	90810927	90814974	(TTAGGG)n|Simple_repeat|Simple_repeat	G530011O06Rik	Mappable	ENCODE Overlap
-chrY	11856804	11859498	Intergenic	Gm20877	Mappable	ENCODE Overlap
-chrY	90762580	90802093	Intergenic	Erdr1	Mappable	ENCODE Overlap
-chrY	90802573	90810712	"intron (NM_133362, intron 2 of 3)"	Erdr1	Mappable	ENCODE Overlap
-chrY	90759628	90760408	B2_Mm1a|SINE|B2	G530011O06Rik	Mappable	ENCODE Overlap
-chrY	90733806	90745852	Intergenic	G530011O06Rik	Mappable	ENCODE Overlap
-chrY	257193	264671	(TCTA)n|Simple_repeat|Simple_repeat	Gm29089	Mappable	ENCODE Overlap
\ No newline at end of file
+chr4	147638286	147647439
+chr16	3338542	3338708
+chr1	181741994	181745061
+chr1	43776659	43779916
+chr1	85452903	85466403
+chr1	84989001	84996294
+chr1	88210785	88225860
+chr1	133593455	133597064
+chr1	85527647	85528664
+chr1	84961182	84967761
+chr1	195370720	195372965
+chr1	85065013	85065017
+chr1	85230698	85268061
+chr1	88296835	88310839
+chr1	85041960	85048233
+chr1	191396111	191398516
+chr1	63629211	63631806
+chr1	85159040	85172333
+chr1	85570638	85570772
+chr1	85268122	85335650
+chr1	171068450	171072576
+chr1	85477779	85508363
+chr1	88270612	88293020
+chr1	85154287	85155709
+chr1	85212954	85213093
+chr1	85027461	85031109
+chr1	85578857	85636049
+chr1	88226083	88262450
+chr1	171073261	171076658
+chr1	84984333	84986162
+chr1	88263593	88269113
+chr1	85196271	85200746
+chr1	85570878	85573531
+chr1	7396936	7398946
+chr1	86524974	86527723
+chr1	85215765	85216434
+chr1	88293232	88293622
+chr1	26685234	26689325
+chr1	183298135	183300594
+chr1	88294911	88296733
+chr1	24610534	24617184
+chr1	16072734	16074144
+chr1	171080207	171081317
+chr1	171067673	171068300
+chr1	171063539	171065867
+chr1	100179097	100181396
+chr1	85523638	85527190
+chr1	85549826	85555898
+chr1	85003103	85013260
+chr1	85646518	85649958
+chr1	95450930	95453225
+chr1	78572727	78575645
+chr1	85123828	85124899
+chr1	190299616	190304517
+chr1	85037170	85041259
+chr1	84960769	84961175
+chr1	85178595	85185186
+chr1	85073737	85116916
+chr1	195240544	195243014
+chr1	85565428	85567696
+chr1	85337842	85347901
+chr10	81177053	81179869
+chr10	22469495	22472214
+chr10	130593319	130595993
+chr10	58220313	58235253
+chr10	58236676	58240755
+chr10	80621024	80623632
+chr10	3108427	3118165
+chr10	27818052	27823177
+chr10	81319569	81322199
+chr10	27823584	27824808
+chr10	22140821	22144273
+chr11	34680652	34684369
+chr11	3118245	3201063
+chr11	109010646	109013122
+chr11	107197587	107200468
+chr11	54139006	54141736
+chr11	106946994	106948324
+chr11	34542542	34546090
+chr11	3111164	3116055
+chr11	3099001	3105930
+chr11	96976407	96979082
+chr11	88967559	88970540
+chr11	5167853	5170298
+chr12	78349869	78352172
+chr12	69158390	69160592
+chr12	120027628	120030022
+chr12	5057005	5057046
+chr12	20225728	20228048
+chr12	112776555	112784927
+chr12	4218421	4222747
+chr12	5057140	5060225
+chr12	97060428	97062789
+chr12	3108865	3111202
+chr12	113423488	113426173
+chr12	67058082	67060960
+chr12	93575971	93578239
+chr12	59035707	59037804
+chr12	20228876	20235430
+chr12	74802840	74805506
+chr12	69360184	69362481
+chr12	20228316	20228624
+chr13	74527428	74532026
+chr13	58346715	58349853
+chr13	110742967	110745548
+chr13	119488974	119491395
+chr13	120320412	120322639
+chr13	9010688	9013168
+chr13	3371585	3375531
+chr13	119594610	119604524
+chr13	60095990	60098591
+chr13	119605201	119605920
+chr13	13859610	13862009
+chr13	77437837	77440058
+chr13	119607969	119617588
+chr13	44868572	44871024
+chr13	12829672	12831385
+chr13	9833306	9835494
+chr13	13753022	13756110
+chr14	120476521	120479308
+chr14	6636208	6638572
+chr14	7869742	7872517
+chr14	19414676	19420702
+chr14	67714647	67717104
+chr14	69161004	69163446
+chr14	21499408	21502069
+chr14	124800549	124803244
+chr14	8285634	8287903
+chr14	55559045	55561737
+chr15	75084455	75088047
+chr15	9014687	9017345
+chr15	91905616	91911402
+chr15	102404624	102407389
+chr15	58437815	58440686
+chr15	91992118	91993703
+chr15	76102012	76105870
+chr16	86819786	86822244
+chr16	3348513	3353138
+chr16	3112455	3118056
+chr16	11142906	11145315
