requirements.txt

backcall==0.1.0
certifi==2018.4.16
chardet==3.0.4
click==6.7
cycler==0.10.0
decorator==4.3.0
fields==5.0.0
idna==2.7
intervene==0.6.4
ipython==6.4.0
ipython-genutils==0.2.0
jedi==0.12.1
kiwisolver==1.0.1
matplotlib==2.2.2
numpy==1.14.5
pandas==0.23.1
parso==0.3.0
pexpect==4.6.0
pickleshare==0.7.4
pkg-resources==0.0.0
pkginfo==1.4.2
prompt-toolkit==1.0.15
ptyprocess==0.6.0
pybedtools==0.7.10
Pygments==2.2.0
pyparsing==2.2.0
pysam==0.14.1
python-dateutil==2.7.3
pytz==2018.5
PyUpSet==0.1.1.post7
PyVCF==0.6.8
PyYAML==3.12
requests==2.19.1
requests-toolbelt==0.8.0
scikit-allel==1.1.10
scipy==1.1.0
seaborn==0.8.1
simple-settings==0.13.0
simplegeneric==0.8.1
six==1.11.0
Tabby==0.4.0
tqdm==4.23.4
traitlets==4.3.2
twine==1.11.0
UpSetPlot==0.1
urllib3==1.23
-e git+git@github.com:COMBAT-TB/tsv_validate_vcf.git@158e486e941d47a98e7540569966638316524d56#egg=vcf_snp_utils
wcwidth==0.1.7
yml==0.0.1