diff --git a/.gitignore b/.gitignore
index f6d6d95..c62a4f9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -6,6 +6,8 @@ site/
**/*.swp
**/test.*
+*/._*
+*/*/._*
*DS_Store
*RData
*Rhistory
diff --git a/README.md b/README.md
index 50e3546..9388566 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,11 @@
-![Issues](https://img.shields.io/github/issues/CCBR/CARLISLE)
+# Cut And Run anaLysIS pipeLinE [CARLISLE]
-# Cut And Run anaLysIS pipeLinE or CARLISLE
+
+
+
+ [![GitHub releases](https://img.shields.io/github/release/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/releases) [![GitHub issues](https://img.shields.io/github/issues/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/issues) [![GitHub license](https://img.shields.io/github/license/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/blob/master/LICENSE)
+
+
This snakemake pipeline is built to run on [Biowulf](https://hpc.nih.gov/).
diff --git a/docs/img/._CUTandRUN_Workflow.jpeg b/docs/img/._CUTandRUN_Workflow.jpeg
new file mode 100644
index 0000000..305ebb5
Binary files /dev/null and b/docs/img/._CUTandRUN_Workflow.jpeg differ
diff --git a/docs/index.md b/docs/index.md
index 012032e..89f470f 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -1 +1,3 @@
-The CARLISLE pipeline was developed in support of NIH [Dr Vassiliki Saloura's Laboratory](https://ccr.cancer.gov/staff-directory/vassiliki-saloura). It has been developed and tested solely on NIH [HPC Biowulf](https://hpc.nih.gov/).
\ No newline at end of file
+The CARLISLE pipeline was developed in support of NIH [Dr Vassiliki Saloura's Laboratory](https://ccr.cancer.gov/staff-directory/vassiliki-saloura) and [Dr Javed Khan's Laboratory](https://ccr.cancer.gov/staff-directory/javed-khan/lab). It has been developed and tested solely on NIH [HPC Biowulf](https://hpc.nih.gov/).
+
+![Image title](https://github.com/CCBR/CARLISLE/blob/dev/resources/img/CUTandRUN_Workflow.jpeg?raw=true)
diff --git a/resources/cluster.yaml b/resources/cluster.yaml
index 2322eff..06385f2 100644
--- a/resources/cluster.yaml
+++ b/resources/cluster.yaml
@@ -47,7 +47,7 @@ findMotif:
threads: 6
###################################################################
rose:
- mem: 10g
+ mem: 32g
threads: 2
time: 00-06:00:00
###################################################################
diff --git a/resources/img/CUTandRUN_Workflow.jpeg b/resources/img/CUTandRUN_Workflow.jpeg
new file mode 100644
index 0000000..c080358
Binary files /dev/null and b/resources/img/CUTandRUN_Workflow.jpeg differ