From e697dbbacd056f8ff63d0862e057f9bcf334c7e9 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Tue, 30 Jul 2024 09:58:15 +0200 Subject: [PATCH 01/60] a integration test --- core/test/hws_integration_test.jl | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 core/test/hws_integration_test.jl diff --git a/core/test/hws_integration_test.jl b/core/test/hws_integration_test.jl new file mode 100644 index 000000000..208aa28a1 --- /dev/null +++ b/core/test/hws_integration_test.jl @@ -0,0 +1,25 @@ +@testitem "HWS model" begin + using SciMLBase: successful_retcode + + toml_path = normpath(@__DIR__, "../../../hws_2024_7_0/hws.toml") + @test ispath(toml_path) + model = Ribasim.run(toml_path) + @test model isa Ribasim.Model + @test successful_retcode(model) + + basin_bytes_bench = read(normpath(@__DIR__, "benchmark/hws/basin_state.arrow")) + basin_bench = Arrow.Table(basin_bytes_bench) + + basin_bytes = read(normpath(dirname(toml_path), "results/basin_state.arrow")) + basin = Arrow.Table(basin_bytes) + + @testset "Results values" begin + @test basin.node_id == basin_bench.node_id + @test basin.level == basin_bench.level + end + + timed = @timed Ribasim.run(toml_path) + #(value = Model(ts: 464, t: 2024-04-27T00:00:00), time = 454.9340023, bytes = 306909937337, + # gctime = 3.5470947, gcstats = Base.GC_Diff(306909937337, 83274517, 2762028, 444416023, 2763506, 83274398, 3547094700, 2278, 0)) + @test timed.time <= 600 +end From f5a151b6ac16071e54513e634540a365eba24f7c Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Wed, 31 Jul 2024 11:38:41 +0200 Subject: [PATCH 02/60] add a log for performance --- .../hws_integration_test.jl | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) rename core/{test => integration_test}/hws_integration_test.jl (60%) diff --git a/core/test/hws_integration_test.jl b/core/integration_test/hws_integration_test.jl similarity index 60% rename from core/test/hws_integration_test.jl rename to core/integration_test/hws_integration_test.jl index 208aa28a1..9e8857563 100644 --- a/core/test/hws_integration_test.jl +++ b/core/integration_test/hws_integration_test.jl @@ -1,4 +1,4 @@ -@testitem "HWS model" begin +@testitem "HWS model integration test" begin using SciMLBase: successful_retcode toml_path = normpath(@__DIR__, "../../../hws_2024_7_0/hws.toml") @@ -21,5 +21,16 @@ timed = @timed Ribasim.run(toml_path) #(value = Model(ts: 464, t: 2024-04-27T00:00:00), time = 454.9340023, bytes = 306909937337, # gctime = 3.5470947, gcstats = Base.GC_Diff(306909937337, 83274517, 2762028, 444416023, 2763506, 83274398, 3547094700, 2278, 0)) + + # current benchmark is 464s + benchmark_runtime = 464 @test timed.time <= 600 + performance_diff = round((timed.time - benchmark_runtime) / benchmark_runtime * 100, 2) + if performance_diff < 0.0 + @info "Runtime is $timed.time and it is $performance_diff % faster than benchmark" + elseif performance_diff > 0.0 && performance_diff < 0.2 + @info "Runtime is $timed.time and it is $performance_diff % slower than benchmark" + else + @warn "Runtime is $timed.time and it is $performance_diff % slower than benchmark, close to fail the benchmark" + end end From eb20bf374d8db8c2037c53eed761e8e4e8529f92 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Wed, 31 Jul 2024 11:40:20 +0200 Subject: [PATCH 03/60] separate integration test from unit tests --- core/test/runtests.jl | 12 +++++++++++- pixi.toml | 1 + 2 files changed, 12 insertions(+), 1 deletion(-) diff --git a/core/test/runtests.jl b/core/test/runtests.jl index 442308612..a84e8c172 100644 --- a/core/test/runtests.jl +++ b/core/test/runtests.jl @@ -1,3 +1,13 @@ using ReTestItems, Ribasim -runtests(Ribasim; nworkers = min(4, Sys.CPU_THREADS ÷ 2), nworker_threads = 2) +path = pwd() +print(path) +if in("integration", ARGS) + runtests( + "../integration_test"; + nworkers = min(4, Sys.CPU_THREADS ÷ 2), + nworker_threads = 2, + ) +else + runtests("../test"; nworkers = min(4, Sys.CPU_THREADS ÷ 2), nworker_threads = 2) +end diff --git a/pixi.toml b/pixi.toml index d3aea6242..ddfb12539 100644 --- a/pixi.toml +++ b/pixi.toml @@ -95,6 +95,7 @@ generate-testmodels = { cmd = "python utils/generate-testmodels.py", inputs = [ ] } tests = { depends_on = ["lint", "test-ribasim-python", "test-ribasim-core"] } delwaq = { cmd = "pytest python/ribasim/tests/test_delwaq.py" } +model-integration-test = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test(test_args=[\"integration\"])'" } # Codegen codegen = { cmd = "julia --project utils/gen_python.jl && ruff format python/ribasim/ribasim/schemas.py", depends_on = [ "initialize-julia", From ee7ae618d27ba019c18ba07381cb458aaf9a91c6 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Wed, 31 Jul 2024 16:14:28 +0200 Subject: [PATCH 04/60] debug test and reduce duplication --- core/integration_test/hws_integration_test.jl | 20 +++++++++---------- core/test/runtests.jl | 12 ++++------- 2 files changed, 14 insertions(+), 18 deletions(-) diff --git a/core/integration_test/hws_integration_test.jl b/core/integration_test/hws_integration_test.jl index 9e8857563..8d1a62757 100644 --- a/core/integration_test/hws_integration_test.jl +++ b/core/integration_test/hws_integration_test.jl @@ -1,5 +1,6 @@ @testitem "HWS model integration test" begin using SciMLBase: successful_retcode + using Arrow toml_path = normpath(@__DIR__, "../../../hws_2024_7_0/hws.toml") @test ispath(toml_path) @@ -7,7 +8,7 @@ @test model isa Ribasim.Model @test successful_retcode(model) - basin_bytes_bench = read(normpath(@__DIR__, "benchmark/hws/basin_state.arrow")) + basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/hws/basin_state.arrow")) basin_bench = Arrow.Table(basin_bytes_bench) basin_bytes = read(normpath(dirname(toml_path), "results/basin_state.arrow")) @@ -15,22 +16,21 @@ @testset "Results values" begin @test basin.node_id == basin_bench.node_id - @test basin.level == basin_bench.level + @test all(q -> abs(q) < 0.01, basin.level - basin_bench.level) end timed = @timed Ribasim.run(toml_path) - #(value = Model(ts: 464, t: 2024-04-27T00:00:00), time = 454.9340023, bytes = 306909937337, - # gctime = 3.5470947, gcstats = Base.GC_Diff(306909937337, 83274517, 2762028, 444416023, 2763506, 83274398, 3547094700, 2278, 0)) # current benchmark is 464s - benchmark_runtime = 464 - @test timed.time <= 600 - performance_diff = round((timed.time - benchmark_runtime) / benchmark_runtime * 100, 2) + benchmark_runtime = 600 + @test timed.time <= 1200 + performance_diff = + round((timed.time - benchmark_runtime) / benchmark_runtime * 100; digits = 2) if performance_diff < 0.0 - @info "Runtime is $timed.time and it is $performance_diff % faster than benchmark" + @info "Runtime is $(timed.time) and it is $performance_diff % faster than benchmark" elseif performance_diff > 0.0 && performance_diff < 0.2 - @info "Runtime is $timed.time and it is $performance_diff % slower than benchmark" + @info "Runtime is $(timed.time) and it is $performance_diff % slower than benchmark" else - @warn "Runtime is $timed.time and it is $performance_diff % slower than benchmark, close to fail the benchmark" + @warn "Runtime is $(timed.time) and it is $performance_diff % slower than benchmark, close to fail the benchmark" end end diff --git a/core/test/runtests.jl b/core/test/runtests.jl index a84e8c172..8c262e59a 100644 --- a/core/test/runtests.jl +++ b/core/test/runtests.jl @@ -1,13 +1,9 @@ using ReTestItems, Ribasim -path = pwd() -print(path) if in("integration", ARGS) - runtests( - "../integration_test"; - nworkers = min(4, Sys.CPU_THREADS ÷ 2), - nworker_threads = 2, - ) + test_type = "../integration_test" else - runtests("../test"; nworkers = min(4, Sys.CPU_THREADS ÷ 2), nworker_threads = 2) + test_type = "../test" end + +runtests(test_type; nworkers = min(4, Sys.CPU_THREADS ÷ 2), nworker_threads = 2) From 4667ed9fb22b045c21758ad623df3411707ec1da Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 11:45:27 +0200 Subject: [PATCH 05/60] TC configuration --- .teamcity/Ribasim/Project.kt | 1 + .teamcity/Templates/IntegrationTest.kt | 60 ++++++++++++++++++++++ .teamcity/Testbench/IntegrationTestHWS.kt | 51 ++++++++++++++++++ benchmark/hws/basin_state.arrow | Bin 0 -> 2250 bytes core/test/runtests.jl | 2 +- 5 files changed, 113 insertions(+), 1 deletion(-) create mode 100644 .teamcity/Templates/IntegrationTest.kt create mode 100644 .teamcity/Testbench/IntegrationTestHWS.kt create mode 100644 benchmark/hws/basin_state.arrow diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 8b7df5ba3..2a4d33ffb 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -61,4 +61,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) + subProject(Testbench) }) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt new file mode 100644 index 000000000..9a681ca92 --- /dev/null +++ b/.teamcity/Templates/IntegrationTest.kt @@ -0,0 +1,60 @@ +package Templates + +import jetbrains.buildServer.configs.kotlin.Template +import jetbrains.buildServer.configs.kotlin.buildFeatures.XmlReport +import jetbrains.buildServer.configs.kotlin.buildFeatures.xmlReport +import jetbrains.buildServer.configs.kotlin.buildSteps.script + +fun generateIntegrationTestHeader(platformOs: String): String { + if (platformOs == "Linux") { + return "" + } + + return "" +} + +open class IntegrationTest (platformOs: String) : Template() { + init { + name = "IntegrationTest_${platformOs}_Template" + + artifactRules = """ + + + """.trimIndent() + + vcs { + root(Ribasim.vcsRoots.Ribasim, ". => ribasim") + cleanCheckout = true + } + + val header = generateIntegrationTestHeader(platformOs) + + steps { + script { + name = "Set up pixi" + id = "RUNNER_1505" + workingDir = "ribasim" + scriptContent = header + + """ + pixi --version + pixi run install-ci + """.trimIndent() + } + script { + name = "Run integration tests" + id = "RUNNER_1505" + workingDir = "ribasim" + scriptContent = header + + """ + pixi run model-integration-test + """.trimIndent() + } + } + + failureConditions { + executionTimeoutMin = 30 + } + } +} + +object IntegrationTestWindows : IntegrationTest("Windows) \ No newline at end of file diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt new file mode 100644 index 000000000..ed77dc8ba --- /dev/null +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -0,0 +1,51 @@ +package Testbench + +import Template.* +import jetbrains.buildServer.configs.kotlin.AbsoluteId +import jetbrains.buildServer.configs.kotlin.BuildType +import jetbrains.buildServer.configs.kotlin.FailureAction +import jetbrains.buildServer.configs.kotlin.Project +import jetbrains.buildServer.configs.kotlin.triggers.vcs +import Ribasim.vcsRoots.Ribasim as RibasimVcs + +object RibasimTestbench : Project ({ + id("Testbench") + name = "Testbench" + + buildType(IntegrationTest_Windows) + + template(WindowsAgent) + template(BuildWindows) + template(IntegrationTest) +}) + +object IntegrationTest_Windows : BuildType({ + templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTest) + name = "Test Ribasim Binaries" + + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = false + } + + dependencies { + dependency(Windows_BuildRibasim) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } +}) \ No newline at end of file diff --git a/benchmark/hws/basin_state.arrow b/benchmark/hws/basin_state.arrow new file mode 100644 index 0000000000000000000000000000000000000000..6fc38ac24a2fcff845bb6447f1f604599bd62773 GIT binary patch literal 2250 zcmds3i&Ilq8b5)U2t*zUB@|OkP!Mc@08vnsbC3YB2JitTLqW>R0s`_9t)-Q1MIkWq 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zfc-PhTX?A~enqeV1!r?z*AF0MnBE8)IPU1V>&CU0Ih(6Cp*hold`n{=q)!RhTJn;Q z#+hq9THCgw7rl?^`!7PoXQa-Z{sf`cb=jKTZ6BbMx4*3K52B+ZB3U|7VPfuVFws#p z`$||T-1&NshL75NOr}bW)}SvO=N_4DVWV9?`BWFRH{VluefRAp#~B{-oqa3Vex8fo zb=r#KtL%|zpTUI&b%%nw^37Z8GYC< z8V$*Qkwk7PUWwA%ZpYeG`~$8Pa5t=(?1zBLaoJMf%d|n%;CP!nGcr1*8uEVHO+w}2 zhlKkCv(RHulj3vcpKyo$`PgZlS8%@3#Rh=QsGQ1)n_pOqx~O1%Jc)-X+W#>B0 Date: Thu, 1 Aug 2024 11:50:27 +0200 Subject: [PATCH 06/60] fix vcs step1 --- .teamcity/Ribasim/Project.kt | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 2a4d33ffb..378bea46e 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -6,6 +6,7 @@ import Ribasim.buildTypes.Ribasim_MakeQgisPlugin import Ribasim.vcsRoots.Ribasim import Ribasim_Linux.RibasimLinuxProject import Ribasim_Windows.RibasimWindowsProject +import Testbench.IntegrationTest_Windows import Templates.* import jetbrains.buildServer.configs.kotlin.Project import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage @@ -61,5 +62,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) - subProject(Testbench) + subProject(IntegrationTest_Windows) }) From f78544b857ab9c21ede00418628c1bf372c3c8c6 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 11:52:35 +0200 Subject: [PATCH 07/60] fix vcs 2 --- .teamcity/Templates/IntegrationTest.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 9a681ca92..778025418 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -57,4 +57,4 @@ open class IntegrationTest (platformOs: String) : Template() { } } -object IntegrationTestWindows : IntegrationTest("Windows) \ No newline at end of file +object IntegrationTestWindows : IntegrationTest("Windows") \ No newline at end of file From 9cb981ad9e0cc811f8a557a3a1137a3b40a59ec8 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 12:44:33 +0200 Subject: [PATCH 08/60] vcs fix 3 --- .teamcity/Ribasim/Project.kt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 378bea46e..e0ac3539e 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -6,7 +6,7 @@ import Ribasim.buildTypes.Ribasim_MakeQgisPlugin import Ribasim.vcsRoots.Ribasim import Ribasim_Linux.RibasimLinuxProject import Ribasim_Windows.RibasimWindowsProject -import Testbench.IntegrationTest_Windows +import Testbench.RibasimTestbench import Templates.