From 9efce83627fc1c5802c84138a6f49a91c2ea9c1c Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Wed, 18 Sep 2024 14:51:24 -0700
Subject: [PATCH 1/9] Upgrade commons-utilbeans, commons-collections and h2.

---
 pom.xml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pom.xml b/pom.xml
index 62dbd58d..bdc922c2 100644
--- a/pom.xml
+++ b/pom.xml
@@ -97,12 +97,12 @@
         <dependency>
             <groupId>commons-beanutils</groupId>
             <artifactId>commons-beanutils</artifactId>
-            <version>1.8.3</version>
+            <version>1.9.4</version>
         </dependency>
         <dependency>
             <groupId>com.h2database</groupId>
             <artifactId>h2</artifactId>
-            <version>1.3.163</version>
+            <version>2.3.232</version>
             <scope>test</scope>
         </dependency>
         <dependency>
@@ -229,7 +229,7 @@
         <dependency>
             <groupId>commons-collections</groupId>
             <artifactId>commons-collections</artifactId>
-            <version>3.2.1</version>
+            <version>3.2.2</version>
         </dependency>
         <dependency>
             <groupId>ch.hsr</groupId>

From 57cf6e9a89ce4837bfb3ab557111964a49d85551 Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Wed, 18 Sep 2024 15:09:39 -0700
Subject: [PATCH 2/9] Upgrade json-smart.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index bdc922c2..10c80186 100644
--- a/pom.xml
+++ b/pom.xml
@@ -209,7 +209,7 @@
         <dependency>
             <groupId>net.minidev</groupId>
             <artifactId>json-smart</artifactId>
-            <version>1.0.9</version>
+            <version>2.5.1</version>
         </dependency>
         <dependency>
             <groupId>org.apache.jena</groupId>

From 4667ef96f8096cfab1c9fe2683ecd4cdc46748cc Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Wed, 18 Sep 2024 18:17:43 -0700
Subject: [PATCH 3/9] Upgraded log4j-1.2-api to 2.24.0.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 10c80186..21f180a7 100644
--- a/pom.xml
+++ b/pom.xml
@@ -254,7 +254,7 @@
         <dependency>
             <groupId>org.apache.logging.log4j</groupId>
             <artifactId>log4j-1.2-api</artifactId>
-            <version>2.17.1</version>
+            <version>2.24.0</version>
         </dependency>
         <dependency>
             <groupId>org.apache.logging.log4j</groupId>

From 73639e27758cbe2c5cf14ac4d91f374eecde5015 Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Fri, 20 Sep 2024 10:57:48 -0700
Subject: [PATCH 4/9] Bump slf4j-api to 2.0.16.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 21f180a7..53e50cb1 100644
--- a/pom.xml
+++ b/pom.xml
@@ -193,7 +193,7 @@
         <dependency>
             <groupId>org.slf4j</groupId>
             <artifactId>slf4j-api</artifactId>
-            <version>1.7.36</version>
+            <version>2.0.16</version>
         </dependency>
         <dependency>
             <groupId>org.slf4j</groupId>

From 8267a7134df10c5d51b490f604e8652f11c1b3ee Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Fri, 20 Sep 2024 11:24:21 -0700
Subject: [PATCH 5/9] Bump the commons-lang3 to 3.17.0.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 53e50cb1..b75a7d39 100644
--- a/pom.xml
+++ b/pom.xml
@@ -188,7 +188,7 @@
         <dependency>
             <groupId>org.apache.commons</groupId>
             <artifactId>commons-lang3</artifactId>
-            <version>3.4</version>
+            <version>3.17.0</version>
         </dependency>
         <dependency>
             <groupId>org.slf4j</groupId>

From 7e4f452f5a79810f568484cdc01b731120049cb0 Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Fri, 20 Sep 2024 14:11:57 -0700
Subject: [PATCH 6/9] upgrade spring-data-commons to 3.4.5.

---
 pom.xml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pom.xml b/pom.xml
index b75a7d39..104eba55 100644
--- a/pom.xml
+++ b/pom.xml
@@ -67,7 +67,7 @@
         <dependency>
             <groupId>junit</groupId>
             <artifactId>junit</artifactId>
-            <version>4.12</version>
+            <version>4.13.2</version>
             <scope>test</scope>
         </dependency>
         <dependency>
@@ -128,12 +128,12 @@
         <dependency>
             <groupId>org.springframework.data</groupId>
             <artifactId>spring-data-jpa</artifactId>
-            <version>1.4.5.RELEASE</version>
+            <version>3.3.4</version>
         </dependency>
         <dependency>
             <groupId>org.springframework.data</groupId>
             <artifactId>spring-data-commons</artifactId>
-            <version>1.6.5.RELEASE</version>
+            <version>3.3.4</version>
         </dependency>
         <dependency>
             <groupId>org.springframework</groupId>

From b035a2acdf8374e4e03fa18df5567f1cae428517 Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Tue, 24 Sep 2024 11:42:13 -0700
Subject: [PATCH 7/9] Bump the maven plugin versions.

---
 pom.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pom.xml b/pom.xml
index 104eba55..784675bd 100644
--- a/pom.xml
+++ b/pom.xml
@@ -323,7 +323,7 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-compiler-plugin</artifactId>
-                <version>2.0.1</version>
+                <version>3.13.0</version>
             </plugin>
             <plugin>
                 <groupId>com.mycila.maven-license-plugin</groupId>
@@ -403,7 +403,7 @@
             <plugin>
                 <groupId>com.coderplus.maven.plugins</groupId>
                 <artifactId>copy-rename-maven-plugin</artifactId>
-                <version>1.0</version>
+                <version>1.0.1</version>
                 <executions>
                     <execution>
                         <id>copy-file</id>

From c98876220c892ec3203456042496954cc080b48a Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Tue, 24 Sep 2024 13:04:18 -0700
Subject: [PATCH 8/9] Bump log4j-jcl version.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 784675bd..a33d6506 100644
--- a/pom.xml
+++ b/pom.xml
@@ -264,7 +264,7 @@
         <dependency>
             <groupId>org.apache.logging.log4j</groupId>
             <artifactId>log4j-jcl</artifactId>
-            <version>2.17.1</version>
+            <version>2.24.0</version>
         </dependency>
         <dependency>
             <groupId>org.apache.solr</groupId>

From 95155c23b568d33e28d04a10a5ab1e3cbf5df4cc Mon Sep 17 00:00:00 2001
From: Jing Tao <tao@nceas.ucsb.edu>
Date: Tue, 24 Sep 2024 13:19:37 -0700
Subject: [PATCH 9/9] Bump jackson-annotations version.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index a33d6506..2c23d461 100644
--- a/pom.xml
+++ b/pom.xml
@@ -274,7 +274,7 @@
         <dependency>
             <groupId>com.fasterxml.jackson.core</groupId>
             <artifactId>jackson-annotations</artifactId>
-            <version>2.13.3</version>
+            <version>2.17.2</version>
         </dependency>
         <!-- API, java.xml.bind module -->
         <dependency>