+chr16	3337067	3337248
+chr16	24582361	24584934
+chr16	3270724	3273299
+chr16	3121810	3124730
+chr16	93991773	93994368
+chr16	10974067	10976278
+chr16	93788192	93790384
+chr16	3338885	3339554
+chr16	57390113	57392676
+chr16	98106437	98108768
+chr16	3267680	3269997
+chr16	3340104	3341863
+chr16	38087847	38090558
+chr16	3230586	3249217
+chr16	17221214	17223525
+chr17	84460688	84464659
+chr17	67740307	67742635
+chr17	39841997	39849829
+chr17	3075361	3085806
+chr17	13584722	13592605
+chr17	4625167	4627603
+chr17	23533391	23533512
+chr17	13547119	13554228
+chr17	3004168	3039892
+chr17	29101439	29109513
+chr17	13653613	13656298
+chr17	22875275	22877883
+chr17	13304955	13307295
+chr17	23530536	23533349
+chr17	70962658	70964891
+chr17	36230224	36232605
+chr18	40307015	40309403
+chr18	82160214	82171948
+chr18	20619926	20621235
+chr18	20624339	20624494
+chr18	20617575	20617982
+chr18	85696926	85699291
+chr18	3113805	3120973
+chr18	90601089	90603639
+chr18	4195753	4198816
+chr18	36559007	36561036
+chr18	3002806	3013833
+chr19	45648970	45651272
+chr19	53775785	53776977
+chr19	58112241	58114641
+chr19	39258730	39261328
+chr19	39262753	39264236
+chr19	61330275	61332566
+chr19	61262650	61268164
+chr2	182011584	182014223
+chr2	3049003	3052125
+chr2	51946088	51948860
+chr2	57628489	57630727
+chr2	92092600	92094775
+chr2	84714187	84716735
+chr2	181927046	181933525
+chr2	22002667	22006682
+chr2	5378040	5380376
+chr2	177313551	177316626
+chr2	66188206	66190462
+chr2	181915695	181920273
+chr2	53190369	53192471
+chr2	20898864	20901198
+chr2	28182997	28185655
+chr2	98661230	98668337
+chr2	22586502	22591198
+chr2	22738413	22741056
+chr2	121521321	121522185
+chr2	52695533	52700035
+chr2	80811835	80815984
+chr3	91097737	91098269
+chr3	159938404	159940680
+chr3	149051473	149053935
+chr3	95014321	95016552
+chr3	3003499	3005583
+chr3	5859339	5861826
+chr3	3008518	3016611
+chr3	123676652	123679345
+chr3	3000306	3003485
+chr3	8243566	8247573
+chr3	56574432	56576750
+chr3	96043520	96046044
+chr3	62158100	62160335
+chr3	3027935	3033946
+chr3	60044058	60047062
+chr3	99980113	99982394
+chr4	31775994	31778602
+chr4	146599418	146600571
+chr4	145839807	145842678
+chr4	146262474	146263179
+chr4	147255924	147259118
+chr4	3088184	3092574
+chr4	146165466	146171513
+chr4	146497127	146497191
+chr4	118546006	118549737
+chr4	147120785	147128930
+chr4	146498137	146500659
+chr4	145843517	145849997
+chr4	146451432	146455458
+chr4	147623285	147624916
+chr4	156355655	156358892
+chr4	145700850	145703586
+chr4	147435763	147435792
+chr4	147448735	147450095
+chr4	146713610	146714207
+chr4	147028189	147033108
+chr4	147389133	147392158
+chr4	147452010	147452668
+chr4	70377117	70379256
+chr4	147093921	147096533
+chr4	147369561	147370310
+chr4	147447353	147448412
+chr4	147331641	147333833
+chr4	3174089	3178413
+chr4	145447894	145450160
+chr4	151860870	151863546
+chr4	3087794	3087824
+chr4	145779810	145780077
+chr4	147517884	147524409
+chr4	146259718	146261663
+chr4	146521337	146522409
+chr4	145834584	145838868
+chr4	146714489	146716653
+chr4	147635572	147636208
+chr4	147368968	147369146
+chr4	28175809	28178165
+chr4	146475151	146476549
+chr4	147394988	147407328
+chr4	147179879	147180585
+chr4	147377003	147378516
+chr4	3057927	3057951
+chr4	147197835	147200824
+chr4	147280125	147280832
+chr4	146172343	146177455
+chr4	145685329	145689863
+chr4	145828383	145829917
+chr4	146716992	146721348
+chr4	147348882	147351051
+chr4	147309454	147310788
+chr4	146436307	146436832
+chr4	147636285	147638009
+chr4	3078688	3087634
+chr4	147450308	147451358
+chr4	147365623	147366636
+chr4	156339577	156344853
+chr4	147418158	147435518
+chr4	146273258	146273750
+chr4	146477296	146496949
+chr4	147057335	147058419
+chr4	145830595	145831382
+chr4	147414962	147417956
+chr4	3179430	3183184
+chr4	147435947	147440573
+chr4	3228412	3229946
+chr4	146514744	146515880
+chr4	3057958	3070939
+chr4	147334486	147346844
+chr4	147119579	147119821
+chr4	145679625	145681903
+chr4	147231094	147237178
+chr4	147512797	147513189
+chr4	3049009	3057589
+chr4	3178935	3178988