* import jetbrains.buildServer.configs.kotlin.Project import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage @@ -62,5 +62,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) - subProject(IntegrationTest_Windows) + subProject(RibasimTestbench) }) From d969b4f805bcf12e2f9e0c6eb1231384c91b6ac9 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 13:09:52 +0200 Subject: [PATCH 09/60] fix vcs 4 --- .teamcity/Testbench/IntegrationTestHWS.kt | 32 +++++++++++------------ 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index ed77dc8ba..3fd48b2ce 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,12 +1,10 @@ package Testbench -import Template.* -import jetbrains.buildServer.configs.kotlin.AbsoluteId +import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType -import jetbrains.buildServer.configs.kotlin.FailureAction import jetbrains.buildServer.configs.kotlin.Project -import jetbrains.buildServer.configs.kotlin.triggers.vcs -import Ribasim.vcsRoots.Ribasim as RibasimVcs +import jetbrains.buildServer.configs.kotlin.triggers.schedule + object RibasimTestbench : Project ({ id("Testbench") @@ -16,26 +14,28 @@ object RibasimTestbench : Project ({ template(WindowsAgent) template(BuildWindows) - template(IntegrationTest) + template(IntegrationTestWindows) }) object IntegrationTest_Windows : BuildType({ - templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTest) + templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) name = "Test Ribasim Binaries" - schedule { - id = "" - schedulingPolicy = daily { - hour = 0 - } + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } - branchFilter = "+:" - triggerBuild = always() - withPendingChangesOnly = false + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = false + } } dependencies { - dependency(Windows_BuildRibasim) { + dependency(Ribasim_Windows.Windows_BuildRibasim) { snapshot { } From cebadcc0c3c2622f47f9122bad5b7093a4a07564 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 13:37:05 +0200 Subject: [PATCH 10/60] vcs fix 5 --- .teamcity/Templates/IntegrationTest.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 778025418..eee66e151 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -42,7 +42,7 @@ open class IntegrationTest (platformOs: String) : Template() { } script { name = "Run integration tests" - id = "RUNNER_1505" + id = "RUNNER_1507" workingDir = "ribasim" scriptContent = header + """ From f07d327d6c491ca7feb12ddd4031dea648efe610 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 14:44:47 +0200 Subject: [PATCH 11/60] vcs fix 6 --- .teamcity/Testbench/IntegrationTestHWS.kt | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 3fd48b2ce..366729798 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -12,14 +12,12 @@ object RibasimTestbench : Project ({ buildType(IntegrationTest_Windows) - template(WindowsAgent) - template(BuildWindows) template(IntegrationTestWindows) }) object IntegrationTest_Windows : BuildType({ templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) - name = "Test Ribasim Binaries" + name = "IntegrationTestWindows" triggers{ schedule { From df5d94a8c641adbb4c589523094e41cc59c39e13 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 15:12:38 +0200 Subject: [PATCH 12/60] move windows template to Ribasim/Project.kt --- .teamcity/Ribasim/Project.kt | 2 ++ .teamcity/Ribasim_Windows/RibasimWindowsProject.kt | 2 -- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index e0ac3539e..ad1745956 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -24,6 +24,8 @@ object Project : Project({ template(GithubCommitStatusIntegration) template(GithubPullRequestsIntegration) + template(WindowsAgent) + template(BuildWindows) features { awsConnection { diff --git a/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt b/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt index 3a19c9b0d..74b70a768 100644 --- a/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt +++ b/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt @@ -17,8 +17,6 @@ object RibasimWindowsProject : Project({ buildType(Windows_TestDelwaqCoupling) buildType(Windows_TestRibasimBinaries) - template(WindowsAgent) - template(BuildWindows) template(TestBinariesWindows) template(TestDelwaqCouplingWindows) }) From b17153d001db5120cf88bc6f229f60bf4e44a329 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 1 Aug 2024 15:18:04 +0200 Subject: [PATCH 13/60] sandbox fix 1 --- .teamcity/Testbench/IntegrationTestHWS.kt | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 366729798..7f42f23cb 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,5 +1,6 @@ package Testbench +import Ribasim_Windows.Windows_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project @@ -33,7 +34,7 @@ object IntegrationTest_Windows : BuildType({ } dependencies { - dependency(Ribasim_Windows.Windows_BuildRibasim) { + dependency(Windows_BuildRibasim) { snapshot { } From 28b8fcc0847d481d4e8a8ad8cfad63e2711d1c89 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 2 Aug 2024 09:28:34 +0200 Subject: [PATCH 14/60] linux integration test pipeline is in place --- .teamcity/Ribasim/Project.kt | 2 + .../Ribasim_Linux/RibasimLinuxProject.kt | 2 - .teamcity/Templates/IntegrationTest.kt | 11 +++++- .teamcity/Testbench/IntegrationTestHWS.kt | 37 ++++++++++++++++++- 4 files changed, 47 insertions(+), 5 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index ad1745956..753d0d5b2 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -26,6 +26,8 @@ object Project : Project({ template(GithubPullRequestsIntegration) template(WindowsAgent) template(BuildWindows) + template(LinuxAgent) + template(BuildLinux) features { awsConnection { diff --git a/.teamcity/Ribasim_Linux/RibasimLinuxProject.kt b/.teamcity/Ribasim_Linux/RibasimLinuxProject.kt index d5aa753f0..0d43f7a35 100644 --- a/.teamcity/Ribasim_Linux/RibasimLinuxProject.kt +++ b/.teamcity/Ribasim_Linux/RibasimLinuxProject.kt @@ -15,8 +15,6 @@ object RibasimLinuxProject : Project({ buildType(Linux_BuildRibasim) buildType(Linux_TestRibasimBinaries) - template(LinuxAgent) - template(BuildLinux) template(TestBinariesLinux) }) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index eee66e151..40f8e7ecc 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -7,7 +7,13 @@ import jetbrains.buildServer.configs.kotlin.buildSteps.script fun generateIntegrationTestHeader(platformOs: String): String { if (platformOs == "Linux") { - return "" + return """ + #!/bin/bash + # black magic + source /usr/share/Modules/init/bash + + module load pixi + """.trimIndent() + System.lineSeparator() } return "" @@ -57,4 +63,5 @@ open class IntegrationTest (platformOs: String) : Template() { } } -object IntegrationTestWindows : IntegrationTest("Windows") \ No newline at end of file +object IntegrationTestWindows : IntegrationTest("Windows") +object IntegrationTestLinux : IntegrationTest("Linux") \ No newline at end of file diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 7f42f23cb..3d9803be6 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,6 +1,7 @@ package Testbench import Ribasim_Windows.Windows_BuildRibasim +import Ribasim_Linux.Linux_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project @@ -14,6 +15,7 @@ object RibasimTestbench : Project ({ buildType(IntegrationTest_Windows) template(IntegrationTestWindows) + template(IntegrationTestLinux) }) object IntegrationTest_Windows : BuildType({ @@ -29,7 +31,7 @@ object IntegrationTest_Windows : BuildType({ branchFilter = "+:" triggerBuild = always() - withPendingChangesOnly = false + withPendingChangesOnly = true } } @@ -38,6 +40,39 @@ object IntegrationTest_Windows : BuildType({ snapshot { } + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } +}) + +object IntegrationTest_Linux : BuildType({ + templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) + name = "IntegrationTestLinux" + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } + + dependencies { + dependency(Linux_BuildRibasim) { + snapshot { + } + artifacts { id = "ARTIFACT_DEPENDENCY_570" cleanDestination = true From 392102202999c6ad70c764d27d34e38ea7f243a1 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 2 Aug 2024 09:31:29 +0200 Subject: [PATCH 15/60] fixes linux pipeline --- .teamcity/Testbench/IntegrationTestHWS.kt | 1 + 1 file changed, 1 insertion(+) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 3d9803be6..f80fdc3c0 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -13,6 +13,7 @@ object RibasimTestbench : Project ({ name = "Testbench" buildType(IntegrationTest_Windows) + buildType(IntegrationTest_Linux) template(IntegrationTestWindows) template(IntegrationTestLinux) From af54697b23775eb3e5a3d5ff5730fe00f0f098e0 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 2 Aug 2024 14:28:49 +0200 Subject: [PATCH 16/60] try matrix build --- .teamcity/Testbench/IntegrationTestHWS.kt | 84 ++++++++++++++--------- 1 file changed, 50 insertions(+), 34 deletions(-) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index f80fdc3c0..b37819e46 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -5,7 +5,9 @@ import Ribasim_Linux.Linux_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project +import jetbrains.buildServer.configs.kotlin.matrix import jetbrains.buildServer.configs.kotlin.triggers.schedule +import jetbrains.buildServer.configs.kotlin.* object RibasimTestbench : Project ({ @@ -13,48 +15,29 @@ object RibasimTestbench : Project ({ name = "Testbench" buildType(IntegrationTest_Windows) - buildType(IntegrationTest_Linux) +// buildType(IntegrationTest_Linux) template(IntegrationTestWindows) template(IntegrationTestLinux) }) object IntegrationTest_Windows : BuildType({ - templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) - name = "IntegrationTestWindows" - - triggers{ - schedule { - id = "" - schedulingPolicy = daily { - hour = 0 - } - - branchFilter = "+:" - triggerBuild = always() - withPendingChangesOnly = true + features { + matrix { + os = listOf( + value("Windows"), + value("Linux") + ) } } - dependencies { - dependency(Windows_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } + if ("teamcity.agent.jvm.os.name" == "Windows"){ + templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) + name = "IntegrationTestWindows" + } else { + templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) + name = "IntegrationTestLinux" } -}) - -object IntegrationTest_Linux : BuildType({ - templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) - name = "IntegrationTestLinux" triggers{ schedule { @@ -70,7 +53,7 @@ object IntegrationTest_Linux : BuildType({ } dependencies { - dependency(Linux_BuildRibasim) { + dependency(Windows_BuildRibasim) { snapshot { } @@ -83,4 +66,37 @@ object IntegrationTest_Linux : BuildType({ } } } -}) \ No newline at end of file +}) + +//object IntegrationTest_Linux : BuildType({ +// templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) +// name = "IntegrationTestLinux" +// +// triggers{ +// schedule { +// id = "" +// schedulingPolicy = daily { +// hour = 0 +// } +// +// branchFilter = "+:" +// triggerBuild = always() +// withPendingChangesOnly = true +// } +// } +// +// dependencies { +// dependency(Linux_BuildRibasim) { +// snapshot { +// } +// +// artifacts { +// id = "ARTIFACT_DEPENDENCY_570" +// cleanDestination = true +// artifactRules = """ +// ribasim_windows.zip!** => ribasim/build/ribasim +// """.trimIndent() +// } +// } +// } +//}) \ No newline at end of file From 2048e078c9ae894fdc6cbff5692345035f816b28 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 2 Aug 2024 14:55:09 +0200 Subject: [PATCH 17/60] reduce duplication in buildtype --- .teamcity/Templates/IntegrationTest.kt | 38 ++++++++++ .teamcity/Testbench/IntegrationTestHWS.kt | 84 ++--------------------- 2 files changed, 45 insertions(+), 77 deletions(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 40f8e7ecc..97a2de7ea 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -1,9 +1,12 @@ package Templates +import Ribasim_Windows.Windows_BuildRibasim +import Ribasim_Linux.Linux_BuildRibasim import jetbrains.buildServer.configs.kotlin.Template import jetbrains.buildServer.configs.kotlin.buildFeatures.XmlReport import jetbrains.buildServer.configs.kotlin.buildFeatures.xmlReport import jetbrains.buildServer.configs.kotlin.buildSteps.script +import jetbrains.buildServer.configs.kotlin.triggers.schedule fun generateIntegrationTestHeader(platformOs: String): String { if (platformOs == "Linux") { @@ -20,6 +23,7 @@ fun generateIntegrationTestHeader(platformOs: String): String { } open class IntegrationTest (platformOs: String) : Template() { + init { name = "IntegrationTest_${platformOs}_Template" @@ -60,6 +64,40 @@ open class IntegrationTest (platformOs: String) : Template() { failureConditions { executionTimeoutMin = 30 } + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } + + val a = if (platformOs == "Windows"){ + Windows_BuildRibasim + } else { + Linux_BuildRibasim + } + + dependencies{ + dependency(a) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } } } diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index b37819e46..d5994b3e9 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -15,88 +15,18 @@ object RibasimTestbench : Project ({ name = "Testbench" buildType(IntegrationTest_Windows) -// buildType(IntegrationTest_Linux) + buildType(IntegrationTest_Linux) template(IntegrationTestWindows) template(IntegrationTestLinux) }) object IntegrationTest_Windows : BuildType({ - features { - matrix { - os = listOf( - value("Windows"), - value("Linux") - ) - } - } - - if ("teamcity.agent.jvm.os.name" == "Windows"){ - templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) - name = "IntegrationTestWindows" - } else { - templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) - name = "IntegrationTestLinux" - } - - triggers{ - schedule { - id = "" - schedulingPolicy = daily { - hour = 0 - } - - branchFilter = "+:" - triggerBuild = always() - withPendingChangesOnly = true - } - } - - dependencies { - dependency(Windows_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } + name = "IntegrationTestWindows" + templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) }) -//object IntegrationTest_Linux : BuildType({ -// templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) -// name = "IntegrationTestLinux" -// -// triggers{ -// schedule { -// id = "" -// schedulingPolicy = daily { -// hour = 0 -// } -// -// branchFilter = "+:" -// triggerBuild = always() -// withPendingChangesOnly = true -// } -// } -// -// dependencies { -// dependency(Linux_BuildRibasim) { -// snapshot { -// } -// -// artifacts { -// id = "ARTIFACT_DEPENDENCY_570" -// cleanDestination = true -// artifactRules = """ -// ribasim_windows.zip!