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runSimulations.xsd
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runSimulations.xsd
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<!--
Simulation conditions XML schema.
Author: Jonathan Karr, [email protected]
Affiliation: Covert Lab, Department of Bioengineering, Stanford University
Last updated: 1/9/2011
-->
<xs:schema
xmlns:xs="http://www.w3.org/2001/XMLSchema">
targetNamespace="http://covertlab.stanford.edu"
xmlns="http://covertlab.stanford.edu"
elementFormDefault="qualified">
<xs:element name="conditions" type="conditionsType"/>
<xs:complexType name="conditionsType">
<xs:sequence>
<xs:element name="firstName" type="xs:string" use="required"/>
<xs:element name="lastName" type="xs:string" use="required"/>
<xs:element name="email" type="xs:string" use="required"/>
<xs:element name="affiliation" type="xs:string" use="required"/>
<xs:element name="userName" type="xs:string"/>
<xs:element name="hostName" type="xs:string"/>
<xs:element name="ipAddress" type="xs:string"/>
<xs:element name="revision" type="xs:string"/>
<xs:element name="differencesFromRevision" type="xs:string"/>
<xs:element name="condition" type="conditionType" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="conditionType">
<xs:sequence>
<xs:element name="shortDescription" type="xs:string" use="required"/>
<xs:element name="longDescription" type="xs:string" use="required"/>
<xs:element name="replicates" type="xs:positiveInteger" default="1"/>
<xs:element name="options" type="optionsType"/>
<xs:element name="parameters" type="parametersType"/>
<xs:element name="perturbations" type="perturbationsType"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="optionsType">
<xs:sequence>
<xs:element name="option" type="optionType" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="parametersType">
<xs:sequence>
<xs:element name="parameter" type="parameterType" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="perturbationsType">
<xs:sequence>
<xs:element name="perturbation" type="perturbationType" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="optionType">
<xs:sequence>
<xs:element name="name" type="xs:string"/>
<xs:element name="state" type="xs:string"/>
<xs:element name="process" type="xs:string"/>
<xs:element name="value" type="xs:string"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="parameterType">
<xs:sequence>
<xs:element name="name" type="xs:string"/>
<xs:element name="index" type="xs:string"/>
<xs:element name="state" type="xs:string"/>
<xs:element name="process" type="xs:string"/>
<xs:element name="value" type="xs:string"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="perturbationType">
<xs:sequence>
<xs:element name="type" type="perturbationTypeType" use="required"/>
<xs:element name="component" type="xs:string" use="required"/>
<xs:element name="compartment" type="xs:string"/>
<xs:element name="initialTime" type="xs:double" default="0"/>
<xs:element name="finalTime" type="xs:double" default="INF"/>
<xs:element name="value" type="xs:double"/>
</xs:sequence>
</xs:complexType>
<xs:simpleType name="perturbationTypeType">
<xsd:restriction base="xsd:string">
<xsd:enumeration value="geneticKnockout"/>
<xsd:enumeration value="stimulus"/>
<xsd:enumeration value="media"/>
</xsd:restriction>
</xsd:simpleType>
</xs:schema>