Errors when running test cases

[jenniferagraham]

Need to run test cases to confirm that NEMO, FABM and XIOS are all compiled corrected.
Starting tests using the C1D_PAPA and AMM12 configurations, but receiving errors during runtime.

One appears to be mpi related. e.g.,

[i0030.cluster.local:01744] mca_base_component_repository_open: unable to open mca_btl_openib: /lib64/libibverbs.so.1: version `IBVERBS_1.8' not found (required by /gpfs/software/ada/openmpi/4.0.4/intel-ib-cefas/lib/openmpi/mca_btl_openib.so) (ignored)

Having tested on different nodes/queues, this seems to always occur, so isn't related to individual nodes, but this doesn't seem to stop the model from running....?

When the model runs, then find errors related to missing files for input for each test case, e.g.,

  ===>>> : E R R O R

          ===========

                     iom_open ~~~
 File ./init_PAPASTATION_m06d15.nc* not found

NB. These file errors are found in the ocean.output files, rather than the stdout from slurm.

Actions required:

1. Find out where the necessary input files are for test cases.
2. Check with hpc-admin, to see if they know a cause for the mpi errors (whether this is related to installation of mpi on Ada)

[jenniferagraham]

Necessary input files for standard NEMO test cases (e.g., AMM12) can be found here, and grabbed for use direct onto HPC, e.g.,

~/NEMO/NEMO4.0-FABM/cfgs/AMM12]$ wget "https://gws-access.jasmin.ac.uk/public/nemo/sette_inputs/r4.2.0/AMM12_v4.2.0.tar.gz"

Make sure to extract contents and link into the relevant run directory.