** => ribasim/build/ribasim -// """.trimIndent() -// } -// } -// } -//}) \ No newline at end of file +object IntegrationTest_Linux : BuildType({ + templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) + name = "IntegrationTestLinux" +}) \ No newline at end of file From 7d6f9d68285489d52c39b4bd4844d79b36fcb1af Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 11:26:03 +0200 Subject: [PATCH 18/60] cherrypick restructure test group --- core/regression_test/regression_test.jl | 300 ++++++++++++++++++++++++ core/test/runtests.jl | 2 + 2 files changed, 302 insertions(+) create mode 100644 core/regression_test/regression_test.jl diff --git a/core/regression_test/regression_test.jl b/core/regression_test/regression_test.jl new file mode 100644 index 000000000..b77b4a833 --- /dev/null +++ b/core/regression_test/regression_test.jl @@ -0,0 +1,300 @@ +@testitem "regression_ode_solvers_trivial" begin + using SciMLBase: successful_retcode + using Tables: Tables + using Tables.DataAPI: nrow + using Dates: DateTime + import Arrow + using Ribasim: get_tstops, tsaves + + toml_path = normpath(@__DIR__, "../../generated_testmodels/trivial/ribasim.toml") + @test ispath(toml_path) + + # There is no control. That means we don't write the control.arrow, + # and we remove it if it exists. + control_path = normpath(dirname(toml_path), "results/control.arrow") + mkpath(dirname(control_path)) + touch(control_path) + @test ispath(control_path) + config = Ribasim.Config(toml_path) + + solver_list = + ["QNDF", "Rosenbrock23", "TRBDF2", "Rodas5", "KenCarp4", "Tsit5", "ImplicitEuler"] + sparse_on = [true, false] + autodiff_on = [true, false] + + @testset "$solver" for solver in solver_list + @testset "sparse density is $sparse_on_off" for sparse_on_off in sparse_on + @testset "auto differentiation is $autodiff_on_off" for autodiff_on_off in + autodiff_on + config = Ribasim.Config( + toml_path; + solver_algorithm = solver, + solver_sparse = sparse_on_off, + solver_autodiff = autodiff_on_off, + ) + model = Ribasim.run(config) + @test model isa Ribasim.Model + @test successful_retcode(model) + (; p) = model.integrator + + @test !ispath(control_path) + + # read all results as bytes first to avoid memory mapping + # which can have cleanup issues due to file locking + flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) + basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) + # subgrid_bytes = read(normpath(dirname(toml_path), "results/subgrid_level.arrow")) + + flow = Arrow.Table(flow_bytes) + basin = Arrow.Table(basin_bytes) + # subgrid = Arrow.Table(subgrid_bytes) + + @testset "Results values" begin + @test basin.storage[1] ≈ 1.0 + @test basin.level[1] ≈ 0.044711584 + @test basin.storage[end] ≈ 16.530443267 + @test basin.level[end] ≈ 0.181817438 + @test flow.flow_rate[1] == basin.outflow_rate[1] + @test all(q -> abs(q) < 1e-7, basin.balance_error) + @test all(q -> abs(q) < 0.01, basin.relative_error) + end + end + end + end +end + +@testitem "regression_ode_solvers_basic" begin + using SciMLBase: successful_retcode + using Tables: Tables + using Tables.DataAPI: nrow + using Dates: DateTime + import Arrow + using Ribasim: get_tstops, tsaves + + toml_path = normpath(@__DIR__, "../../generated_testmodels/basic/ribasim.toml") + @test ispath(toml_path) + + # There is no control. That means we don't write the control.arrow, + # and we remove it if it exists. + control_path = normpath(dirname(toml_path), "results/control.arrow") + mkpath(dirname(control_path)) + touch(control_path) + @test ispath(control_path) + config = Ribasim.Config(toml_path) + + flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/basic/flow.arrow")) + basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/basic/basin.arrow")) + flow_bench = Arrow.Table(flow_bytes_bench) + basin_bench = Arrow.Table(basin_bytes_bench) + + solver_list = ["QNDF"] + sparse_on = [true, false] + autodiff_on = [true, false] + + @testset "$solver" for solver in solver_list + @testset "sparse density is $sparse_on_off" for sparse_on_off in sparse_on + @testset "auto differentiation is $autodiff_on_off" for autodiff_on_off in + autodiff_on + config = Ribasim.Config( + toml_path; + solver_algorithm = solver, + solver_sparse = sparse_on_off, + solver_autodiff = autodiff_on_off, + ) + model = Ribasim.run(config) + @test model isa Ribasim.Model + @test successful_retcode(model) + (; p) = model.integrator + + @test !ispath(control_path) + + # read all results as bytes first to avoid memory mapping + # which can have cleanup issues due to file locking + flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) + basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) + + flow = Arrow.Table(flow_bytes) + basin = Arrow.Table(basin_bytes) + + # Testbench for flow.arrow + @test flow.time == flow_bench.time + @test flow.edge_id == flow_bench.edge_id + @test flow.from_node_type == flow_bench.from_node_type + @test flow.from_node_id == flow_bench.from_node_id + @test flow.to_node_type == flow_bench.to_node_type + @test flow.to_node_id == flow_bench.to_node_id + @test all(q -> abs(q) < 0.01, flow.flow_rate - flow_bench.flow_rate) + + # Testbench for basin.arrow + @test basin.time == basin_bench.time + @test basin.node_id == basin_bench.node_id + @test all(q -> abs(q) < 1.0, basin.storage - basin_bench.storage) + @test all(q -> abs(q) < 0.5, basin.level - basin_bench.level) + @test all(q -> abs(q) < 1e-3, basin.balance_error) + @test all(q -> abs(q) < 2.5, basin.relative_error) + end + end + end +end + +@testitem "regression_ode_solvers_pid_control" begin + using SciMLBase: successful_retcode + using Tables: Tables + using Tables.DataAPI: nrow + using Dates: DateTime + import Arrow + using Ribasim: get_tstops, tsaves + + toml_path = normpath(@__DIR__, "../../generated_testmodels/pid_control/ribasim.toml") + @test ispath(toml_path) + + # There is no control. That means we don't write the control.arrow, + # and we remove it if it exists. + control_path = normpath(dirname(toml_path), "results/control.arrow") + mkpath(dirname(control_path)) + touch(control_path) + @test ispath(control_path) + config = Ribasim.Config(toml_path) + + flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/pid_control/flow.arrow")) + basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/pid_control/basin.arrow")) + flow_bench = Arrow.Table(flow_bytes_bench) + basin_bench = Arrow.Table(basin_bytes_bench) + + # TODO "Rosenbrock23" and "Rodas5" solver are resulting unsolvable gradients + solver_list = ["QNDF"] + sparse_on = [true, false] + autodiff_on = [true, false] + + @testset "$solver" for solver in solver_list + @testset "sparse density is $sparse_on_off" for sparse_on_off in sparse_on + @testset "auto differentiation is $autodiff_on_off" for autodiff_on_off in + autodiff_on + config = Ribasim.Config( + toml_path; + solver_algorithm = solver, + solver_sparse = sparse_on_off, + solver_autodiff = autodiff_on_off, + ) + model = Ribasim.run(config) + @test model isa Ribasim.Model + @test successful_retcode(model) + (; p) = model.integrator + + @test !ispath(control_path) + + # read all results as bytes first to avoid memory mapping + # which can have cleanup issues due to file locking + flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) + basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) + + flow = Arrow.Table(flow_bytes) + basin = Arrow.Table(basin_bytes) + + # Testbench for flow.arrow + @test flow.time == flow_bench.time + @test flow.edge_id == flow_bench.edge_id + @test flow.from_node_type == flow_bench.from_node_type + @test flow.from_node_id == flow_bench.from_node_id + @test flow.to_node_type == flow_bench.to_node_type + @test flow.to_node_id == flow_bench.to_node_id + @test all(q -> abs(q) < 0.01, flow.flow_rate - flow_bench.flow_rate) + + # Testbench for basin.arrow + @test basin.time == basin_bench.time + @test basin.node_id == basin_bench.node_id + @test all(q -> abs(q) < 12.0, basin.storage - basin_bench.storage) + @test all(q -> abs(q) < 0.5, basin.level - basin_bench.level) + @test all(q -> abs(q) < 1e-3, basin.balance_error) + @test all(q -> abs(q) < 2.5, basin.relative_error) + end + end + end +end + +@testitem "regression_ode_solvers_allocation" begin + using SciMLBase: successful_retcode + using Tables: Tables + using Tables.DataAPI: nrow + using Dates: DateTime + import Arrow + using Ribasim: get_tstops, tsaves + + toml_path = normpath( + @__DIR__, + "../../generated_testmodels/subnetworks_with_sources/ribasim.toml", + ) + @test ispath(toml_path) + + # There is no control. That means we don't write the control.arrow, + # and we remove it if it exists. + control_path = normpath(dirname(toml_path), "results/control.arrow") + mkpath(dirname(control_path)) + touch(control_path) + @test ispath(control_path) + config = Ribasim.Config(toml_path) + + flow_bytes_bench = + read(normpath(@__DIR__, "../../benchmark/subnetworks_with_sources/flow.arrow")) + basin_bytes_bench = + read(normpath(@__DIR__, "../../benchmark/subnetworks_with_sources/basin.arrow")) + flow_bench = Arrow.Table(flow_bytes_bench) + basin_bench = Arrow.Table(basin_bytes_bench) + + solver_list = ["QNDF"] + # false sparse or autodiff can cause large differences in result, thus removed + sparse_on = [true] + autodiff_on = [true] + + @testset "$solver" for solver in solver_list + @testset "sparse density is $sparse_on_off" for sparse_on_off in sparse_on + @testset "auto differentiation is $autodiff_on_off" for autodiff_on_off in + autodiff_on + config = Ribasim.Config( + toml_path; + solver_algorithm = solver, + solver_sparse = sparse_on_off, + solver_autodiff = autodiff_on_off, + ) + model = Ribasim.run(config) + @test model isa Ribasim.Model + @test successful_retcode(model) + (; p) = model.integrator + + @test !ispath(control_path) + + # read all results as bytes first to avoid memory mapping + # which can have cleanup issues due to file locking + flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) + basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) + + flow = Arrow.Table(flow_bytes) + basin = Arrow.Table(basin_bytes) + + # Testbench for flow.arrow + @test flow.time == flow_bench.time + @test flow.edge_id == flow_bench.edge_id + @test flow.from_node_type == flow_bench.from_node_type + @test flow.from_node_id == flow_bench.from_node_id + @test flow.to_node_type == flow_bench.to_node_type + @test flow.to_node_id == flow_bench.to_node_id + @test all(q -> abs(q) < 0.1, flow.flow_rate - flow_bench.flow_rate) + + # Testbench for basin.arrow + @test basin.time == basin_bench.time + @test basin.node_id == basin_bench.node_id + # TODO @test all(q -> abs(q) < 12.0, basin.storage - basin_bench.storage) + # TODO @test all( + # q -> abs(q) < 100.0, + # basin.storage[(end - 16):end] - basin_bench.storage[(end - 16):end], + # ) + # TODO @test all( + # q -> abs(q) < 2.0, + # basin.level[(end - 16):end] - basin_bench.level[(end - 16):end], + # ) + # TODO @test all(q -> abs(q) < 1e-1, basin.balance_error) + # TODO @test all(q -> abs(q) < 30.0, basin.relative_error) + end + end + end +end diff --git a/core/test/runtests.jl b/core/test/runtests.jl index 1677a6093..952a52809 100644 --- a/core/test/runtests.jl +++ b/core/test/runtests.jl @@ -2,6 +2,8 @@ using ReTestItems, Ribasim if in("integration", ARGS) test_type = "../integration_test" +elseif in("regression", ARGS) + test_type = "../regression_test" else test_type = "." end From de826bb83ac8dd54d5653de530b29a3f44c7d54e Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 12:00:40 +0200 Subject: [PATCH 19/60] regression pipeline for ODE solver is up --- .teamcity/Ribasim/Project.kt | 6 +- .teamcity/Templates/RegressionTest.kt | 105 ++++++++++++++++++ .teamcity/Testbench/IntegrationTestHWS.kt | 11 +- .teamcity/Testbench/RegressionTestODESolve.kt | 28 +++++ 4 files changed, 140 insertions(+), 10 deletions(-) create mode 100644 .teamcity/Templates/RegressionTest.kt create mode 100644 .teamcity/Testbench/RegressionTestODESolve.kt diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 753d0d5b2..2ff6fa07d 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -6,8 +6,9 @@ import Ribasim.buildTypes.Ribasim_MakeQgisPlugin import Ribasim.vcsRoots.Ribasim import Ribasim_Linux.RibasimLinuxProject import Ribasim_Windows.RibasimWindowsProject -import Testbench.RibasimTestbench +import Testbench.IntegrationTestHWS import Templates.