+chr4	3224191	3227875
+chr4	146164049	146164808
+chr4	147355319	147357412
+chr4	147362443	147364013
+chr4	149809055	149811758
+chr4	147755337	147756655
+chr4	147407719	147414944
+chr4	147194720	147197718
+chr4	145438840	145440729
+chr5	15615268	15615413
+chr5	14957881	14964120
+chr5	14913423	14914073
+chr5	15586655	15587094
+chr5	15034396	15046044
+chr5	15687776	15694810
+chr5	125388874	125389027
+chr5	14940146	14942209
+chr5	15634328	15634761
+chr5	14917775	14921130
+chr5	15677087	15682991
+chr5	15026604	15026773
+chr5	114921404	114923609
+chr5	25815652	25819492
+chr5	15497437	15500155
+chr5	15613353	15614537
+chr5	104329746	104333160
+chr5	14932264	14933958
+chr5	14951800	14952432
+chr5	32732901	32735224
+chr5	109556534	109559507
+chr5	15478820	15485756
+chr5	15507626	15518299
+chr5	15459668	15464106
+chr5	14934781	14935308
+chr5	32736914	32739312
+chr5	14953678	14957075
+chr5	137151217	137153727
+chr5	14985270	14992323
+chr5	15486560	15489053
+chr5	15629147	15633869
+chr5	15709317	15713682
+chr5	15017202	15021309
+chr5	15551423	15556883
+chr5	14950778	14951661
+chr5	15579113	15583633
+chr5	14909644	14910139
+chr5	14950133	14950691
+chr5	14971252	14974797
+chr5	15010328	15011975
+chr5	14942455	14942460
+chr5	15466369	15466693
+chr5	14983568	14984680
+chr5	15003599	15009785
+chr5	14993381	14998101
+chr5	15639785	15646403
+chr5	15021751	15024895
+chr5	135148198	135150687
+chr5	146259978	146262365
+chr5	15605403	15608337
+chr5	15702276	15704787
+chr5	14979650	14983004
+chr5	36659924	36662570
+chr5	15620009	15626203
+chr5	15650145	15656407
+chr5	125385640	125388609
+chr5	15658545	15663465
+chr5	15657677	15657682
+chr5	15619206	15619829
+chr5	15526874	15529178
+chr5	15636219	15639197
+chr5	15589001	15591949
+chr5	15595224	15597954
+chr5	32725095	32731380
+chr5	36629423	36631766
+chr5	15576662	15577621
+chr5	15050630	15055837
+chr5	15696564	15699401
+chr5	15670223	15673356
+chr5	15530483	15530524
+chr5	15466890	15474923
+chr5	15600186	15600717
+chr5	147610435	147612632
+chr6	47770689	47773524
+chr6	103648046	103650294
+chr6	3049424	3052069
+chr6	4922733	4925199
+chr6	47650957	47687580
+chr6	29746689	29750155
+chr6	47737204	47770613
+chr6	53082921	53085555
+chr6	114340023	114343200
+chr6	47776922	47778288
+chr6	3199768	3202671
+chr7	123021275	123023624
+chr7	64072406	64091442
+chr7	59765859	59773433
+chr7	127026136	127028492
+chr7	59735343	59738480
+chr7	56160687	56162801
+chr7	59750257	59750403
+chr7	19227265	19229911
+chr7	59743058	59744898
+chr7	128185847	128189343
+chr7	59860606	59861165
+chr7	59777820	59777966
+chr7	72651872	72653772
+chr7	12009344	12017164
+chr7	79828758	79830562
+chr7	59867127	59870112
+chr7	25266685	25269342
+chr7	59861276	59863853
+chr7	145339924	145342459
+chr7	59734760	59735130
+chr7	59797261	59797920
+chr7	64466765	64472321
+chr7	64472787	64495602
+chr7	59777436	59777688
+chr7	112636731	112640157
+chr8	20108891	20117932
+chr8	20634388	20634922
+chr8	20628419	20628940
+chr8	58094780	58097224
+chr8	55345108	55356208
+chr8	20557580	20561181
+chr8	19914830	19917323
+chr8	83755700	83757986
+chr8	20093115	20105279
+chr8	19721390	19737352
+chr8	20054693	20062207
+chr8	20541398	20553100
+chr8	20029253	20029457
+chr8	20501720	20533726
+chr8	19712220	19714063
+chr8	55358111	55361564
+chr8	19758478	19761260
+chr8	20565579	20567175
+chr8	20047169	20052201
+chr8	20634276	20634295
+chr8	20263088	20264957
+chr8	19782859	19787731
+chr8	19774084	19778539
+chr8	20258137	20261081
+chr8	20023802	20026328
+chr8	20136729	20150793
+chr8	20641086	20651070
+chr8	20079982	20087319
+chr8	19903843	19914679
+chr8	55369073	55376371
+chr8	20494398	20499504
+chr8	19766333	19767937
+chr8	19692938	19693198
+chr8	20400724	20414672
+chr8	123567489	123568730
+chr8	20690916	20707927
+chr8	20026678	20028442
+chr8	23094430	23096804
+chr8	15518786	15521117
+chr8	20415237	20426499
+chr8	20348879	20352973
+chr8	20124703	20135310
+chr8	20322407	20323195
+chr8	20710569	20711926
+chr8	20119951	20124094
+chr8	19926961	19936891
+chr8	20688029	20688503
+chr8	20635506	20640770
