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3dSDPViewer_8cpp_source.html
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<div class="title">3dSDPViewer.cpp</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span>  </div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor">#include <iostream></span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  </div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor">#include "DGtal/base/Common.h"</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="preprocessor">#include "DGtal/helpers/StdDefs.h"</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor">#include "DGtal/io/viewers/Viewer3D.h"</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor">#include "DGtal/io/DrawWithDisplay3DModifier.h"</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#include "DGtal/io/readers/TableReader.h"</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor">#include "DGtal/io/readers/PointListReader.h"</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor">#include "DGtal/io/readers/MeshReader.h"</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include "DGtal/topology/helpers/Surfaces.h"</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include "DGtal/topology/SurfelAdjacency.h"</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include "DGtal/shapes/Mesh.h"</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include "DGtal/io/Color.h"</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include "DGtal/io/colormaps/HueShadeColorMap.h"</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include "DGtal/io/readers/GenericReader.h"</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include "DGtal/io/DrawWithDisplay3DModifier.h"</span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  </div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="preprocessor">#include "CLI11.hpp"</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  </div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="keyword">using namespace </span>std;</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="keyword">using namespace </span><a class="code" href="namespaceDGtal.html">DGtal</a>;</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="keyword">using namespace </span>Z3i;</div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  </div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer3D<Z3i::Space, Z3i::KSpace></a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a>;</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span>  </div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span> <span class="comment">// call back function to display voxel coordinates</span></div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span> <span class="keywordtype">int</span> displayCoordsCallBack(<span class="keywordtype">void</span> *viewer, <span class="keywordtype">int</span> name, <span class="keywordtype">void</span> *data)</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> {</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  vector<Z3i::RealPoint> *vectVoxels = (vector<Z3i::RealPoint> *)data;</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  std::stringstream ss;</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  ss << <span class="stringliteral">"Selected voxel: ("</span> << (*vectVoxels)[name][0] << <span class="stringliteral">", "</span>;</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  ss << (*vectVoxels)[name][1] << <span class="stringliteral">", "</span>;</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  ss << (*vectVoxels)[name][2] << <span class="stringliteral">") "</span>;</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  ((<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a> *)viewer)->displayMessage(QString(ss.str().c_str()), 100000);</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="keywordflow">return</span> 0;</div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> }</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span>  </div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> <span class="keywordtype">int</span> <a class="code" href="3dHeightMapViewer_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627">main</a>(<span class="keywordtype">int</span> argc, <span class="keywordtype">char</span> **argv)</div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> {</div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span>  <span class="comment">// parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span>  CLI::App app;</div>
<div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  std::string inputFileName;</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  std::vector<unsigned int> vectIndexSDP{0, 1, 2};</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> lineColor(100, 100, 250);</div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> pointColor(250, 250, 250);</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  std::vector<int> vectColorPt;</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  std::vector<int> vectColorLine;</div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  std::string meshName;</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  std::string typePrimitive{<span class="stringliteral">"voxel"</span>};</div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  std::string vectorsFileName;</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  std::vector<double> vectSphereRadius;</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  std::vector<unsigned int> vectColMesh;</div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  std::vector<unsigned int> vectIndexColorImport{3, 4, 5};</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordtype">bool</span> importColorLabels{<span class="keyword">false</span>};</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="keywordtype">bool</span> noPointDisplay{<span class="keyword">false</span>};</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  <span class="keywordtype">bool</span> drawLines{<span class="keyword">false</span>};</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  <span class="keywordtype">bool</span> sphereRadiusFromInput{<span class="keyword">true</span>};</div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  <span class="keywordtype">bool</span> importColors{<span class="keyword">false</span>};</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  <span class="keywordtype">bool</span> interactiveDisplayVoxCoords{<span class="keyword">false</span>};</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keywordtype">float</span> sx{1.0};</div>
