From 92edf45099e04ce70aa620b428f5bf676bf1668d Mon Sep 17 00:00:00 2001 From: slsevilla Date: Wed, 25 Oct 2023 19:19:00 -0400 Subject: [PATCH 1/3] fix: #100 --- resources/tools_biowulf.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/resources/tools_biowulf.yaml b/resources/tools_biowulf.yaml index 4955a67..4e3413d 100644 --- a/resources/tools_biowulf.yaml +++ b/resources/tools_biowulf.yaml @@ -17,5 +17,5 @@ rose: "ROSE/1.3.1" samtools: "samtools/1.15" seacr: "SEACR/1.4-beta.2" ucsc: "ucsc/445" -gopeaks: "/data/CCBR_Pipeliner/Pipelines/gopeaks/gopeaks" +gopeaks: "/data/CCBR_Pipeliner/bin/GoPeaks/gopeaks" fastq_val: "/data/CCBR_Pipeliner/bin/fastQValidator" \ No newline at end of file From 0fb95c25b079898517eaa686f102243ad06753c3 Mon Sep 17 00:00:00 2001 From: slsevilla Date: Mon, 8 Jan 2024 18:00:13 -0500 Subject: [PATCH 2/3] docs: adding citation file --- CITATION.cff | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..9ea2218 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,21 @@ +cff-version: 1.2.0 +message: "If you use CARLISLE, please cite it as below." +authors: +- family-names: "Sevilla" + given-names: "Samantha" + orcid: "https://orcid.org/0000-0002-8734-9875" +- family-names: "Koparde" + given-names: "Vishal" + orcid: "https://orcid.org/0000-0001-8978-8495" +- family-names: "Chou" + given-names: "Hsien-chao" + orcid: "https://orcid.org/0000-0002-4870-9663" +- family-names: "Kim" + given-names: "Sohyoung" +- family-names: "Hu" + given-names: "Yue" +- family-names: "Saloura" + given-names: "Vassiliki" +title: "Cut And Run anaLysIS pipeLinE (CARLISLE)" +version: 2.4.1 +url: "https://github.com/CCBR/CARLISLE" \ No newline at end of file From 463b23d6e906e4017a9d9b1c3ad5996df8fc649d Mon Sep 17 00:00:00 2001 From: slsevilla Date: Mon, 8 Jan 2024 18:01:17 -0500 Subject: [PATCH 3/3] docs: creating version docs --- VERSION | 1 + 1 file changed, 1 insertion(+) create mode 100644 VERSION diff --git a/VERSION b/VERSION new file mode 100644 index 0000000..005119b --- /dev/null +++ b/VERSION @@ -0,0 +1 @@ +2.4.1