+chr8	19697279	19711741
+chr8	20653638	20670423
+chr8	20432980	20442727
+chr8	123542674	123544268
+chr8	20272587	20304081
+chr8	55112933	55124672
+chr8	20628957	20634183
+chr8	20811277	20835155
+chr8	20327105	20348063
+chr8	20358921	20399684
+chr8	20428997	20432208
+chr8	20119222	20119824
+chr8	20534489	20541206
+chr8	20570366	20628202
+chr8	19751688	19754146
+chr8	20265183	20269007
+chr8	20062360	20062381
+chr8	19789587	19792874
+chr8	55361851	55365675
+chr8	20068168	20073790
+chr8	20066904	20068123
+chr8	123544585	123546137
+chr8	20152642	20156368
+chr8	123539730	123539879
+chr8	19715034	19721099
+chr8	20312042	20315103
+chr8	123554758	123555015
+chr8	19681132	19684756
+chr8	14305741	14308369
+chr8	20534339	20534342
+chr8	20022728	20023668
+chr8	20033974	20044377
+chr8	20563416	20563632
+chr8	19691377	19692371
+chr8	71840086	71840699
+chr8	20017164	20019193
+chr8	20674137	20686766
+chr8	19801145	19802211
+chr8	20151869	20152461
+chr9	24540850	24543161
+chr9	13826077	13828641
+chr9	121040718	121043408
+chr9	3257636	3260113
+chr9	124255276	124259014
+chr9	2999001	3039419
+chr9	35304216	35306651
+chr9	69098573	69101274
+chr9	80956734	80958661
+chr9	56222572	56224955
+chr9	123460769	123463292
+chr9	123923333	123927203
+chr9	57074846	57077403
+chr9	70622071	70624471
+chrM	1	16299
+chrX	66493813	66495424
+chrX	170859260	170860477
+chrX	94885885	94886140
+chrX	170863437	170864018
+chrX	91841304	91844066
+chrX	94880959	94881406
+chrX	135041381	135044770
+chrX	94890211	94890326
+chrX	170861113	170861516
+chrX	169985134	170023444
+chrX	112369696	112372262
+chrX	94902538	94903991
+chrX	170879924	170882299
+chrX	94912627	94916014
+chrX	170854230	170858346
+chrX	76597457	76600136
+chrX	94907642	94908233
+chrX	170732207	170739180
+chrX	170840190	170853863
+chrX	170757171	170759511
+chrX	170830178	170834176
+chrX	143482005	143484125
+chrX	135051996	135055944
+chrX	170808829	170820055
+chrX	170741375	170743177
+chrX	170671790	170674598
+chrX	126770204	126772565
+chrX	117087776	117090043
+chrY	139572	147435
+chrY	90810927	90814974
+chrY	11856804	11859498
+chrY	90762580	90802093
+chrY	90802573	90810712
+chrY	90759628	90760408
+chrY	90733806	90745852
+chrY	257193	264671
diff --git a/resources/cluster_biowulf.yaml b/resources/cluster_biowulf.yaml
index eaa4d09..9711767 100644
--- a/resources/cluster_biowulf.yaml
+++ b/resources/cluster_biowulf.yaml
@@ -48,14 +48,28 @@ gopeaks_broad:
 ###################################################################
 findMotif:
     mem: 10g
+    time: 02-00:00:00
     threads: 6
 ###################################################################
 rose:
-    mem: 32g
+    mem: 64g
     threads: 2
-    time: 00-06:00:00
+    time: 00-12:00:00
 ###################################################################
 go_enrichment:
     time: 02-00:00:00
     mem: 10g
-###################################################################
\ No newline at end of file
+###################################################################
+deeptools_bw:
+    mem: 30g
+    time: 00-10:00:00
+###################################################################
+deeptools_mat:
+    mem: 30g
+    threads: 16
+    time: 01-00:00:00
+###################################################################
+deeptools_heatmap:
+    mem: 30g
+    time: 01-00:00:00
+###################################################################
diff --git a/resources/cluster_rhel8.yaml b/resources/cluster_rhel8.yaml
deleted file mode 100644
index ea66fbf..0000000
--- a/resources/cluster_rhel8.yaml
+++ /dev/null
@@ -1,61 +0,0 @@
-# cluster configuration
-###################################################################
-__default__:
-    gres: lscratch:96
-    mem: 40g
-    partition: rhel8
-    time: 00-02:00:00
-    threads: 2
-    name: "{rule}.{wildcards}"
-    output: "logs/{rule}.${{SLURM_JOBID}}.%j.{wildcards}.out"
-    error: "logs/{rule}.${{SLURM_JOBID}}.%j.{wildcards}.err"
-###################################################################
-align:
-    mem: 200g
-    time: 00-12:00:00