* +import Testbench.RegressionTestODESolve import jetbrains.buildServer.configs.kotlin.Project import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage import jetbrains.buildServer.configs.kotlin.projectFeatures.awsConnection @@ -66,5 +67,6 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) - subProject(RibasimTestbench) + subProject(IntegrationTestHWS) + subProject(RegressionTestODESolve) }) diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt new file mode 100644 index 000000000..fddb79aaf --- /dev/null +++ b/.teamcity/Templates/RegressionTest.kt @@ -0,0 +1,105 @@ +package Templates + +import Ribasim_Windows.Windows_BuildRibasim +import Ribasim_Linux.Linux_BuildRibasim +import jetbrains.buildServer.configs.kotlin.Template +import jetbrains.buildServer.configs.kotlin.buildFeatures.XmlReport +import jetbrains.buildServer.configs.kotlin.buildFeatures.xmlReport +import jetbrains.buildServer.configs.kotlin.buildSteps.script +import jetbrains.buildServer.configs.kotlin.triggers.schedule + +fun generateRegressionTestHeader(platformOs: String): String { + if (platformOs == "Linux") { + return """ + #!/bin/bash + # black magic + source /usr/share/Modules/init/bash + + module load pixi + """.trimIndent() + System.lineSeparator() + } + + return "" +} + +open class RegressionTest (platformOs: String) : Template() { + + init { + name = "RegressionTest_${platformOs}_Template" + + artifactRules = """ + + + """.trimIndent() + + vcs { + root(Ribasim.vcsRoots.Ribasim, ". => ribasim") + cleanCheckout = true + } + + val header = generateRegressionTestHeader(platformOs) + + steps { + script { + name = "Set up pixi" + id = "RUNNER_1509" + workingDir = "ribasim" + scriptContent = header + + """ + pixi --version + pixi run install-ci + """.trimIndent() + } + script { + name = "Run integration tests" + id = "RUNNER_1511" + workingDir = "ribasim" + scriptContent = header + + """ + pixi run test-ribasim-regression + """.trimIndent() + } + } + + failureConditions { + executionTimeoutMin = 30 + } + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } + + val a = if (platformOs == "Windows"){ + Windows_BuildRibasim + } else { + Linux_BuildRibasim + } + + dependencies{ + dependency(a) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } + } +} + +object RegressionTestWindows : RegressionTest("Windows") +object RegressionTestLinux : RegressionTest("Linux") \ No newline at end of file diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index d5994b3e9..032cfc112 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,18 +1,13 @@ package Testbench -import Ribasim_Windows.Windows_BuildRibasim -import Ribasim_Linux.Linux_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project -import jetbrains.buildServer.configs.kotlin.matrix -import jetbrains.buildServer.configs.kotlin.triggers.schedule -import jetbrains.buildServer.configs.kotlin.* -object RibasimTestbench : Project ({ - id("Testbench") - name = "Testbench" +object IntegrationTestHWS : Project ({ + id("IntegrationTestHWS") + name = "IntegrationTestHWS" buildType(IntegrationTest_Windows) buildType(IntegrationTest_Linux) diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt new file mode 100644 index 000000000..ce90bf310 --- /dev/null +++ b/.teamcity/Testbench/RegressionTestODESolve.kt @@ -0,0 +1,28 @@ +package Testbench + +import Ribasim_Windows.Windows_BuildRibasim +import Ribasim_Linux.Linux_BuildRibasim +import Templates.* +import jetbrains.buildServer.configs.kotlin.BuildType +import jetbrains.buildServer.configs.kotlin.Project +import jetbrains.buildServer.configs.kotlin.matrix +import jetbrains.buildServer.configs.kotlin.triggers.schedule +import jetbrains.buildServer.configs.kotlin.* + +object RegressionTestODESolve : Project({ + id("RegressionTestODE") + name = "RegressionTestODE" + + buildType(RegressionTest_Windows) + buildType(RegressionTest_Linux) +}) + +object RegressionTest_Windows : BuildType({ + name = "RegressionTestWindows" + templates(WindowsAgent, GithubCommitStatusIntegration, RegressionTestWindows) +}) + +object RegressionTest_Linux : BuildType({ + name = "RegressionTestLinux" + templates(LinuxAgent, GithubCommitStatusIntegration, RegressionTestLinux) +}) \ No newline at end of file From 6c847d86772eceb82df9a3a959f6830670001947 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 12:53:27 +0200 Subject: [PATCH 20/60] fix artifact path --- .teamcity/Templates/IntegrationTest.kt | 21 ------------ .teamcity/Templates/RegressionTest.kt | 21 ------------ .teamcity/Testbench/IntegrationTestHWS.kt | 32 +++++++++++++++++++ .teamcity/Testbench/RegressionTestODESolve.kt | 30 +++++++++++++++++ pixi.toml | 3 ++ 5 files changed, 65 insertions(+), 42 deletions(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 97a2de7ea..5ecd647e6 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -77,27 +77,6 @@ open class IntegrationTest (platformOs: String) : Template() { withPendingChangesOnly = true } } - - val a = if (platformOs == "Windows"){ - Windows_BuildRibasim - } else { - Linux_BuildRibasim - } - - dependencies{ - dependency(a) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } } } diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index fddb79aaf..f49d6f830 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -77,27 +77,6 @@ open class RegressionTest (platformOs: String) : Template() { withPendingChangesOnly = true } } - - val a = if (platformOs == "Windows"){ - Windows_BuildRibasim - } else { - Linux_BuildRibasim - } - - dependencies{ - dependency(a) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } } } diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 032cfc112..88cb23b40 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,5 +1,7 @@ package Testbench +import Ribasim_Linux.Linux_BuildRibasim +import Ribasim_Windows.Windows_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project @@ -19,9 +21,39 @@ object IntegrationTestHWS : Project ({ object IntegrationTest_Windows : BuildType({ name = "IntegrationTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) + + dependencies{ + dependency(Windows_BuildRibasim) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } }) object IntegrationTest_Linux : BuildType({ templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) name = "IntegrationTestLinux" + + dependencies{ + dependency(Linux_BuildRibasim) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_linux.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } }) \ No newline at end of file diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt index ce90bf310..5b979f401 100644 --- a/.teamcity/Testbench/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve.kt @@ -20,9 +20,39 @@ object RegressionTestODESolve : Project({ object RegressionTest_Windows : BuildType({ name = "RegressionTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, RegressionTestWindows) + + dependencies{ + dependency(Windows_BuildRibasim) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_windows.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } }) object RegressionTest_Linux : BuildType({ name = "RegressionTestLinux" templates(LinuxAgent, GithubCommitStatusIntegration, RegressionTestLinux) + + dependencies{ + dependency(Linux_BuildRibasim) { + snapshot { + } + + artifacts { + id = "ARTIFACT_DEPENDENCY_570" + cleanDestination = true + artifactRules = """ + ribasim_linux.zip!** => ribasim/build/ribasim + """.trimIndent() + } + } + } }) \ No newline at end of file diff --git a/pixi.toml b/pixi.toml index ddfb12539..ab6e221a8 100644 --- a/pixi.toml +++ b/pixi.toml @@ -87,6 +87,9 @@ test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test()' test-ribasim-core-cov = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test(coverage=true, julia_args=[\"--check-bounds=yes\"])'", depends_on = [ "generate-testmodels", ] } +test-ribasim-regression ={ cmd = "julia --project=core --eval 'using Pkg; Pkg.test(julia_args=[\"--check-bounds=yes\"], test_args=[\"regression\"])'", depends_on = [ + "generate-testmodels", +] } generate-testmodels = { cmd = "python utils/generate-testmodels.py", inputs = [ "python/ribasim", "python/ribasim_testmodels", From 2fe24edca0b8311079b5ab3b4f32bd6f4331e943 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 13:04:28 +0200 Subject: [PATCH 21/60] adding benchmark --- benchmark/basic/basin.arrow | Bin 0 -> 85058 bytes benchmark/basic/flow.arrow | Bin 0 -> 52082 bytes benchmark/pid_control/basin.arrow | Bin 0 -> 19346 bytes benchmark/pid_control/flow.arrow | Bin 0 -> 14482 bytes benchmark/subnetworks_with_sources/basin.arrow | Bin 0 -> 41714 bytes benchmark/subnetworks_with_sources/flow.arrow | Bin 0 -> 31874 bytes 6 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 benchmark/basic/basin.arrow create mode 100644 benchmark/basic/flow.arrow create mode 100644 benchmark/pid_control/basin.arrow create mode 100644 benchmark/pid_control/flow.arrow create mode 100644 benchmark/subnetworks_with_sources/basin.arrow create mode 100644 benchmark/subnetworks_with_sources/flow.arrow diff --git a/benchmark/basic/basin.arrow b/benchmark/basic/basin.arrow new file mode 100644 index 0000000000000000000000000000000000000000..4f9591384a0f420cfb0ea928f550a9d7a8085978 GIT binary patch literal 85058 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z7&xbF4sm2tnshI^Hq=Onb3+=^$F0Jq(PAgbrA8{LFKExJDoKfKFjvK9GFvxTh>dV! zDP!9wtXs1@&S?{3NCNheUVtS*#rVHQFk~qR?tNjZ)>Tx7e zZfjml){Z_0K9P*cF@=JGL>pPB!s+Dtwbq3wl%u?rz5i~j@DsLb7%&;PpfRu1A*ppq zyo-;v+_}%_FE4FkK>)g*n=X`ZvE@nud#L)A#`Rm*?iB17+=b!9B*r1VBjRa)IYh-5 zyXCaO3DzEJv*(3OPRdGy55hPBQ}D!AD|v1udZKrY*MNgy%6iWY|2w3IeR8p#1!l@2 zTvCh5hcm}x)0AaE{tfo?0Q&O@9H1+Ow==C<$=Ad&afD%40?_;T^#$460H%w_&aQ;C zoMB-@f`YoM?4#V$Ladk7yy0~8*E`S-tC%WQ+5-v82B1M#ji|y%V5Ct?UGdJ{LgsH$ zvZ_Du5DTSvW3~y(3;6NYb{#<4AW$c8;yRpJiXv`}sju8v!`ZBPHVyk@?N_jaY)&)Y z00{L9;p=);v*m#$5^Kg}J{iMSozn@sZ}8DNJpV9{yir7AHhv!-+4+cV^>35JFBsUAx+yD>{4Q#ohL9*e=nz)0LNTgxqY+-(>k22Z@ zj%9!Xsz!qyV>Nan1(2oQYqPt@IHd9VWOyp9%=*L5SL_FbofGAzpRK;yr6ZS&LL~@i8)vc9xuvP_VE42wUhpF)#w_C z*6wnsOj|(LH(aZe@ZYo!bg`X)KfHsF>%-!^eqCoY?}rsv?lZh&oHSATbL%CeC7uxK zk?eax9tc|;^Ho$USlIJ@tMc$F-&rU|M&?1=jr?3&4alA^C$k#au Date: Mon, 5 Aug 2024 13:11:23 +0200 Subject: [PATCH 22/60] fix templates --- .teamcity/Testbench/RegressionTestODESolve.kt | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt index 5b979f401..861d83cd2 100644 --- a/.teamcity/Testbench/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve.kt @@ -15,6 +15,9 @@ object RegressionTestODESolve : Project({ buildType(RegressionTest_Windows) buildType(RegressionTest_Linux) + + template(RegressionTestWindows) + template(RegressionTestLinux) }) object RegressionTest_Windows : BuildType({ From 64de8b02f8ac836f6f2a8ae6f2eb4d972b99dc21 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 13:26:10 +0200 Subject: [PATCH 23/60] try this --- .teamcity/Ribasim/Project.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 2ff6fa07d..d339e4302 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -68,5 +68,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) subProject(IntegrationTestHWS) - subProject(RegressionTestODESolve) +// subProject(RegressionTestODESolve) }) From 281e73628d0a1dc2ff209c13d57276e07f9d213f Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 13:37:56 +0200 Subject: [PATCH 24/60] change name for two pipelines --- .teamcity/Ribasim/Project.kt | 6 +++--- .teamcity/Testbench/IntegrationTestHWS.kt | 2 +- .teamcity/Testbench/RegressionTestODESolve.kt | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index d339e4302..12ff65976 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -6,9 +6,9 @@ import Ribasim.buildTypes.Ribasim_MakeQgisPlugin import Ribasim.vcsRoots.Ribasim import Ribasim_Linux.RibasimLinuxProject import Ribasim_Windows.RibasimWindowsProject -import Testbench.IntegrationTestHWS +import Testbench_Integration.IntegrationTestHWS import Templates.* -import Testbench.RegressionTestODESolve +import Testbench_Regression.RegressionTestODESolve import jetbrains.buildServer.configs.kotlin.Project import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage import jetbrains.buildServer.configs.kotlin.projectFeatures.awsConnection @@ -68,5 +68,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) subProject(IntegrationTestHWS) -// subProject(RegressionTestODESolve) + subProject(RegressionTestODESolve) }) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 88cb23b40..92a40c88b 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,4 +1,4 @@ -package Testbench +package Testbench_Integration import Ribasim_Linux.Linux_BuildRibasim import Ribasim_Windows.Windows_BuildRibasim diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt index 861d83cd2..0830a4efd 100644 --- a/.teamcity/Testbench/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve.kt @@ -1,4 +1,4 @@ -package Testbench +package Testbench_Regression import Ribasim_Windows.Windows_BuildRibasim import Ribasim_Linux.Linux_BuildRibasim From 717d34fe5c0f06af792ec2d4bd9b80b1048def65 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 13:45:04 +0200 Subject: [PATCH 25/60] try restructure --- .teamcity/Ribasim/Project.kt | 6 ++---- .teamcity/Testbench/IntegrationTestHWS.kt | 7 +++++-- .teamcity/Testbench/RegressionTestODESolve.kt | 2 +- 3 files changed, 8 insertions(+), 7 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 12ff65976..e8835356c 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -6,9 +6,8 @@ import Ribasim.buildTypes.Ribasim_MakeQgisPlugin import Ribasim.vcsRoots.Ribasim import Ribasim_Linux.RibasimLinuxProject import Ribasim_Windows.RibasimWindowsProject -import Testbench_Integration.IntegrationTestHWS import Templates.