References for SP paper

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Just saw this, so opening an issue to log it.

Nature 4.0: A networked sensor system for integrated biodiversity monitoring
https://onlinelibrary.wiley.com/doi/10.1111/gcb.17056?af=R

Chu et al.: AmeriFlux BASE data pipeline to support network growth and data sharing, Sci Data, 10, 614, 2023.
https://www.nature.com/articles/s41597-023-02531-2

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More data workflows

Stoudt, S., Vásquez, V. N., and Martinez, C. C.: Principles for data analysis workflows, PLoS Comput. Biol., 17, e1008770, 2021. http://dx.doi.org/10.1371/journal.pcbi.1008770

Liu, J., Cichota, R., Langer, S., Burgueño, E., and Michel, A.: Data pipeline for managing field experiments, MethodsX, 10, 102031, 2023. http://dx.doi.org/10.1016/j.mex.2023.102031

Open science

Lowndes, J. S. S., Best, B. D., Scarborough, C., Afflerbach, J. C., Frazier, M. R., O’Hara, C. C., Jiang, N., and Halpern, B. S.: Our path to better science in less time using open data science tools, Nat Ecol Evol, 1, 160, 2017. http://dx.doi.org/10.1038/s41559-017-0160

Wilkinson et al.: The FAIR Guiding Principles for scientific data management and stewardship, Sci Data, 3, 160018, 2016. http://dx.doi.org/10.1038/sdata.2016.18

Models-data

Dietze, M. C., LeBauer, D. S., and Kooper, R.: On improving the communication between models and data, Plant Cell Environ., 36, 1575–1585, 2012. http://dx.doi.org/10.1111/pce.12043

Fer et al.: Beyond ecosystem modeling: A roadmap to community cyberinfrastructure for ecological data-model integration, Glob. Chang. Biol., 27, 13–26, 2021. http://dx.doi.org/10.1111/gcb.15409

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Importance of good data management etc.:

Improper data practices erode the quality of global ecological databases and impede the progress of ecological research
https://onlinelibrary.wiley.com/doi/10.1111/gcb.17116?af=R

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Tools

Ram, K.: Git can facilitate greater reproducibility and increased transparency in science, Source Code Biol. Med., 8, 7, 2013. http://dx.doi.org/10.1186/1751-0473-8-7

Braga, P. H. P., Hébert, K., Hudgins, E. J., Scott, E. R., Edwards, B. P. M., Sánchez Reyes, L. L., Grainger, M. J., Foroughirad, V., Hillemann, F., Binley, A. D., Brookson, C. B., Gaynor, K. M., Shafiei Sabet, S., Güncan, A., Weierbach, H., Gomes, D. G. E., and Crystal-Ornelas, R.: Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution, Methods Ecol. Evol., 14, 1364–1380, 2023. http://dx.doi.org/10.1111/2041-210x.14108

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Flags in other model workflows

Jung, M., Nelson, J., Migliavacca, M., El-Madany, T., Papale, D., Reichstein, M., Walther, S., and Wutzler, T.: Technical note: Flagging inconsistencies in flux tower data, Biogeosciences, 21, 1827–1846, 2024.
https://bg.copernicus.org/articles/21/1827/2024/

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Networking the forest infrastructure towards near real-time monitoring – A white paper
https://www.sciencedirect.com/science/article/pii/S0048969723007830

The Integrated Carbon Observation System in Europe
https://journals.ametsoc.org/view/journals/bams/103/3/BAMS-D-19-0364.1.xml

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So we don't lose track of this, might want to mention/cite: https://www.licor.com/env/products/li-cor-cloud/