-    threads: 56
-###################################################################
-qc_fastq_screen_validator:
-    mem: 20g
-    threads: 4
-###################################################################
-create_reference:
-    mem: 200g
-    time: 00-12:00:00
-    threads: 32
-###################################################################
-bam2bg:
-    mem: 30g
-    time: 00-1:00:00
-    threads: 4
-###################################################################
-filter:
-    mem: 100g
-    time: 00-12:00:00
-###################################################################
-trim:
-    mem: 200g
-    time: 00-12:00:00
-    threads: 56
-###################################################################
-gopeaks_narrow:
-    mem: 75g
-    threads: 8
-###################################################################
-gopeaks_broad:
-    mem: 75g
-    threads: 8
-###################################################################
-findMotif:
-    mem: 10g
-    threads: 6
-###################################################################
-rose:
-    mem: 32g
-    threads: 2
-    time: 00-06:00:00
-###################################################################
-go_enrichment:
-    time: 02-00:00:00
-    mem: 10g
-###################################################################
\ No newline at end of file
diff --git a/resources/tools_biowulf.yaml b/resources/tools_biowulf.yaml
index adfb54d..4955a67 100644
--- a/resources/tools_biowulf.yaml
+++ b/resources/tools_biowulf.yaml
@@ -1,20 +1,21 @@
-bedtools: "bedtools/2.30.0"
-bedops: "bedops/2.4.40"
-bowtie2: "bowtie/2-2.4.2"
-cutadapt: "cutadapt/1.18"
-fastqc: "fastqc/0.11.9"
-fastq_screen: "fastq_screen/0.15.2"
-fastxtoolkit: "fastxtoolkit/0.0.14"
-homer: "homer/4.11.1"
-macs2: "macs/2.2.7.1"
-multiqc: "multiqc/1.14"
-perl: "perl/5.34"
-picard: "picard/2.26.9"
-python3: "python/3.7"
-R: "R/4.2.2"
-rose: "ROSE/1.3.1"
-samtools: "samtools/1.15"
-seacr: "seacr/1.4-beta.2"
-ucsc: "ucsc/407"
-gopeaks: "/data/CCBR_Pipeliner/Pipelines/gopeaks/gopeaks"
-fastq_val: "/data/CCBR_Pipeliner/iCLIP/bin/fastQValidator"
\ No newline at end of file
+bedtools: "bedtools/2.30.0"
+bedops: "bedops/2.4.41"
+bowtie2: "bowtie/2-2.4.5"
+cutadapt: "cutadapt/4.0"
+deeptools: "deeptools/3.5.1"
+fastqc: "fastqc/0.11.9"
+fastq_screen: "fastq_screen/0.15.2"
+fastxtoolkit: "fastxtoolkit/0.0.14"
+homer: "homer/4.11.1"
+macs2: "macs/2.2.7.1"
+multiqc: "multiqc/1.14"
+perl: "perl/5.34"
+picard: "picard/2.27.3"
+python3: "python/3.9"
+R: "R/4.2.2"
+rose: "ROSE/1.3.1"
+samtools: "samtools/1.15"
+seacr: "SEACR/1.4-beta.2"
+ucsc: "ucsc/445"
+gopeaks: "/data/CCBR_Pipeliner/Pipelines/gopeaks/gopeaks"
+fastq_val: "/data/CCBR_Pipeliner/bin/fastQValidator"
\ No newline at end of file
diff --git a/resources/tools_rhel8.yaml b/resources/tools_rhel8.yaml
deleted file mode 100644
index 2f7e023..0000000
--- a/resources/tools_rhel8.yaml
+++ /dev/null
@@ -1,20 +0,0 @@
-bedtools: "bedtools/2.30.0"
-bedops: "bedops/2.4.41"
-bowtie2: "bowtie/2-2.4.5"
-cutadapt: "cutadapt/4.0"
-fastqc: "fastqc/0.11.9"
-fastq_screen: "fastq_screen/0.15.2"
-fastxtoolkit: "fastxtoolkit/0.0.14"
-homer: "homer/4.11.1"
-macs2: "macs/2.2.7.1"
-multiqc: "multiqc/1.14"
-perl: "perl/5.34"
-picard: "picard/2.27.3"
-python3: "python/3.9"
-R: "R/4.2.2"
-rose: "ROSE/1.3.1"
-samtools: "samtools/1.15"
-seacr: "SEACR/1.4-beta.2"
-ucsc: "ucsc/445"
-gopeaks: "/data/CCBR_Pipeliner/Pipelines/gopeaks/gopeaks"
-fastq_val: "/data/CCBR_Pipeliner/iCLIP/bin/fastQValidator"
\ No newline at end of file
diff --git a/workflow/Snakefile b/workflow/Snakefile
index 02370e9..0167e70 100644
--- a/workflow/Snakefile
+++ b/workflow/Snakefile
@@ -14,6 +14,29 @@ def run_library_norm(wildcards):
         files.extend(lib)
     return files
 
+def run_deeptools_bw(wildcards):
+    files=[]
+    b1=expand(join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bam"),replicate=REPLICATES,dupstatus=DUPSTATUS)
+    files.extend(b1)
+    b2=expand(join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bam.bai"),replicate=REPLICATES,dupstatus=DUPSTATUS)
