check.yml

name: Checks

on:
  push:
  pull_request:

jobs:
  build:

    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ['3.10']
        os: [macos-latest, ubuntu-latest, windows-latest]
        deps: ["none", "all"]
    env:
      # Display must be available globally for linux to know where xvfb is
      DISPLAY: ":99.0"
      QT_SELECT: "qt6"
    timeout-minutes: 30

    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Setup xvfb (Linux)
      if: runner.os == 'Linux'
      run: |
        # Stuff copied wildly from several stackoverflow posts
        sudo apt-get install -y xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 libxcb-shape0 libglib2.0-0 libgl1-mesa-dev
        sudo apt-get install '^libxcb.*-dev' libx11-xcb-dev libglu1-mesa-dev libxrender-dev libxi-dev libxkbcommon-dev libxkbcommon-x11-dev
        # start xvfb in the background
        sudo /usr/bin/Xvfb $DISPLAY -screen 0 1280x1024x24 &
    - name: Install Python dependencies
      run: |
        # prerequisites
        python -m pip install --upgrade pip wheel
        python -m pip install coverage flake8 pytest
        # install base dependencies
        # https://github.com/luispedro/mahotas/issues/144
        pip install mahotas==1.4.13
        pip install .
        pip install -r tests/requirements.txt
        # show installed packages
        pip freeze
    - name: Install extended dependencies
      if: matrix.deps == 'all'
      run: |
        pip install .[cli,gui,torch]
        pip install -r tests/requirements-full.txt
    - name: Lint with flake8
      run: |
        flake8 --exclude _version.py .
    - name: Start application and print version
      if: matrix.deps == 'all'
      env:
        # Display must be available globally for linux to know where xvfb is
        QT_DEBUG_PLUGINS: 1
      run: |
        chipstream-gui --version
        chipstream-cli --version
    - name: Test with pytest
      run: |
         coverage run --source=chipstream -m pytest -x tests
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3