<div class="line"><a name="l00174"></a><span class="lineno"> 174</span>  <span class="keywordtype">float</span> sy{1.0};</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordtype">float</span> sz{1.0};</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> sphereResolution{30};</div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keywordtype">double</span> sphereRadius{0.2};</div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keywordtype">double</span> lineSize{0.2};</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keywordtype">double</span> filterValue{100.0};</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  <span class="keywordtype">double</span> constantNorm{0.0};</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  <span class="keywordtype">double</span> percentageFilterVect{100.0};</div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> customAlphaMesh;</div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  </div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> colorLabelIndex = 3;</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  </div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  app.description(<span class="stringliteral">"Display sequence of 3d discrete points by using QGLviewer."</span>);</div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  app.add_option(<span class="stringliteral">"-i,--input,1"</span>, inputFileName, <span class="stringliteral">"input file: sdp (sequence of discrete points)."</span>)</div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  ->required()</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span>  ->check(CLI::ExistingFile);</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  app.add_option(<span class="stringliteral">"--SDPindex"</span>, vectIndexSDP, <span class="stringliteral">"specify the sdp index (by default 0,1,2)."</span>)</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  ->expected(3);</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  app.add_option(<span class="stringliteral">"--pointColor,-c"</span>, vectColorPt, <span class="stringliteral">"set the color of points: r g b a."</span>)</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  ->expected(4);</div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  app.add_option(<span class="stringliteral">"--lineColor,-l"</span>, vectColorLine, <span class="stringliteral">"set the color of line: r g b a."</span>)</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  ->expected(4);</div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  app.add_option(<span class="stringliteral">"--addMesh,-m"</span>, meshName, <span class="stringliteral">"append a mesh (off/obj) to the point set visualization."</span>);</div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  app.add_option(<span class="stringliteral">"--customAlphaMesh"</span>, customAlphaMesh, <span class="stringliteral">"set the alpha components of the colors of the mesh faces (can be applied for each mesh)."</span>);</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <span class="keyword">auto</span> optMesh = app.add_option(<span class="stringliteral">"--customColorMesh"</span>, vectColMesh, <span class="stringliteral">"set the R, G, B, A components of the colors of the mesh faces (mesh added with option --addMesh)."</span>)</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  ->expected(4);</div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <span class="keyword">auto</span> importColOpt = app.add_flag(<span class="stringliteral">"--importColors"</span>, importColors, <span class="stringliteral">"import point colors from the input file (R G B colors should be by default at index 3, 4, 5)."</span>);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  app.add_option(<span class="stringliteral">"--setColorsIndex"</span>, vectIndexColorImport, <span class="stringliteral">"customize the index of the imported colors in the source file (used by --importColor). By default the initial indexes are 3, 4, 5."</span>)</div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  ->expected(3)</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  ->needs(importColOpt);</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  </div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  app.add_flag(<span class="stringliteral">"--importColorLabels"</span>, importColorLabels, <span class="stringliteral">"import color labels from the input file (label index should be by default at index 3)."</span>);</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  app.add_option(<span class="stringliteral">"--setColorLabelIndex"</span>, colorLabelIndex, <span class="stringliteral">"customize the index of the imported color labels in the source file (used by -importColorLabels)."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  app.add_option(<span class="stringliteral">"--filter,-f"</span>, filterValue, <span class="stringliteral">"filter input file in order to display only the [arg] percent of the input 3D points (uniformly selected)."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  app.add_flag(<span class="stringliteral">"--noPointDisplay"</span>, noPointDisplay, <span class="stringliteral">"usefull for instance to only display the lines between points."</span>);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  app.add_flag(<span class="stringliteral">"--drawLines"</span>, drawLines, <span class="stringliteral">"draw the line between discrete points."</span>);</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  app.add_option(<span class="stringliteral">"--scaleX,-x"</span>, sx, <span class="stringliteral">"set the scale value in the X direction"</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  app.add_option(<span class="stringliteral">"--scaleY,-y"</span>, sy, <span class="stringliteral">"set the scale value in the Y direction"</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  app.add_option(<span class="stringliteral">"--scaleZ,-z"</span>, sy, <span class="stringliteral">"set the scale value in the Z direction"</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  app.add_option(<span class="stringliteral">"--sphereResolution"</span>, sphereResolution, <span class="stringliteral">"defines the sphere resolution (used when the primitive is set to the sphere)."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  app.add_option(<span class="stringliteral">"-s,--sphereRadius"</span>, sphereRadius, <span class="stringliteral">"defines the sphere radius (used when the primitive is set to the sphere)."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  app.add_flag(<span class="stringliteral">"--sphereRadiusFromInput"</span>, sphereRadiusFromInput, <span class="stringliteral">"takes, as sphere radius, the 4th field of the sdp input file."</span>);</div>