+    files.extend(b2)
+    b3=expand(join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bigwig"),replicate=REPLICATES,dupstatus=DUPSTATUS)
+    files.extend(b3)
+    return files
+
+def run_deeptools_heatmap(wildcards):
+    files=[]
+    GROUP = [a+b for a in TREATMENTS+["all_samples"] for b in ["", ".prot"]]
+    p1=expand(join(RESULTSDIR,"deeptools","{group}.{dupstatus}.metagene_heatmap.pdf"),group=GROUP,dupstatus=DUPSTATUS)
+    files.extend(p1)
+    p2=expand(join(RESULTSDIR,"deeptools","{group}.{dupstatus}.TSS_heatmap.pdf"),group=GROUP,dupstatus=DUPSTATUS)
+    files.extend(p2)
+    p3=expand(join(RESULTSDIR,"deeptools","{group}.{dupstatus}.metagene_profile.pdf"),group=GROUP,dupstatus=DUPSTATUS)
+    files.extend(p3)
+    p4=expand(join(RESULTSDIR,"deeptools","{group}.{dupstatus}.TSS_profile.pdf"),group=GROUP,dupstatus=DUPSTATUS)
+    files.extend(p4)
+    return files
+
 def run_macs2(wildcards):
     files=[]
     if "macs2_narrow" in PEAKTYPE:
@@ -60,13 +83,14 @@ def run_qc(wildcards):
     files=[]
     if ("gopeaks_narrow" in PEAKTYPE) or ("gopeaks_broad" in PEAKTYPE):
         q=expand(join(RESULTSDIR,'qc', 'multiqc_report_{qthresholds}.html'),qthresholds=QTRESHOLDS)
+        files.extend(q)
     else:
         q=join(RESULTSDIR,'qc', 'multiqc_report.html')
-    files.extend(q)
+        files.append(q)
 
     if ("SPIKEIN" == NORM_METHOD) and ("ecoli" == spikein_genome):
         html=join(RESULTSDIR,'qc',"spikein_qc_report.html"),
-        files.extend(html)
+        files.append(html)
     return files
 
 def run_contrasts(wildcards):
@@ -167,30 +191,36 @@ rule all:
         # manifests
         unpack(run_pipe_prep),
         
-        # ALIGN / create_library_norm_scales
-        unpack(run_library_norm),
+        # ALIGN / deeptools_bw
+        unpack(run_deeptools_bw),
 
-        # ALIGN / alignstats
-        expand(join(RESULTSDIR,"alignment_stats","{replicate}.alignment_stats.yaml"),replicate=REPLICATES),
+        # ALIGN / deeptools_heatmap
+        unpack(run_deeptools_heatmap),
+
+        # # ALIGN / create_library_norm_scales
+        # unpack(run_library_norm),
+
+        # # ALIGN / alignstats
+        # expand(join(RESULTSDIR,"alignment_stats","{replicate}.alignment_stats.yaml"),replicate=REPLICATES),
         
-        # ALIGN / gather_alignstats
-        join(RESULTSDIR,"alignment_stats","alignment_stats.tsv"),
+        # # ALIGN / gather_alignstats
+        # join(RESULTSDIR,"alignment_stats","alignment_stats.tsv"),
 
-        # PEAKCALLS / macs2_narrow, macs2_broad, seacr_stringent, seacr_relaxed, gopeaks_narrow, gopeaks_broad
-        unpack(run_macs2),
-        unpack(run_seacr),
-        unpack(run_gopeaks),
+        # # PEAKCALLS / macs2_narrow, macs2_broad, seacr_stringent, seacr_relaxed, gopeaks_narrow, gopeaks_broad
+        # unpack(run_macs2),
+        # unpack(run_seacr),
+        # unpack(run_gopeaks),
 
-        # QC
-        unpack(run_qc),
+        # # QC
+        # unpack(run_qc),
 
-        # DIFF / create_contrast_data_files
-        unpack(run_contrasts),
+        # # DIFF / create_contrast_data_files
+        # unpack(run_contrasts),
         
-        # ANNOTATION / findMotif, rose, create_contrast_peakcaller_files, go_enrichment
-        unpack(get_motifs),
-        unpack(get_rose),
-        unpack(get_enrichment)
+        # # ANNOTATION / findMotif, rose, create_contrast_peakcaller_files, go_enrichment
+        # unpack(get_motifs),
+        # unpack(get_rose),
+        # unpack(get_enrichment)
 """
         ##########################################
         ### intermediate files
@@ -229,4 +259,13 @@ rule all:
         expand(join(RESULTSDIR,"fragments","{replicate}.{dupstatus}.fragments.bed"),replicate=REPLICATES,dupstatus=DUPSTATUS),
         expand(join(RESULTSDIR,"bedgraph","{replicate}.{dupstatus}.bedgraph"),replicate=REPLICATES,dupstatus=DUPSTATUS),
         expand(join(RESULTSDIR,"bigwig","{replicate}.{dupstatus}.bigwig"),replicate=REPLICATES,dupstatus=DUPSTATUS),