* -import Testbench_Regression.RegressionTestODESolve +import Testbench.Testbench import jetbrains.buildServer.configs.kotlin.Project import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage import jetbrains.buildServer.configs.kotlin.projectFeatures.awsConnection @@ -67,6 +66,5 @@ object Project : Project({ subProject(RibasimLinuxProject) subProject(RibasimWindowsProject) - subProject(IntegrationTestHWS) - subProject(RegressionTestODESolve) + subProject(Testbench) }) diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt index 92a40c88b..77d4a6238 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS.kt @@ -1,4 +1,4 @@ -package Testbench_Integration +package Testbench import Ribasim_Linux.Linux_BuildRibasim import Ribasim_Windows.Windows_BuildRibasim @@ -6,7 +6,10 @@ import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project - +object Testbench : Project({ + subProject(IntegrationTestHWS) + subProject(RegressionTestODESolve) +}) object IntegrationTestHWS : Project ({ id("IntegrationTestHWS") name = "IntegrationTestHWS" diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt index 0830a4efd..861d83cd2 100644 --- a/.teamcity/Testbench/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve.kt @@ -1,4 +1,4 @@ -package Testbench_Regression +package Testbench import Ribasim_Windows.Windows_BuildRibasim import Ribasim_Linux.Linux_BuildRibasim From b811ec3d645ac9459a4f08ce79ca078af69b7c3f Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 13:53:44 +0200 Subject: [PATCH 26/60] try restructure 2 --- .../IntegrationTestHWS.kt | 6 +- .../RegressionTestODESolve.kt | 2 +- .teamcity/Testbench/Testbench.kt | 61 +++++++++++++++++++ 3 files changed, 63 insertions(+), 6 deletions(-) rename .teamcity/Testbench/{ => IntegrationTestHWS}/IntegrationTestHWS.kt (92%) rename .teamcity/Testbench/{ => RegressionTestODESolve}/RegressionTestODESolve.kt (97%) create mode 100644 .teamcity/Testbench/Testbench.kt diff --git a/.teamcity/Testbench/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt similarity index 92% rename from .teamcity/Testbench/IntegrationTestHWS.kt rename to .teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt index 77d4a6238..a61e82608 100644 --- a/.teamcity/Testbench/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt @@ -1,4 +1,4 @@ -package Testbench +package Testbench.IntegrationTestHWS import Ribasim_Linux.Linux_BuildRibasim import Ribasim_Windows.Windows_BuildRibasim @@ -6,10 +6,6 @@ import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project -object Testbench : Project({ - subProject(IntegrationTestHWS) - subProject(RegressionTestODESolve) -}) object IntegrationTestHWS : Project ({ id("IntegrationTestHWS") name = "IntegrationTestHWS" diff --git a/.teamcity/Testbench/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt similarity index 97% rename from .teamcity/Testbench/RegressionTestODESolve.kt rename to .teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt index 861d83cd2..c1be553da 100644 --- a/.teamcity/Testbench/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt @@ -1,4 +1,4 @@ -package Testbench +package Testbench.RegressionTestODESolve import Ribasim_Windows.Windows_BuildRibasim import Ribasim_Linux.Linux_BuildRibasim diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt new file mode 100644 index 000000000..937290bdd --- /dev/null +++ b/.teamcity/Testbench/Testbench.kt @@ -0,0 +1,61 @@ +package Testbench + +import Templates.* +import Testbench.IntegrationTestHWS.IntegrationTestHWS +import Testbench.RegressionTestODESolve.RegressionTestODESolve +import jetbrains.buildServer.configs.kotlin.Project + +object Testbench : Project({ + subProject(IntegrationTestHWS) + subProject(RegressionTestODESolve) +}) +//object IntegrationTestHWS : Project ({ +// id("IntegrationTestHWS") +// name = "IntegrationTestHWS" +// +// buildType(IntegrationTest_Windows) +// buildType(IntegrationTest_Linux) +// +// template(IntegrationTestWindows) +// template(IntegrationTestLinux) +//}) +// +//object IntegrationTest_Windows : BuildType({ +// name = "IntegrationTestWindows" +// templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) +// +// dependencies{ +// dependency(Windows_BuildRibasim) { +// snapshot { +// } +// +// artifacts { +// id = "ARTIFACT_DEPENDENCY_570" +// cleanDestination = true +// artifactRules = """ +// ribasim_windows.zip!** => ribasim/build/ribasim +// """.trimIndent() +// } +// } +// } +//}) +// +//object IntegrationTest_Linux : BuildType({ +// templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) +// name = "IntegrationTestLinux" +// +// dependencies{ +// dependency(Linux_BuildRibasim) { +// snapshot { +// } +// +// artifacts { +// id = "ARTIFACT_DEPENDENCY_570" +// cleanDestination = true +// artifactRules = """ +// ribasim_linux.zip!** => ribasim/build/ribasim +// """.trimIndent() +// } +// } +// } +//}) \ No newline at end of file From d79907e92c0e40feb1607cf2c4250f71579027d1 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 14:02:52 +0200 Subject: [PATCH 27/60] add name field --- .teamcity/Testbench/Testbench.kt | 1 + 1 file changed, 1 insertion(+) diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt index 937290bdd..328da8b8a 100644 --- a/.teamcity/Testbench/Testbench.kt +++ b/.teamcity/Testbench/Testbench.kt @@ -6,6 +6,7 @@ import Testbench.RegressionTestODESolve.RegressionTestODESolve import jetbrains.buildServer.configs.kotlin.Project object Testbench : Project({ + name = "Testbench" subProject(IntegrationTestHWS) subProject(RegressionTestODESolve) }) From 1d6d873661af65c8d85ad1f7f0aec88895b58a5e Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 5 Aug 2024 15:07:17 +0200 Subject: [PATCH 28/60] delete comments --- .teamcity/Testbench/Testbench.kt | 52 +- pixi.lock | 1733 ++++++++++++++++++++++-------- 2 files changed, 1266 insertions(+), 519 deletions(-) diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt index 328da8b8a..2a3c8dd9a 100644 --- a/.teamcity/Testbench/Testbench.kt +++ b/.teamcity/Testbench/Testbench.kt @@ -9,54 +9,4 @@ object Testbench : Project({ name = "Testbench" subProject(IntegrationTestHWS) subProject(RegressionTestODESolve) -}) -//object IntegrationTestHWS : Project ({ -// id("IntegrationTestHWS") -// name = "IntegrationTestHWS" -// -// buildType(IntegrationTest_Windows) -// buildType(IntegrationTest_Linux) -// -// template(IntegrationTestWindows) -// template(IntegrationTestLinux) -//}) -// -//object IntegrationTest_Windows : BuildType({ -// name = "IntegrationTestWindows" -// templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) -// -// dependencies{ -// dependency(Windows_BuildRibasim) { -// snapshot { -// } -// -// artifacts { -// id = "ARTIFACT_DEPENDENCY_570" -// cleanDestination = true -// artifactRules = """ -// ribasim_windows.zip!** => ribasim/build/ribasim -// """.trimIndent() -// } -// } -// } -//}) -// -//object IntegrationTest_Linux : BuildType({ -// templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) -// name = "IntegrationTestLinux" -// -// dependencies{ -// dependency(Linux_BuildRibasim) { -// snapshot { -// } -// -// artifacts { -// id = "ARTIFACT_DEPENDENCY_570" -// cleanDestination = true -// artifactRules = """ -// ribasim_linux.zip!** => ribasim/build/ribasim -// """.trimIndent() -// } -// } -// } -//}) \ No newline at end of file +}) \ No newline at end of file diff --git a/pixi.lock b/pixi.lock index 2aae0e87c..0ef65c23f 100644 --- a/pixi.lock +++ b/pixi.lock @@ -361,24 +361,23 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/appnope-0.1.4-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-auth-0.7.22-he52cbe7_7.conda - - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-cal-0.7.0-hd73d8db_0.conda - - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-common-0.9.23-hfdf4475_0.conda - - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-compression-0.2.18-hd73d8db_7.conda - - conda: 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__osx >=11.0 + - __glibc >=2.17,<3.0.a0 - exiv2 >=0.28.3,<0.29.0a0 - future - gdal @@ -32615,21 +33376,21 @@ packages: - httplib2 - icu >=73.2,<74.0a0 - jinja2 - - khronos-opencl-icd-loader >=2023.4.17 - laz-perf - - libcxx >=16 - libexpat >=2.6.2,<3.0a0 + - libgcc-ng >=12 - libgdal >=3.9.1,<3.10.0a0 - libpq >=16.3,<17.0a0 - libprotobuf >=4.25.3,<4.25.4.0a0 - libspatialindex >=2.0.0,<2.0.1.0a0 - libspatialite >=5.1.0,<5.2.0a0 - libsqlite >=3.46.0,<4.0a0 - - libtasn1 >=4.19.0,<5.0a0 + - libstdcxx-ng >=12 - libzip >=1.10.1,<2.0a0 - markupsafe - mock - nose2 + - ocl-icd >=2.3.2,<3.0a0 - owslib - pdal >=2.7.2,<2.8.0a0 - plotly @@ -32642,7 +33403,6 @@ packages: - pyqt5-sip - pyqtwebkit - python >=3.12,<3.13.0a0 - - python >=3.12,<3.13.0a0 *_cpython - python-dateutil - python_abi 3.12.* *_cp312 - pytz @@ -32662,20 +33422,19 @@ packages: license: GPL-2.0-only purls: - pkg:pypi/future?source=conda-forge-mapping - size: 74897720 - timestamp: 1720491235124 + size: 94772695 + timestamp: 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size: 74897720 + timestamp: 1720491235124 - kind: conda name: qgis version: 3.38.0 @@ -35108,23 +35868,24 @@ packages: - kind: conda name: shapely version: 2.0.4 - build: py312h594820c_2 - build_number: 2 + build: py312h3daf033_1 + build_number: 1 subdir: osx-64 - url: https://conda.anaconda.org/conda-forge/osx-64/shapely-2.0.4-py312h594820c_2.conda - sha256: f012554e11f332d4b2f69211a93906ff5086c89b5494396a0b819ff4fee9240e - md5: e13fa66eb9191a1594a9119ebf8a729f + url: https://conda.anaconda.org/conda-forge/osx-64/shapely-2.0.4-py312h3daf033_1.conda + sha256: 1c0cb105fd5b3714d11286657010a2cd8eba76d8404c0d33ae3cd57e5e494214 + md5: 901432253d406a9c017b6ae26b121581 depends: - __osx >=10.13 - - geos >=3.12.2,<3.12.3.0a0 + - geos >=3.12.1,<3.12.2.0a0 - numpy >=1.19,<3 - python >=3.12,<3.13.0a0 - python_abi 3.12.* *_cp312 license: BSD-3-Clause + license_family: BSD purls: - pkg:pypi/shapely?source=conda-forge-mapping - size: 536177 - timestamp: 1720349055624 + size: 536089 + timestamp: 1715876738481 - kind: conda name: shapely version: 2.0.4 @@ -35958,6 +36719,42 @@ packages: - pkg:pypi/threadpoolctl?source=conda-forge-mapping size: 23548 timestamp: 1714400228771 +- kind: conda + name: tiledb + version: 2.22.0 + build: hf873bf7_3 + build_number: 3 + subdir: osx-64 + url: https://conda.anaconda.org/conda-forge/osx-64/tiledb-2.22.0-hf873bf7_3.conda + sha256: f5af879cb028ce11813faae8455df349b3fc1577577a67d961778602d45e972b + md5: fff2d61b684227cdebfdb1ab36dc996f + depends: + - __osx >=10.13 + - aws-crt-cpp >=0.26.8,<0.26.9.0a0 + - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 + - azure-core-cpp >=1.11.1,<1.11.2.0a0 + - azure-identity-cpp >=1.6.0,<1.6.1.0a0 + - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 + - azure-storage-common-cpp >=12.5.0,<12.5.1.0a0 + - bzip2 >=1.0.8,<2.0a0 + - fmt >=10.2.1,<11.0a0 + - libabseil * cxx17* + - libabseil >=20240116.2,<20240117.0a0 + - libcurl >=8.7.1,<9.0a0 + - libcxx >=16 + - libgoogle-cloud >=2.23.0,<2.24.0a0 + - libgoogle-cloud-storage >=2.23.0,<2.24.0a0 + - libwebp-base >=1.4.0,<2.0a0 + - libzlib >=1.2.13,<2.0.0a0 + - lz4-c >=1.9.3,<1.10.0a0 + - openssl >=3.3.0,<4.0a0 + - spdlog >=1.13.0,<1.14.0a0 + - zstd >=1.5.6,<1.6.0a0 + license: MIT + license_family: MIT + purls: [] + size: 3929120 + timestamp: 1715360383493 - kind: conda name: tiledb version: 2.24.2 From c6b484cd744c2e1964d45d00f256fabb44b3b919 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Tue, 6 Aug 2024 16:57:44 +0200 Subject: [PATCH 29/60] update documentation --- docs/_quarto.yml | 1 + docs/dev/benchmark.qmd | 39 +++++++++++++++++++++++++++++++++++++++ 2 files changed, 40 insertions(+) create mode 100644 docs/dev/benchmark.qmd diff --git a/docs/_quarto.yml b/docs/_quarto.yml index 0a69bdbe5..00e76e482 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -88,6 +88,7 @@ website: contents: - dev/index.qmd - dev/core.qmd + - dev/benchmark.qmd - dev/addnode.qmd - dev/python.qmd - dev/qgis.qmd diff --git a/docs/dev/benchmark.qmd b/docs/dev/benchmark.qmd new file mode 100644 index 000000000..3b67717b7 --- /dev/null +++ b/docs/dev/benchmark.qmd @@ -0,0 +1,39 @@ +--- +title: "Benchmark" +--- + +This document describe how the benchmarking and performance testing of Ribasim is handled. In Ribasim, the benchmarking includes and regression tests on the testmodels and regressive performent tests on the production models. + +The idea of regression tests on the testmodels is to run models with various solvers, run models with a sparse Jacobian and a dense one and compare the outputs. +It will possibly involve production model in the future. +And runtime performance tests is lined up for next step (in [issue #1698](https://github.com/Deltares/Ribasim/issues/1698)). + +The idea of regressive performance tests on the production models is to test the performance of running the production models. +It will report if the new changes of the code decrease the performance of the model or result in failed runs. + +# Benchmarking of the test models +## Benchmark the ODE solvers +The benchmarking of the ODE solvers is done by running the test models with different ODE solvers and solver settings and compare the output with the benchmark. + +The settings include the true and false of jacobian density and auto differentiation. Currently, 4 model is chosen to undergo the regression tests. They are `trivial`, `basic`, `pid_control` and `subnetwork_with_sources`. + +The current benchmark is the output files of a stable run of the test models with the default (`QNDF`) solver, with default settings. +The output files `basin.arrow` and `flow.arrow` are used for comparison. +Different margins are set for the comparison of the outputs, and the benchmark is considered passed if the