<div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  app.add_option(<span class="stringliteral">"--lineSize"</span>, lineSize, <span class="stringliteral">"defines the line size (used when the --drawLines or --drawVectors option is selected)."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00217"></a><span class="lineno"> 217</span>  app.add_option(<span class="stringliteral">"--primitive,-p"</span>, typePrimitive, <span class="stringliteral">"set the primitive to display the set of points."</span>, <span class="keyword">true</span>)</div>
<div class="line"><a name="l00218"></a><span class="lineno"> 218</span>  ->check(CLI::IsMember({<span class="stringliteral">"voxel"</span>, <span class="stringliteral">"glPoints"</span>, <span class="stringliteral">"sphere"</span>}));</div>
<div class="line"><a name="l00219"></a><span class="lineno"> 219</span>  app.add_option(<span class="stringliteral">"--drawVectors,-v"</span>, vectorsFileName, <span class="stringliteral">"SDP vector file: draw a set of vectors from the given file (each vector are determined by two consecutive point given, each point represented by its coordinates on a single line."</span>);</div>
<div class="line"><a name="l00220"></a><span class="lineno"> 220</span>  </div>
<div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  app.add_option(<span class="stringliteral">"--unitVector,-u"</span>, constantNorm, <span class="stringliteral">"specifies that the SDP vector file format (of --drawVectors option) should be interpreted as unit vectors (each vector position is be defined from the input point (with input order) with a constant norm defined by [arg])."</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  </div>
<div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  app.add_option(<span class="stringliteral">"--filterVectors"</span>, percentageFilterVect, <span class="stringliteral">"filters vector input file in order to display only the [arg] percent of the input vectors (uniformly selected, to be used with option --drawVectors else no effect). "</span>, <span class="keyword">true</span>);</div>
<div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  app.add_flag(<span class="stringliteral">"--interactiveDisplayVoxCoords"</span>, interactiveDisplayVoxCoords, <span class="stringliteral">" by using this option the coordinates can be displayed after selection (shift+left click on voxel)."</span>);</div>
<div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  </div>
<div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  app.get_formatter()->column_width(40);</div>
<div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  CLI11_PARSE(app, argc, argv);</div>
<div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="comment">// END parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  </div>
<div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keywordflow">if</span> (vectColorLine.size() == 4)</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  {</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  lineColor.setRGBi(vectColorLine[0], vectColorLine[1], vectColorLine[2], vectColorLine[3]);</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  }</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  <span class="keywordflow">if</span> (vectColorPt.size() == 4)</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  {</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  pointColor.setRGBi(vectColorPt[0], vectColorPt[1], vectColorPt[2], vectColorPt[3]);</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  }</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  </div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  QApplication application(argc, argv);</div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  </div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="keywordtype">bool</span> useUnitVector = constantNorm != 0.0;</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="keyword">typedef</span> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer3D<Z3i::Space, Z3i::KSpace></a> <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a>;</div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1KhalimskySpaceND.html">Z3i::KSpace</a> K;</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Viewer3D.html">Viewer</a> viewer(K);</div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  viewer.setWindowTitle(<span class="stringliteral">"3dSPD Viewer"</span>);</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  viewer.show();</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  viewer.setGLScale(sx, sy, sz);</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  viewer.myGLLineMinWidth = lineSize;</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>(pointColor, pointColor);</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  </div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  <span class="comment">// Get vector of colors if imported.</span></div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  std::vector<Color> vectColors;</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  <span class="keywordflow">if</span> (importColors)</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  {</div>
<div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  std::vector<unsigned int> r = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1TableReader.html">TableReader<unsigned int>::getColumnElementsFromFile</a>(inputFileName, vectIndexColorImport[0]);</div>
<div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  std::vector<unsigned int> g = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1TableReader.html">TableReader<unsigned int>::getColumnElementsFromFile</a>(inputFileName, vectIndexColorImport[1]);</div>
<div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  std::vector<unsigned int> b = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1TableReader.html">TableReader<unsigned int>::getColumnElementsFromFile</a>(inputFileName, vectIndexColorImport[2]);</div>