+
+        # ALIGN / deeptools_heatmap
+        expand(join(RESULTSDIR,"deeptools","clean", "{sample}.{dupstatus}.deeptools_prep"), sample=TREATMENTS, dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "{sample}.prot.{dupstatus}.deeptools_prep"), sample=TREATMENTS, dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "all_samples.{dupstatus}.deeptools_prep"), dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "all_samples.prot.{dupstatus}.deeptools_prep"), dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.metagene.mat.gz"),group=[a+b for a in TREATMENTS+["all_samples"] for b in ["", ".prot"]],dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.TSS.mat.gz"),group=[a+b for a in TREATMENTS+["all_samples"] for b in ["", ".prot"]],dupstatus=DUPSTATUS),
+        expand(join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.geneinfo.bed"),group=[a+b for a in TREATMENTS+["all_samples"] for b in ["", ".prot"]],dupstatus=DUPSTATUS),
 """
\ No newline at end of file
diff --git a/workflow/rules/align.smk b/workflow/rules/align.smk
index 6017f27..7a0b8c9 100644
--- a/workflow/rules/align.smk
+++ b/workflow/rules/align.smk
@@ -367,4 +367,105 @@ rule bam2bg:
 
         # add to YAML
         echo "spikein_scaling_factor=$spikein_scale" > {output.sf_yaml}
+        """
+
+rule deeptools_bw:
+    input:
+        bam = join(RESULTSDIR,"bam","{replicate}.{dupstatus}.bam"),
+        genome_len = join(BOWTIE2_INDEX,"genome.len")
+    output:
+        clean_bam = join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bam"),
+        clean_bai = join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bam.bai"),
+        bw = join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bigwig"),
+    envmodules:
+        TOOLS["samtools"],
+        TOOLS["deeptools"],
+    shell:
+        """
+        genome_size=`cat {input.genome_len} | awk '{{ sum+=$2 }} END{{ print sum }}'`
+        samtools view -b -@4 {input.bam} chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr20 chr21 chr22 chrX chrY | samtools sort -@4 -o {output.clean_bam}
+        samtools index {output.clean_bam}
+        bamCoverage --bam {output.clean_bam} -o {output.bw} --binSize 25 --smoothLength 75 --numberOfProcessors 32 --normalizeUsing RPGC --effectiveGenomeSize $genome_size --centerReads
+        """
+
+rule deeptools_prep:
+    input:
+        bw = expand(join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bigwig"), replicate=REPLICATES,dupstatus=DUPSTATUS),
+    output:
+        deeptools_prep = temp(expand(join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.deeptools_prep"),group=[a+b for a in TREATMENTS+["all_samples"] for b in ["", ".prot"]],dupstatus=DUPSTATUS)),
+    run:
+        for dupstatus in DUPSTATUS:
+            for i in ["","prot."]:
+                for item in TREATMENT_CONTROL_LIST:
+                    labels = item.split('_vs_')
+                    treatment, control = labels
+                    bws = [join(RESULTSDIR,"deeptools","clean","{}.{}.clean.bigwig".format(item, dupstatus)) for item in labels]
+                    f=open(join(RESULTSDIR,"deeptools","clean","{}.{}{}.deeptools_prep".format(treatment, i, dupstatus) ),'w')
+                    f.write("{}\n".format(dupstatus))
+                    f.write("{}\n".format(" ".join(bws)))
+                    f.write("{}\n".format(" ".join(labels)))
+                    f.close()
+
+        for dupstatus in DUPSTATUS:
+            labels = []
+            for c in CONTROL_to_TREAT_DICT:
+                labels += CONTROL_to_TREAT_DICT[c]
+                labels.append(c)
+            bws = [join(RESULTSDIR,"deeptools","clean","{}.{}.clean.bigwig".format(item, dupstatus)) for item in labels]
+
+            for i in ["","prot."]:
+                f_all=open(join(RESULTSDIR,"deeptools","clean","all_samples.{}{}.deeptools_prep".format(i, dupstatus)),'w')
+                f_all.write("all_samples\n")
+                f_all.write("{}\n".format(" ".join(bws)))
+                f_all.write("{}\n".format(" ".join(labels)))
