genome_location_schema.json

{
  "id": "https://w3id.org/dats/schema/genome_location_schema.json",
  "$schema": "http://json-schema.org/draft-04/schema#",
  "title": "GenomeLocation",
  "description": "Location of a sequence object used both by display, and by jbrowse to render a browser. The addition to DATS uses the genomeLocation as defined by AGR [https://github.com/alliance-genome/agr_schemas/blob/develop/gene/genomeLocation.json]",
  "type": "object",
  "properties": {
    "@context": {
      "description": "The JSON-LD context",
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "object"
        },
        {
          "type": "array"
        }
      ]
    },
    "@id": {
      "description": "The JSON-LD identifier",
      "type": "string", "format": "uri"
    },
    "@type": {
      "description": "The JSON-LD type",
      "type": "string", "enum": [ "GenomeLocation" ]},
    "assembly": {
      "type" : "string",
      "description" : "The assembly on which the position and chromosome are based."
    },
    "startPosition":{
      "type": "number",
      "description": "the start position of the location."
    },
    "endPosition":{
      "type": "number",
      "description": "the end position of the location."
    },
    "chromosome":{
      "type": "string",
      "description": "the chromosome of the genomic feature.  Note: whatever loaded here, will be used in JBrowse."
    },
    "strand":{
      "enum": ["+","-","."],
      "description": "strand of the genome location."
    }
  },
  "required": [ "assembly","chromosome" ]
}