output is within the margin. +Since we are still in the process of evaluating the performance of different solvers, the margin is subject to change. + +The regression tests are run on a weekly basis. + +## Benchmark the rest of the test models +TODO, and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. + +## Benchmark of the rest of ODE solvers +TODO, [#issue 1658](https://github.com/Deltares/Ribasim/issues/1658), and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. + +# Benchmarking of the production model +Regressive performance tests on the production models are done by running the production models with the new changes of the code and compare the runtime performance with the benchmark. +The current benchmark is the output files of a stable run of the production models with the default (`QNDF`) solver. +The output file "basin_state.arrow" which records the end states of the basin is used for comparison. +Since the development of the model is still ongoing, the benchmark is subject to change. + +The regressive performance tests are currently run on a weekly basis. When the development of the model is more stable, the tests will be run more frequently. From ab7944eaad1c2af0c2497536de23d03733e87703 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Tue, 6 Aug 2024 17:01:54 +0200 Subject: [PATCH 30/60] correct typos and grammar error --- docs/dev/benchmark.qmd | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/docs/dev/benchmark.qmd b/docs/dev/benchmark.qmd index 3b67717b7..63ca66911 100644 --- a/docs/dev/benchmark.qmd +++ b/docs/dev/benchmark.qmd @@ -2,22 +2,22 @@ title: "Benchmark" --- -This document describe how the benchmarking and performance testing of Ribasim is handled. In Ribasim, the benchmarking includes and regression tests on the testmodels and regressive performent tests on the production models. +This document describes how the benchmarking and performance testing of Ribasim is handled. In Ribasim, the benchmarking includes and regression tests on the test models and regressive performance tests on the production models. -The idea of regression tests on the testmodels is to run models with various solvers, run models with a sparse Jacobian and a dense one and compare the outputs. -It will possibly involve production model in the future. -And runtime performance tests is lined up for next step (in [issue #1698](https://github.com/Deltares/Ribasim/issues/1698)). +The idea of regression tests on the test models is to run models with various solvers, run models with a sparse Jacobian and a dense one and compare the outputs. +It will possibly involve production models in the future. +And runtime performance test is lined up for the next step (in [issue #1698](https://github.com/Deltares/Ribasim/issues/1698)). The idea of regressive performance tests on the production models is to test the performance of running the production models. -It will report if the new changes of the code decrease the performance of the model or result in failed runs. +It will report if the new changes in the code decrease the model's performance or result in failed runs. # Benchmarking of the test models ## Benchmark the ODE solvers -The benchmarking of the ODE solvers is done by running the test models with different ODE solvers and solver settings and compare the output with the benchmark. +The benchmarking of the ODE solvers is done by running the test models with different ODE solvers and solver settings and comparing the output with the benchmark. -The settings include the true and false of jacobian density and auto differentiation. Currently, 4 model is chosen to undergo the regression tests. They are `trivial`, `basic`, `pid_control` and `subnetwork_with_sources`. +The settings include the true and false of jacobian density and auto differentiation. Currently, 4 models are chosen to undergo the regression tests. They are `trivial`, `basic`, `pid_control` and `subnetwork_with_sources`. -The current benchmark is the output files of a stable run of the test models with the default (`QNDF`) solver, with default settings. +The current benchmark is the output files of a stable run of the test models with the default (`QNDF`) solver with default settings. The output files `basin.arrow` and `flow.arrow` are used for comparison. Different margins are set for the comparison of the outputs, and the benchmark is considered passed if the output is within the margin. Since we are still in the process of evaluating the performance of different solvers, the margin is subject to change. @@ -27,11 +27,11 @@ The regression tests are run on a weekly basis. ## Benchmark the rest of the test models TODO, and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. -## Benchmark of the rest of ODE solvers +## Benchmark of the rest of the ODE solvers TODO, [#issue 1658](https://github.com/Deltares/Ribasim/issues/1658), and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. # Benchmarking of the production model -Regressive performance tests on the production models are done by running the production models with the new changes of the code and compare the runtime performance with the benchmark. +Regressive performance tests on the production models are done by running the production models with the new changes of the code and comparing the runtime performance with the benchmark. The current benchmark is the output files of a stable run of the production models with the default (`QNDF`) solver. The output file "basin_state.arrow" which records the end states of the basin is used for comparison. Since the development of the model is still ongoing, the benchmark is subject to change. From 2a31f2b2bc78240eda8c712232ed0a34db4655bd Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Wed, 7 Aug 2024 08:07:18 +0200 Subject: [PATCH 31/60] address comment for julia part --- core/regression_test/regression_test.jl | 58 +++---------------------- 1 file changed, 5 insertions(+), 53 deletions(-) diff --git a/core/regression_test/regression_test.jl b/core/regression_test/regression_test.jl index b77b4a833..81121def3 100644 --- a/core/regression_test/regression_test.jl +++ b/core/regression_test/regression_test.jl @@ -1,20 +1,10 @@ @testitem "regression_ode_solvers_trivial" begin using SciMLBase: successful_retcode - using Tables: Tables - using Tables.DataAPI: nrow - using Dates: DateTime import Arrow - using Ribasim: get_tstops, tsaves + using Ribasim toml_path = normpath(@__DIR__, "../../generated_testmodels/trivial/ribasim.toml") @test ispath(toml_path) - - # There is no control. That means we don't write the control.arrow, - # and we remove it if it exists. - control_path = normpath(dirname(toml_path), "results/control.arrow") - mkpath(dirname(control_path)) - touch(control_path) - @test ispath(control_path) config = Ribasim.Config(toml_path) solver_list = @@ -37,8 +27,6 @@ @test successful_retcode(model) (; p) = model.integrator - @test !ispath(control_path) - # read all results as bytes first to avoid memory mapping # which can have cleanup issues due to file locking flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) @@ -65,21 +53,11 @@ end @testitem "regression_ode_solvers_basic" begin using SciMLBase: successful_retcode - using Tables: Tables - using Tables.DataAPI: nrow - using Dates: DateTime import Arrow - using Ribasim: get_tstops, tsaves + using Ribasim toml_path = normpath(@__DIR__, "../../generated_testmodels/basic/ribasim.toml") @test ispath(toml_path) - - # There is no control. That means we don't write the control.arrow, - # and we remove it if it exists. - control_path = normpath(dirname(toml_path), "results/control.arrow") - mkpath(dirname(control_path)) - touch(control_path) - @test ispath(control_path) config = Ribasim.Config(toml_path) flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/basic/flow.arrow")) @@ -106,8 +84,6 @@ end @test successful_retcode(model) (; p) = model.integrator - @test !ispath(control_path) - # read all results as bytes first to avoid memory mapping # which can have cleanup issues due to file locking flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) @@ -139,21 +115,11 @@ end @testitem "regression_ode_solvers_pid_control" begin using SciMLBase: successful_retcode - using Tables: Tables - using Tables.DataAPI: nrow - using Dates: DateTime import Arrow - using Ribasim: get_tstops, tsaves + using Ribasim toml_path = normpath(@__DIR__, "../../generated_testmodels/pid_control/ribasim.toml") @test ispath(toml_path) - - # There is no control. That means we don't write the control.arrow, - # and we remove it if it exists. - control_path = normpath(dirname(toml_path), "results/control.arrow") - mkpath(dirname(control_path)) - touch(control_path) - @test ispath(control_path) config = Ribasim.Config(toml_path) flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/pid_control/flow.arrow")) @@ -181,8 +147,6 @@ end @test successful_retcode(model) (; p) = model.integrator - @test !ispath(control_path) - # read all results as bytes first to avoid memory mapping # which can have cleanup issues due to file locking flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) @@ -203,7 +167,7 @@ end # Testbench for basin.arrow @test basin.time == basin_bench.time @test basin.node_id == basin_bench.node_id - @test all(q -> abs(q) < 12.0, basin.storage - basin_bench.storage) + @test all(q -> abs(q) < 100.0, basin.storage - basin_bench.storage) @test all(q -> abs(q) < 0.5, basin.level - basin_bench.level) @test all(q -> abs(q) < 1e-3, basin.balance_error) @test all(q -> abs(q) < 2.5, basin.relative_error) @@ -214,24 +178,14 @@ end @testitem "regression_ode_solvers_allocation" begin using SciMLBase: successful_retcode - using Tables: Tables - using Tables.DataAPI: nrow - using Dates: DateTime import Arrow - using Ribasim: get_tstops, tsaves + using Ribasim toml_path = normpath( @__DIR__, "../../generated_testmodels/subnetworks_with_sources/ribasim.toml", ) @test ispath(toml_path) - - # There is no control. That means we don't write the control.arrow, - # and we remove it if it exists. - control_path = normpath(dirname(toml_path), "results/control.arrow") - mkpath(dirname(control_path)) - touch(control_path) - @test ispath(control_path) config = Ribasim.Config(toml_path) flow_bytes_bench = @@ -261,8 +215,6 @@ end @test successful_retcode(model) (; p) = model.integrator - @test !ispath(control_path) - # read all results as bytes first to avoid memory mapping # which can have cleanup issues due to file locking flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) From b99830ae76cafbd496f597f7acedbb2a3a5ad34f Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Wed, 7 Aug 2024 08:09:21 +0200 Subject: [PATCH 32/60] Test if build is needed for test pipeline --- .../IntegrationTestHWS/IntegrationTestHWS.kt | 32 +------------------ .../RegressionTestODESolve.kt | 30 ----------------- 2 files changed, 1 insertion(+), 61 deletions(-) diff --git a/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt index a61e82608..16978b52a 100644 --- a/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt @@ -20,39 +20,9 @@ object IntegrationTestHWS : Project ({ object IntegrationTest_Windows : BuildType({ name = "IntegrationTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) - - dependencies{ - dependency(Windows_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } }) object IntegrationTest_Linux : BuildType({ - templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) name = "IntegrationTestLinux" - - dependencies{ - dependency(Linux_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_linux.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } + templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) }) \ No newline at end of file diff --git a/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt index c1be553da..5697cec7b 100644 --- a/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt @@ -23,39 +23,9 @@ object RegressionTestODESolve : Project({ object RegressionTest_Windows : BuildType({ name = "RegressionTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, RegressionTestWindows) - - dependencies{ - dependency(Windows_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_windows.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } }) object RegressionTest_Linux : BuildType({ name = "RegressionTestLinux" templates(LinuxAgent, GithubCommitStatusIntegration, RegressionTestLinux) - - dependencies{ - dependency(Linux_BuildRibasim) { - snapshot { - } - - artifacts { - id = "ARTIFACT_DEPENDENCY_570" - cleanDestination = true - artifactRules = """ - ribasim_linux.zip!** => ribasim/build/ribasim - """.trimIndent() - } - } - } }) \ No newline at end of file From 7f81198afcc87831e0c0b984b54ff150a48cb137 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 11:28:51 +0200 Subject: [PATCH 33/60] add trigger back to pipeline --- .teamcity/Templates/IntegrationTest.kt | 12 --------- .teamcity/Templates/RegressionTest.kt | 12 --------- .../IntegrationTestHWS/IntegrationTestHWS.kt | 27 +++++++++++++++++++ .../RegressionTestODESolve.kt | 26 ++++++++++++++++++ 4 files changed, 53 insertions(+), 24 deletions(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 5ecd647e6..7cbad0330 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -65,18 +65,6 @@ open class IntegrationTest (platformOs: String) : Template() { executionTimeoutMin = 30 } - triggers{ - schedule { - id = "" - schedulingPolicy = daily { - hour = 0 - } - - branchFilter = "+:" - triggerBuild = always() - withPendingChangesOnly = true - } - } } } diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index f49d6f830..2fb278f44 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -65,18 +65,6 @@ open class RegressionTest (platformOs: String) : Template() { executionTimeoutMin = 30 } - triggers{ - schedule { - id = "" - schedulingPolicy = daily { - hour = 0 - } - - branchFilter = "+:" - triggerBuild = always() - withPendingChangesOnly = true - } - } } } diff --git a/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt index 16978b52a..2d0550957 100644 --- a/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt +++ b/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt @@ -5,6 +5,7 @@ import Ribasim_Windows.Windows_BuildRibasim import Templates.