+                f_all.close()
+
+rule deeptools_mat:
+    input:
+        deeptools_prep = join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.deeptools_prep"),
+        bw = expand(join(RESULTSDIR,"deeptools","clean","{replicate}.{dupstatus}.clean.bigwig"), replicate=REPLICATES,dupstatus=DUPSTATUS),
+    output:
+        metamat=temp(join(RESULTSDIR,"deeptools","clean", "{group}.{dupstatus}.metagene.mat.gz")),
+        TSSmat=temp(join(RESULTSDIR,"deeptools","clean","{group}.{dupstatus}.TSS.mat.gz")),
+        bed=temp(join(RESULTSDIR,"deeptools","clean","{group}.{dupstatus}.geneinfo.bed")),
+    params:
+        prebed="/data/CCBR_Pipeliner/db/PipeDB/Indices/hg38_basic/geneinfo.bed",
+        pythonver=TOOLS["python3"],
+        deeptoolsver=TOOLS["deeptools"],
+    threads:
+        getthreads("deeptools_mat"),
+    run:
+        import re
+        commoncmd="module load {params.deeptoolsver}; module load {params.pythonver};"
+        listfile=list(map(lambda z:z.strip().split(),open(input.deeptools_prep,'r').readlines()))
+        ext=listfile[0][0]
+        bws=listfile[1]
+        labels=listfile[2]
+        if "prot" in wildcards.group:
+            cmd1="grep --line-buffered 'protein_coding' "+ params.prebed  +" | awk -v OFS='\t' -F'\t' '{{print $1, $2, $3, $5, \".\", $4}}' > "+output.bed
+        else:
+            cmd1="awk -v OFS='\t' -F'\t' '{{print $1, $2, $3, $5, \".\", $4}}' "+params.prebed+" > "+output.bed
+        cmd2="computeMatrix scale-regions -S "+" ".join(bws)+" -R "+output.bed+" -p 16 --upstream 1000 --regionBodyLength 2000 --downstream 1000 --skipZeros -o "+output.metamat+" --samplesLabel "+" ".join(labels)
+        cmd3="computeMatrix reference-point -S "+" ".join(bws)+" -R "+output.bed+" -p 16 --referencePoint TSS --upstream 3000 --downstream 3000 --skipZeros -o "+output.TSSmat+" --samplesLabel "+" ".join(labels)
+        shell(commoncmd+cmd1)
+        shell(commoncmd+cmd2)
+        shell(commoncmd+cmd3)
+
+rule deeptools_heatmap:
+    input:
+        metamat=rules.deeptools_mat.output.metamat,
+        TSSmat=rules.deeptools_mat.output.TSSmat,
+    output:
+        metaheat=join(RESULTSDIR,"deeptools","{group}.{dupstatus}.metagene_heatmap.pdf"),
+        TSSheat=join(RESULTSDIR,"deeptools","{group}.{dupstatus}.TSS_heatmap.pdf"),
+        metaline=join(RESULTSDIR,"deeptools","{group}.{dupstatus}.metagene_profile.pdf"),
+        TSSline=join(RESULTSDIR,"deeptools","{group}.{dupstatus}.TSS_profile.pdf"),
+    envmodules:
+        TOOLS["deeptools"],
+    shell:
+        """
+        plotHeatmap -m {input.metamat} -out {output.metaheat} --colorMap 'PuOr_r' --zMin auto --zMax auto --yAxisLabel 'average RPGC' --regionsLabel 'genes' --legendLocation 'none'
+        plotHeatmap -m {input.TSSmat} -out {output.TSSheat} --colorMap 'RdBu_r' --zMin auto --zMax auto --yAxisLabel 'average RPGC' --regionsLabel 'genes' --legendLocation 'none'
+        plotProfile -m {input.metamat} -out {output.metaline} --plotHeight 15 --plotWidth 15 --perGroup --yAxisLabel 'average RPGC' --plotType 'se' --legendLocation upper-right
+        plotProfile -m {input.TSSmat} -out {output.TSSline} --plotHeight 15 --plotWidth 15 --perGroup --yAxisLabel 'average RPGC' --plotType 'se' --legendLocation upper-left
         """
\ No newline at end of file
diff --git a/workflow/rules/init.smk b/workflow/rules/init.smk
index 441396f..6dbde8b 100644
--- a/workflow/rules/init.smk
+++ b/workflow/rules/init.smk
@@ -247,6 +247,13 @@ if config["run_contrasts"] == "Y":
         if os.path.exists(rg_file): os.remove(rg_file)
         # once file is removed it will be recreated by rule create_replicate_sample_table
 
+# create CONTROL : TREATMENT dictionary
+CONTROL_to_TREAT_DICT={}
+for t in TREAT_to_CONTRL_DICT:
+    c=TREAT_to_CONTRL_DICT[t]
+    if c not in CONTROL_to_TREAT_DICT:
+        CONTROL_to_TREAT_DICT[c]=[]
+    CONTROL_to_TREAT_DICT[c].append(t)
 
 #########################################################
 # READ IN TOOLS REQUIRED BY PIPELINE