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"logan init" didn't work -- fix README install instructions #62

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HYan-lei opened this issue Aug 6, 2024 · 2 comments
Open

"logan init" didn't work -- fix README install instructions #62

HYan-lei opened this issue Aug 6, 2024 · 2 comments
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documentation Improvements or additions to documentation

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@HYan-lei
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HYan-lei commented Aug 6, 2024

Hi, I run the following command, and got the "bash: logan: command not found" wrong message. Does Logan work now? Thanks.

sinteractive --mem=2g --cpus-per-task=2 --gres=lscratch:200
module load ccbrpipeliner
logan init

@kelly-sovacool
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Hi @HYan-lei, LOGAN is not yet available in ccbrpipeliner, as it is still in development. We are currently targeting LOGAN to be released with ccbrpipeliner/8.

Our apologies that the README has incorrect information, we will fix this.

@kelly-sovacool kelly-sovacool changed the title "logan init" didn't work "logan init" didn't work -- fix README install instructions Aug 16, 2024
@kelly-sovacool kelly-sovacool added the documentation Improvements or additions to documentation label Aug 16, 2024
@kelly-sovacool
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kelly-sovacool commented Aug 16, 2024

@dnousome These are the offending lines of the readme that need changed:

LOGAN/README.md

Lines 22 to 29 in b799370

LOGAN is installed on the Biowulf in the ccbrpipeliner module.
Please clone this repository to your local filesystem using the following command:
```bash
# start an interactive node
sinteractive --mem=2g --cpus-per-task=2 --gres=lscratch:200
# load the ccbrpipeliener module
module load ccbrpipeliner
```

We could also add a disclaimer/warning toward the top of the readme:

🚧 **This project is under active development. It is not yet ready for production use.** 🚧

@dnousome dnousome mentioned this issue Aug 16, 2024
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