* import jetbrains.buildServer.configs.kotlin.BuildType import jetbrains.buildServer.configs.kotlin.Project +import jetbrains.buildServer.configs.kotlin.triggers.schedule object IntegrationTestHWS : Project ({ id("IntegrationTestHWS") @@ -20,9 +21,35 @@ object IntegrationTestHWS : Project ({ object IntegrationTest_Windows : BuildType({ name = "IntegrationTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, IntegrationTestWindows) + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } }) object IntegrationTest_Linux : BuildType({ name = "IntegrationTestLinux" templates(LinuxAgent, GithubCommitStatusIntegration, IntegrationTestLinux) + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } }) \ No newline at end of file diff --git a/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt index 5697cec7b..eb421f4cd 100644 --- a/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt +++ b/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt @@ -23,9 +23,35 @@ object RegressionTestODESolve : Project({ object RegressionTest_Windows : BuildType({ name = "RegressionTestWindows" templates(WindowsAgent, GithubCommitStatusIntegration, RegressionTestWindows) + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } }) object RegressionTest_Linux : BuildType({ name = "RegressionTestLinux" templates(LinuxAgent, GithubCommitStatusIntegration, RegressionTestLinux) + + triggers{ + schedule { + id = "" + schedulingPolicy = daily { + hour = 0 + } + + branchFilter = "+:" + triggerBuild = always() + withPendingChangesOnly = true + } + } }) \ No newline at end of file From b2455a0d7c410ef0018340fed2bac26e07abb98e Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 17:09:11 +0200 Subject: [PATCH 34/60] refactor pipeline --- .../Testbench/{IntegrationTestHWS => }/IntegrationTestHWS.kt | 0 .../{RegressionTestODESolve => }/RegressionTestODESolve.kt | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename .teamcity/Testbench/{IntegrationTestHWS => }/IntegrationTestHWS.kt (100%) rename .teamcity/Testbench/{RegressionTestODESolve => }/RegressionTestODESolve.kt (100%) diff --git a/.teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt b/.teamcity/Testbench/IntegrationTestHWS.kt similarity index 100% rename from .teamcity/Testbench/IntegrationTestHWS/IntegrationTestHWS.kt rename to .teamcity/Testbench/IntegrationTestHWS.kt diff --git a/.teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt b/.teamcity/Testbench/RegressionTestODESolve.kt similarity index 100% rename from .teamcity/Testbench/RegressionTestODESolve/RegressionTestODESolve.kt rename to .teamcity/Testbench/RegressionTestODESolve.kt From bc1a563a23a9b064c3a2d1dccac861a54f990310 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 17:36:18 +0200 Subject: [PATCH 35/60] test changes --- .teamcity/Testbench/Testbench.kt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt index 2a3c8dd9a..81241df87 100644 --- a/.teamcity/Testbench/Testbench.kt +++ b/.teamcity/Testbench/Testbench.kt @@ -7,6 +7,6 @@ import jetbrains.buildServer.configs.kotlin.Project object Testbench : Project({ name = "Testbench" - subProject(IntegrationTestHWS) - subProject(RegressionTestODESolve) +// subProject(IntegrationTestHWS) +// subProject(RegressionTestODESolve) }) \ No newline at end of file From c9cc0de7df2e60ddff7799d10f9dd2fa58dcc1c8 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 17:44:39 +0200 Subject: [PATCH 36/60] recover commented lines --- .teamcity/Testbench/Testbench.kt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt index 81241df87..2a3c8dd9a 100644 --- a/.teamcity/Testbench/Testbench.kt +++ b/.teamcity/Testbench/Testbench.kt @@ -7,6 +7,6 @@ import jetbrains.buildServer.configs.kotlin.Project object Testbench : Project({ name = "Testbench" -// subProject(IntegrationTestHWS) -// subProject(RegressionTestODESolve) + subProject(IntegrationTestHWS) + subProject(RegressionTestODESolve) }) \ No newline at end of file From 752c1c5e5ecfc4d315629a31c5ee01fff57d5692 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 17:48:47 +0200 Subject: [PATCH 37/60] update vcs --- .teamcity/Ribasim/vcsRoots/Ribasim.kt | 28 ++++++++++++++++----------- 1 file changed, 17 insertions(+), 11 deletions(-) diff --git a/.teamcity/Ribasim/vcsRoots/Ribasim.kt b/.teamcity/Ribasim/vcsRoots/Ribasim.kt index f94f6c0e3..35c933249 100644 --- a/.teamcity/Ribasim/vcsRoots/Ribasim.kt +++ b/.teamcity/Ribasim/vcsRoots/Ribasim.kt @@ -5,15 +5,21 @@ import jetbrains.buildServer.configs.kotlin.vcs.GitVcsRoot object Ribasim : GitVcsRoot({ name = "Ribasim" url = "https://github.com/Deltares/Ribasim" - branch = "main" - branchSpec = """ - +:refs/heads/main - +:refs/tags/* - +:refs/heads/gh-readonly-queue/* - """.trimIndent() - useTagsAsBranches = true - authMethod = password { - userName = "teamcity-deltares" - password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" - } + branch = "bench-large-model" + branchSpec = "+:refs/heads/*" }) +//object Ribasim : GitVcsRoot({ +// name = "Ribasim" +// url = "https://github.com/Deltares/Ribasim" +// branch = "main" +// branchSpec = """ +// +:refs/heads/main +// +:refs/tags/* +// +:refs/heads/gh-readonly-queue/* +// """.trimIndent() +// useTagsAsBranches = true +// authMethod = password { +// userName = "teamcity-deltares" +// password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" +// } +//}) From b497cf5d19ccc266844ce08ee21813ee817cd65b Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 17:51:40 +0200 Subject: [PATCH 38/60] add authoring method --- .teamcity/Ribasim/vcsRoots/Ribasim.kt | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.teamcity/Ribasim/vcsRoots/Ribasim.kt b/.teamcity/Ribasim/vcsRoots/Ribasim.kt index 35c933249..4a06fceb5 100644 --- a/.teamcity/Ribasim/vcsRoots/Ribasim.kt +++ b/.teamcity/Ribasim/vcsRoots/Ribasim.kt @@ -7,6 +7,11 @@ object Ribasim : GitVcsRoot({ url = "https://github.com/Deltares/Ribasim" branch = "bench-large-model" branchSpec = "+:refs/heads/*" + useTagsAsBranches = true + authMethod = password { + userName = "teamcity-deltares" + password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" + } }) //object Ribasim : GitVcsRoot({ // name = "Ribasim" From 8c1ef6ecd50e0eae367a7e878bb37b8130fbedcd Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 18:01:44 +0200 Subject: [PATCH 39/60] revert setting --- .teamcity/Ribasim/vcsRoots/Ribasim.kt | 25 +++++++------------------ 1 file changed, 7 insertions(+), 18 deletions(-) diff --git a/.teamcity/Ribasim/vcsRoots/Ribasim.kt b/.teamcity/Ribasim/vcsRoots/Ribasim.kt index 4a06fceb5..c3a650fbb 100644 --- a/.teamcity/Ribasim/vcsRoots/Ribasim.kt +++ b/.teamcity/Ribasim/vcsRoots/Ribasim.kt @@ -5,26 +5,15 @@ import jetbrains.buildServer.configs.kotlin.vcs.GitVcsRoot object Ribasim : GitVcsRoot({ name = "Ribasim" url = "https://github.com/Deltares/Ribasim" - branch = "bench-large-model" - branchSpec = "+:refs/heads/*" + branch = "main" + branchSpec = """ + +:refs/heads/main + +:refs/tags/* + +:refs/heads/gh-readonly-queue/* + """.trimIndent() useTagsAsBranches = true authMethod = password { userName = "teamcity-deltares" password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" } -}) -//object Ribasim : GitVcsRoot({ -// name = "Ribasim" -// url = "https://github.com/Deltares/Ribasim" -// branch = "main" -// branchSpec = """ -// +:refs/heads/main -// +:refs/tags/* -// +:refs/heads/gh-readonly-queue/* -// """.trimIndent() -// useTagsAsBranches = true -// authMethod = password { -// userName = "teamcity-deltares" -// password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" -// } -//}) +}) \ No newline at end of file From 7bbf010fea4c2ec81afcc776528994cbee6f83b1 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Thu, 8 Aug 2024 18:02:42 +0200 Subject: [PATCH 40/60] add white line --- .teamcity/Ribasim/vcsRoots/Ribasim.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim/vcsRoots/Ribasim.kt b/.teamcity/Ribasim/vcsRoots/Ribasim.kt index c3a650fbb..f94f6c0e3 100644 --- a/.teamcity/Ribasim/vcsRoots/Ribasim.kt +++ b/.teamcity/Ribasim/vcsRoots/Ribasim.kt @@ -16,4 +16,4 @@ object Ribasim : GitVcsRoot({ userName = "teamcity-deltares" password = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" } -}) \ No newline at end of file +}) From 2831d9feb7b978653821fab611b9f2a9c4d915d8 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 09:11:51 +0200 Subject: [PATCH 41/60] update credentials --- .teamcity/Ribasim/Project.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index e8835356c..8abafc05f 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -60,7 +60,7 @@ object Project : Project({ } credentials = accessKeys() accessKeyID = "AKIAQBIN2MPWXSD2IZ5F" - accessKey = "credentialsJSON:dba90026-9856-4f87-94d9-bab91f3f2d5c" + accessKey = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" } } From a8c670128fdb76225e19a12992fd19a4664687eb Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 09:12:50 +0200 Subject: [PATCH 42/60] Revert "update credentials" This reverts commit 2831d9feb7b978653821fab611b9f2a9c4d915d8. --- .teamcity/Ribasim/Project.kt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index 8abafc05f..e8835356c 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -60,7 +60,7 @@ object Project : Project({ } credentials = accessKeys() accessKeyID = "AKIAQBIN2MPWXSD2IZ5F" - accessKey = "credentialsJSON:abf605ce-e382-4b10-b5de-8a7640dc58d9" + accessKey = "credentialsJSON:dba90026-9856-4f87-94d9-bab91f3f2d5c" } } From 79260961231126398e70327b6235e0e80a47795e Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 09:22:40 +0200 Subject: [PATCH 43/60] update the artifact storage --- .teamcity/Ribasim/Project.kt | 26 +++++++++++++++----------- 1 file changed, 15 insertions(+), 11 deletions(-) diff --git a/.teamcity/Ribasim/Project.kt b/.teamcity/Ribasim/Project.kt index e8835356c..cbe8b72b0 100644 --- a/.teamcity/Ribasim/Project.kt +++ b/.teamcity/Ribasim/Project.kt @@ -9,10 +9,7 @@ import Ribasim_Windows.RibasimWindowsProject import Templates.* import Testbench.Testbench import jetbrains.buildServer.configs.kotlin.Project -import jetbrains.buildServer.configs.kotlin.projectFeatures.activeStorage -import jetbrains.buildServer.configs.kotlin.projectFeatures.awsConnection -import jetbrains.buildServer.configs.kotlin.projectFeatures.githubIssues -import jetbrains.buildServer.configs.kotlin.projectFeatures.s3Storage +import jetbrains.buildServer.configs.kotlin.projectFeatures.* object Project : Project({ @@ -35,21 +32,28 @@ object Project : Project({ name = "Amazon Web Services (AWS)" regionName = "eu-west-3" credentialsType = static { - accessKeyId = "AKIAQBIN2MPWXSD2IZ5F" - secretAccessKey = "credentialsJSON:dba90026-9856-4f87-94d9-bab91f3f2d5c" + accessKeyId = "KwKRzscudy3GvRB8BN1Z" + secretAccessKey = "credentialsJSON:86cbf3e5-724c-437d-9962-7a3f429b0aa2" useSessionCredentials = false - stsEndpoint = "https://sts.eu-west-3.amazonaws.com" + stsEndpoint = "https://s3-console.deltares.nl" } } - activeStorage { - id = "PROJECT_EXT_106" - activeStorageID = "s3_ribasim" - } githubIssues { id = "PROJECT_EXT_107" displayName = "Ribasim GitHub Issues" repositoryURL = "https://github.com/Deltares/Ribasim" } + s3CompatibleStorage { + id = "PROJECT_EXT_171" + accessKeyID = "KwKRzscudy3GvRB8BN1Z" + accessKey = "credentialsJSON:86cbf3e5-724c-437d-9962-7a3f429b0aa2" + endpoint = "https://s3.deltares.nl" + bucketName = "ribasim" + } + activeStorage { + id = "PROJECT_EXT_172" + activeStorageID = "PROJECT_EXT_171" + } s3Storage { id = "s3_ribasim" storageName = "s3" From 63921c63b7ad321111e3a635bc34a2fe8becce3b Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 11:14:15 +0200 Subject: [PATCH 44/60] Revert "Merge branch 'main' into bench-large-model" This reverts commit f7b9cee324b145c26530dd72951ec0a428f6e191, reversing changes made to 79260961231126398e70327b6235e0e80a47795e. --- .pre-commit-config.yaml | 4 +- .teamcity/Templates/TestDelwaqCoupling.kt | 4 +- .vscode/settings.json | 3 +- Manifest.toml | 162 +- core/Project.toml | 10 - core/ext/RibasimMakieExt.jl | 56 - core/src/Ribasim.jl | 6 - core/src/callback.jl | 25 +- core/src/config.jl | 13 +- core/src/model.jl | 1 - core/src/parameter.jl | 8 - core/src/write.jl | 28 - core/test/run_models_test.jl | 14 +- docs/guide/examples.ipynb | 41 +- docs/reference/usage.qmd | 12 - mypy.ini | 1 - open-vscode.bat | 1 - pixi.lock | 17107 ++++++++------------ python/ribasim/README.md | 4 +- python/ribasim/ribasim/geometry/edge.py | 14 +- python/ribasim/ribasim/input_base.py | 22 +- python/ribasim/ribasim/model.py | 10 +- python/ribasim_api/README.md | 2 +- python/ribasim_api/tests/test_bmi.py | 3 +- ribasim_qgis/ribasim_qgis.py | 2 +- ribasim_qgis/scripts/qgis_testrunner.py | 2 +- ribasim_qgis/tests/core/test_model.py | 2 +- ribasim_qgis/ui_tests/test_load_plugin.py | 2 +- 28 files changed, 7302 insertions(+), 10257 deletions(-) delete mode 100644 core/ext/RibasimMakieExt.jl delete mode 100644 open-vscode.bat diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 165e79145..cb7cdeac2 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -14,7 +14,7 @@ repos: exclude: '.teamcity' - id: trailing-whitespace - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.5 + rev: v0.5.0 hooks: - id: ruff types_or: [python, pyi, jupyter] @@ -26,6 +26,6 @@ repos: hooks: - id: nbstripout - repo: https://github.com/crate-ci/typos - rev: v1.23.6 + rev: v1.22.9 hooks: - id: typos diff --git a/.teamcity/Templates/TestDelwaqCoupling.kt b/.teamcity/Templates/TestDelwaqCoupling.kt index b5706648a..7ea29931f 100644 --- a/.teamcity/Templates/TestDelwaqCoupling.kt +++ b/.teamcity/Templates/TestDelwaqCoupling.kt @@ -20,7 +20,7 @@ open class TestDelwaqCoupling(platformOs: String) : Template() { workingDir = "ribasim" scriptContent = """ pixi --version - pixi run install-ci + pixi run install """.trimIndent() } script { @@ -37,4 +37,4 @@ open class TestDelwaqCoupling(platformOs: String) : Template() { } } -object TestDelwaqCouplingWindows : TestDelwaqCoupling("Windows") +object TestDelwaqCouplingWindows : TestDelwaqCoupling("Windows") \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json index f8c8eb036..c823a623f 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -23,6 +23,5 @@ "julia.lint.disabledDirs": [ ".pixi" ], - "julia.lint.run": true, - "files.insertFinalNewline": true + "julia.lint.run": true } diff --git a/Manifest.toml b/Manifest.toml index 26dd24095..34a68402a 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,12 +2,12 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "ced48539db7c5827a1e795e5349b519fb599876e" +project_hash = "1f635113c3942011817a95f3b34347acc94b7036" [[deps.ADTypes]] -git-tree-sha1 = "6778bcc27496dae5723ff37ee30af451db8b35fe" +git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.2" +version = "1.6.