<div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < r.size(); i++)</div>
<div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  {</div>
<div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  vectColors.push_back(<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a>(r[i], g[i], b[i]));</div>
<div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  }</div>
<div class="line"><a name="l00263"></a><span class="lineno"> 263</span>  }</div>
<div class="line"><a name="l00264"></a><span class="lineno"> 264</span>  </div>
<div class="line"><a name="l00265"></a><span class="lineno"> 265</span>  <span class="comment">// Get vector of colors if imported.</span></div>
<div class="line"><a name="l00266"></a><span class="lineno"> 266</span>  std::vector<int> vectColorLabels;</div>
<div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> maxLabel = 1;</div>
<div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordflow">if</span> (importColorLabels)</div>
<div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  {</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  vectColorLabels = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1TableReader.html">TableReader<int>::getColumnElementsFromFile</a>(inputFileName, colorLabelIndex);</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  maxLabel = *(std::max_element(vectColorLabels.begin(), vectColorLabels.end()));</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  }</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1HueShadeColorMap.html">HueShadeColorMap<unsigned int></a> aColorMap(0, maxLabel);</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  </div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keywordflow">if</span> (sphereRadiusFromInput)</div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  {</div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  vectSphereRadius = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1TableReader.html">TableReader<double>::getColumnElementsFromFile</a>(inputFileName, 3);</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span>  }</div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  </div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  vector<Z3i::RealPoint> vectVoxels;</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  vectVoxels = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1PointListReader.html">PointListReader<Z3i::RealPoint>::getPointsFromFile</a>(inputFileName, vectIndexSDP);</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  </div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  <span class="keywordtype">int</span> name = 0;</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  <span class="keywordflow">if</span> (!noPointDisplay)</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  {</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  <span class="keywordflow">if</span> (typePrimitive == <span class="stringliteral">"glPoints"</span>)</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span>  {</div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  viewer.setUseGLPointForBalls(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  }</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span>  </div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  <span class="keywordtype">int</span> step = max(1, (<span class="keywordtype">int</span>)(100 / filterValue));</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < vectVoxels.size(); i = i + step)</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  {</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <span class="keywordflow">if</span> (importColors)</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span>  {</div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> col = vectColors[i];</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  viewer.setFillColor(col);</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  }</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  <span class="keywordflow">else</span> <span class="keywordflow">if</span> (importColorLabels)</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  {</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> index = vectColorLabels[i];</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a> col = aColorMap(index);</div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  viewer.setFillColor(col);</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  }</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  </div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span>  <span class="keywordflow">if</span> (typePrimitive == <span class="stringliteral">"voxel"</span>)</div>
<div class="line"><a name="l00307"></a><span class="lineno"> 307</span>  {</div>
<div class="line"><a name="l00308"></a><span class="lineno"> 308</span>  <span class="keywordflow">if</span> (interactiveDisplayVoxCoords)</div>
<div class="line"><a name="l00309"></a><span class="lineno"> 309</span>  {</div>
<div class="line"><a name="l00310"></a><span class="lineno"> 310</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetName3D.html">SetName3D</a>(name++);</div>
<div class="line"><a name="l00311"></a><span class="lineno"> 311</span>  }</div>
<div class="line"><a name="l00312"></a><span class="lineno"> 312</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1PointVector.html">Z3i::Point</a>((<span class="keywordtype">int</span>)vectVoxels.at(i)[0],</div>
<div class="line"><a name="l00313"></a><span class="lineno"> 313</span>  (<span class="keywordtype">int</span>)vectVoxels.at(i)[1],</div>
<div class="line"><a name="l00314"></a><span class="lineno"> 314</span>  (<span class="keywordtype">int</span>)vectVoxels.at(i)[2]);</div>
<div class="line"><a name="l00315"></a><span class="lineno"> 315</span>  }</div>
<div class="line"><a name="l00316"></a><span class="lineno"> 316</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00317"></a><span class="lineno"> 317</span>  {</div>
<div class="line"><a name="l00318"></a><span class="lineno"> 318</span>  viewer.addBall(vectVoxels.at(i), sphereRadius, sphereResolution);</div>
