Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

star1p slurm job failing even though rule succeeds #127

Open
kelly-sovacool opened this issue Oct 28, 2024 · 0 comments · May be fixed by #130
Open

star1p slurm job failing even though rule succeeds #127

kelly-sovacool opened this issue Oct 28, 2024 · 0 comments · May be fixed by #130
Labels
bug Something isn't working HighPriority

Comments

@kelly-sovacool
Copy link
Member

kelly-sovacool commented Oct 28, 2024

in @wilfriedguiblet's output directory: /data/CCBR/charlie_test_wil/charlie2

from snakemake log:

Error executing rule star1p on cluster (jobid: 8, external: 39292146, jobscript: /vf/users/CCBR/charlie_test_wil/charlie2/.snakemake/tmp.cw25d5ms/snakejob.star1p.8.sh). For error details see the cluster log and the log files of the involved rule(s).

end of the rule's slurm log (logs/39273613.39292146.star1p.sample=GI1_T.err):

[Fri Oct 25 15:21:07 2024]
Finished job 0.
1 of 1 steps (100%) done

So the rule succeeded but the overall slurm job failed??

@kopardev I think this is a separate issue from #123. It did not try to re-run star1p.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working HighPriority
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant