Release Ap-Nimbus v2.0.0

[kwabenantim]

Summary

appredict-docker

• Update to Chaste 2024.1 and ApPredict 2024.1
• Upgrade base image to debian bullseye.
• Build appredict-chaste-libs:2.0.0 docker image.
• Build appredict-no-emulators:2.0.0 docker image.
• Build appredict-with-emulators:2.0.0 docker image.
• Release repository v2.0.0

ap-nimbus-app-manager

• Update to appredict-with-emulators:2.0.0 base image.
• Upgrade to Node 20.
• Build ap-nimbus-app-manager:2.0.0 docker image.
• Release repository v2.0.0

ap-nimbus-client

• Support Python 3.12
• Build ap-nimbus-client:2.0.0 docker image.
• User Acceptance Testing
• Release repository v2.0.0

ap-nimbus

• Update RtD documentation.
• Update submodules for appredict-docker, app-manager, and ap-nimbus client to v2.0.0.
• Release repository v2.0.0

[mirams]

Does this relate to #76 @kwabenantim , can we get latest release to work with numpy 2 ?

[kwabenantim]

Does this relate to #76 @kwabenantim , can we get latest release to work with numpy 2 ?

This resolves #76 by installing numpy>=1.24.4,<2.0. I don't think cellmlmanip currently supports numpy 2 though - I'll add an issue for it.

[kwabenantim]

It looks like the numpy 2 errors here are pint-related (hgrecco/pint#1974). Probably needs bumping up the pint version in cellmlmanip requirements.

==================================== ERRORS ====================================
__________________ ERROR collecting files/tests/test_forms.py __________________
client/files/tests/test_forms.py:8: in <module>
    from files.forms import CellmlModelForm
client/files/forms.py:5: in <module>
    from cellmlmanip import load_model
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/cellmlmanip/__init__.py:3: in <module>
    from .main import load_model  # noqa
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/cellmlmanip/main.py:2: in <module>
    from cellmlmanip.parser import Parser
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/cellmlmanip/parser.py:15: in <module>
    from cellmlmanip.model import SYMPY_SYMBOL_DELIMITER, Model
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/cellmlmanip/model.py:15: in <module>
    from cellmlmanip.units import UnitStore
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/cellmlmanip/units.py:13: in <module>
    import pint
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/pint/__init__.py:28: in <module>
    from .measurement import Measurement
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/pint/measurement.py:12: in <module>
    from .quantity import Quantity
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/pint/quantity.py:69: in <module>
    from .numpy_func import (
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/pint/numpy_func.py:875: in <module>
    implement_single_dimensionless_argument_func(func_str)
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/pint/numpy_func.py:864: in implement_single_dimensionless_argument_func
    func = getattr(np, func_str)
/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/numpy/__init__.py:410: in __getattr__
    raise AttributeError("module {!r} has no attribute "
E   AttributeError: module 'numpy' has no attribute 'cumproduct'. Did you mean: 'cumprod'?