<div class="line"><a name="l00319"></a><span class="lineno"> 319</span>  }</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  }</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  </div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1CustomColors3D.html">CustomColors3D</a>(lineColor, lineColor);</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  <span class="keywordflow">if</span> (drawLines)</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  {</div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 1; i < vectVoxels.size(); i++)</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  {</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span>  viewer.addLine(vectVoxels.at(i - 1), vectVoxels.at(i), lineSize);</div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  }</div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  }</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  </div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  <span class="keywordflow">if</span> (vectorsFileName != <span class="stringliteral">""</span>)</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  {</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  std::vector<Z3i::RealPoint> vectorsPt = <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1PointListReader.html">PointListReader<Z3i::RealPoint>::getPointsFromFile</a>(vectorsFileName);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span>  <span class="keywordflow">if</span> (vectorsPt.size() % 2 == 1)</div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  {</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/namespaceDGtal.html#a604c07ec391ad12a1f3fb6479993f112">trace</a>.<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Trace.html#ad054990834d2763627166540087a2980">info</a>() << <span class="stringliteral">"Warning the two set of points doesn't contains the same number of points, some vectors will be skipped."</span> << std::endl;</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  }</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  </div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span>  <span class="keywordtype">double</span> percentage = percentageFilterVect;</div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keywordtype">int</span> step = max(1, (<span class="keywordtype">int</span>)(100 / percentage));</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  </div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  <span class="keywordflow">if</span> (useUnitVector)</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  {</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < std::min(vectVoxels.size(), vectorsPt.size()); i = i + 2 * step)</div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  {</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  viewer.addLine(vectVoxels.at(i), vectVoxels.at(i) + vectorsPt.at(i) * constantNorm, lineSize);</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span>  }</div>
<div class="line"><a name="l00349"></a><span class="lineno"> 349</span>  <span class="keywordflow">else</span></div>
<div class="line"><a name="l00350"></a><span class="lineno"> 350</span>  {</div>
<div class="line"><a name="l00351"></a><span class="lineno"> 351</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i < vectorsPt.size() - 1; i = i + 2 * step)</div>
<div class="line"><a name="l00352"></a><span class="lineno"> 352</span>  {</div>
<div class="line"><a name="l00353"></a><span class="lineno"> 353</span>  viewer.addLine(vectorsPt.at(i), vectorsPt.at(i + 1), lineSize);</div>
<div class="line"><a name="l00354"></a><span class="lineno"> 354</span>  }</div>
<div class="line"><a name="l00355"></a><span class="lineno"> 355</span>  }</div>
<div class="line"><a name="l00356"></a><span class="lineno"> 356</span>  }</div>
<div class="line"><a name="l00357"></a><span class="lineno"> 357</span>  <span class="keywordflow">if</span> (meshName != <span class="stringliteral">""</span>)</div>
<div class="line"><a name="l00358"></a><span class="lineno"> 358</span>  {</div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="keywordtype">bool</span> customColorMesh = vectColMesh.size() == 4;</div>
<div class="line"><a name="l00360"></a><span class="lineno"> 360</span>  <span class="keywordflow">if</span> (customColorMesh)</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  {</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  viewer.setFillColor(<a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">DGtal::Color</a>(vectColMesh[0], vectColMesh[1], vectColMesh[2], vectColMesh[3]));</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  }</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Mesh.html">Mesh<Z3i::RealPoint></a> mesh(!customColorMesh);</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  mesh << meshName;</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  <span class="keywordflow">if</span> (customAlphaMesh)</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span>  {</div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j = 0; j < mesh.nbFaces(); j++)</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  {</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span>  <span class="keyword">auto</span> c = mesh.getFaceColor(j);</div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  mesh.setFaceColor(j, <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/classDGtal_1_1Color.html">Color</a>(c.red(), c.green(), c.blue(), customAlphaMesh));</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  }</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span>  viewer << mesh;</div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  }</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  <span class="keywordflow">if</span> (interactiveDisplayVoxCoords)</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  {</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  viewer << <a class="codeRef" href="https://dgtal-team.github.io/doc-nightly/structDGtal_1_1SetSelectCallback3D.html">SetSelectCallback3D</a>(displayCoordsCallBack, &vectVoxels, 0, vectVoxels.size() - 1);</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  }</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  </div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  viewer << Viewer3D<>::updateDisplay;</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span>  <span class="keywordflow">return</span> application.exec();</div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  }</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  }</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> }</div>
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