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -66,10 +66,10 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "5c9b74c973181571deb6442d41e5c902e6b9f38e" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.15.0" +version = "7.12.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -79,7 +79,6 @@ version = "7.15.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -91,7 +90,6 @@ version = "7.15.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -176,9 +174,9 @@ version = "0.1.13" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "7eee164f122511d3e4e1ebadb7956939ea7e1c77" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.6" +version = "1.3.5" [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] @@ -237,9 +235,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "cf30651e65a87b20b12601b91169a18838eab2df" +git-tree-sha1 = "c2663c30580894680c793d6b8043567b5f4d4878" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.16" +version = "0.15.14" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" @@ -372,10 +370,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.152.2" +version = "6.151.5" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -387,7 +385,6 @@ version = "6.152.2" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" - DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -401,15 +398,14 @@ version = "6.152.2" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.7.0" +version = "3.6.2" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -429,9 +425,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "6bd550abccb7aa156141e10d5367c580af9128af" +git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.11" +version = "0.5.9" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -508,12 +504,6 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.Expronicon]] -deps = ["MLStyle", "Pkg", "TOML"] -git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" -uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" -version = "0.8.5" - [[deps.ExproniconLite]] git-tree-sha1 = "1095361e35ea8ad9c660560df4c03c06d5244956" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" @@ -521,9 +511,9 @@ version = "0.10.11" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +git-tree-sha1 = "bd19de6fe8a3b18888f35e79832f97544684caa7" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "0.3.4" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -562,9 +552,9 @@ version = "1.11.0" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[deps.FindFirstFunctions]] -git-tree-sha1 = "fa0ba2042021409deb144f868abafde0b06be8f0" +git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.3.0" +version = "1.2.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] @@ -605,9 +595,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" +git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.12" +version = "0.4.11" [[deps.Future]] deps = ["Random"] @@ -638,15 +628,15 @@ version = "1.11.2" [[deps.HiGHS]] deps = ["HiGHS_jll", "MathOptInterface", "PrecompileTools", "SparseArrays"] -git-tree-sha1 = "477bde3ee57657239b38d3bacafcb20082d9a1b2" +git-tree-sha1 = "1042e72e93e5916bbfe034576f2fc2fae73d5ec7" uuid = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" -version = "1.9.2" +version = "1.9.1" [[deps.HiGHS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "1f240e0fb1c4cdf39bca5d3881d1758263931ccb" +git-tree-sha1 = "656db2048ed731484df16fc91e7232a190e330fb" uuid = "8fd58aa0-07eb-5a78-9b36-339c94fd15ea" -version = "1.7.2+0" +version = "1.7.1+0" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] @@ -733,10 +723,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "5fe858cb863e211c6dedc8cce2dc0752d4ab6e2b" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.51" +version = "0.4.50" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -774,9 +764,9 @@ version = "1.22.2" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "5d3a5a206297af3868151bb4a2cf27ebce46f16d" +git-tree-sha1 = "a6adc2dcfe4187c40dc7c2c9d2128e326360e90a" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.33" +version = "0.9.32" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -868,19 +858,19 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" +git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.3.0" +version = "7.2.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "00d9dc2ef7abb0575ec2b59fedbbc5685127e6ea" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "b2e2dba60642e07c062eb3143770d7e234316772" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.31.2" +version = "2.30.2" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -951,15 +941,15 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "1ce1834f9644a8f7c011eb0592b7fd6c42c90653" +git-tree-sha1 = "eeaedcf337f33c039f9f3a209a8db992deefd7e9" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "3.0.1" +version = "2.4.8" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11" +git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" -version = "1.10.0+0" +version = "1.9.4+0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -967,11 +957,6 @@ git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.2.0+0" -[[deps.MLStyle]] -git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.17" - [[deps.MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" @@ -1033,9 +1018,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "c74e5e7c5f83ccb0bca0377d316d966d296106d4" +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.9" +version = "0.7.8" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1048,9 +1033,9 @@ version = "0.2.4" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" +git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.6" +version = "1.4.5" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1132,9 +1117,9 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "a8b2d333cd90562b58b977b4033739360b37fb1f" +git-tree-sha1 = "0c5d89483f9538efedb3f1c1b72e14d5f65830b0" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.87.0" +version = "6.86.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] @@ -1191,9 +1176,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" +git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.23" +version = "0.4.22" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1243,9 +1228,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.ReTestItems]] deps = ["Dates", "Logging", "LoggingExtras", "Pkg", "Serialization", "Sockets", "Test", "TestEnv"] -git-tree-sha1 = "f4a49b06ae830ff83a8743964ed08a805f5bab20" +git-tree-sha1 = "276cb2fc9c4de5ea62fd50150d9089ab5a40781f" uuid = "817f1d60-ba6b-4fd5-9520-3cf149f6a823" -version = "1.25.0" +version = "1.24.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -1306,24 +1291,17 @@ uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" [[deps.Revise]] -deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "7b7850bb94f75762d567834d7e9802fc22d62f9c" +deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] +git-tree-sha1 = "85ddd93ea15dcd8493400600e09104a9e94bb18d" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.18" +version = "3.5.15" [[deps.Ribasim]] -deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LineSearches", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "ReadOnlyArrays", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimerOutputs", "TranscodingStreams"] +deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "ReadOnlyArrays", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" version = "2024.10.0" - [deps.Ribasim.extensions] - RibasimMakieExt = ["Makie", "DataFrames"] - - [deps.Ribasim.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" - [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" @@ -1358,10 +1336,10 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.45.3+0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7f0e208db50f5fee2386b6d8dc9608d580059331" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "4345907b161ed71358fd343f8d9d178b68bb185a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.48.1" +version = "2.43.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1390,9 +1368,9 @@ version = "0.3.8" [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" +git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.2" +version = "1.4.1" [[deps.Scratch]] deps = ["Dates"] @@ -1421,9 +1399,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" +git-tree-sha1 = "58b144f34e44252b2de0acb5a9dbbb7ea5cd75d7" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.11.0" +version = "1.10.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1490,9 +1468,9 @@ version = "2.19.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "ad048e784b816e4de5553a13f1daf148412f3dbd" +git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.6" +version = "0.3.5" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1590,9 +1568,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "2dd32da03adaf43fd91494e38ef3df0ab2e6c20e" +git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.27" +version = "0.3.26" [[deps.TOML]] deps = ["Dates"] @@ -1676,9 +1654,9 @@ uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.2.1" [[deps.Tricks]] -git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.9" +version = "0.1.8" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1723,9 +1701,9 @@ version = "1.4.2" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "18cfd00df3cbbebf8ea4ec7ea6bbceb3af716bd0" +git-tree-sha1 = "ad6944a6b3dfd8e95920e48355d3baf510319262" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.3.0" +version = "1.2.6" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] diff --git a/core/Project.toml b/core/Project.toml index cac0c9446..302293a24 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -24,7 +24,6 @@ HiGHS = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" Legolas = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd" -LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" LoggingExtras = "e6f89c97-d47a-5376-807f-9c37f3926c36" @@ -41,13 +40,6 @@ TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -[weakdeps] -DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" - -[extensions] -RibasimMakieExt = ["Makie", "DataFrames"] - [compat] Accessors = "0.1" Aqua = "0.8" @@ -73,10 +65,8 @@ IterTools = "1.4" JuMP = "1.15" Legolas = "0.5" LinearSolve = "2.24" -LineSearches = "7.2" Logging = "<0.0.1, 1" LoggingExtras = "1" -Makie = "0.21" MetaGraphsNext = "0.6, 0.7" OrdinaryDiffEq = "6.7" PreallocationTools = "0.4" diff --git a/core/ext/RibasimMakieExt.jl b/core/ext/RibasimMakieExt.jl deleted file mode 100644 index 97077bab8..000000000 --- a/core/ext/RibasimMakieExt.jl +++ /dev/null @@ -1,56 +0,0 @@ -module RibasimMakieExt -using DataFrames: DataFrame -using Makie: Figure, Axis, lines!, axislegend -using Ribasim: Ribasim, Model - -function Ribasim.plot_basin_data!(model::Model, ax::Axis, column::Symbol) - basin_data = DataFrame(Ribasim.basin_table(model)) - for node_id in unique(basin_data.node_id) - group = filter(:node_id => ==(node_id), basin_data) - lines!(ax, group.time, getproperty(group, column); label = "Basin #$node_id") - end - - axislegend(ax) - return nothing -end - -function Ribasim.plot_basin_data(model::Model) - f = Figure() - ax1 = Axis(f[1, 1]; ylabel = "level [m]") - ax2 = Axis(f[2, 1]; xlabel = "time", ylabel = "storage [m³]") - Ribasim.plot_basin_data!(model, ax1, :level) - Ribasim.plot_basin_data!(model, ax2, :storage) - f -end - -function Ribasim.plot_flow!( - model::Model, - ax::Axis, - edge_id::Int32; - skip_conservative_out = false, -) - flow_data = DataFrame(Ribasim.flow_table(model)) - flow_data = filter(:edge_id => ==(edge_id), flow_data) - first_row = first(flow_data) - # Skip outflows of conservative nodes because these are the same as the inflows - if skip_conservative_out && - Ribasim.NodeType.T(first_row.from_node_type) in Ribasim.conservative_nodetypes - return nothing - end - label = "$(first_row.from_node_type) #$(first_row.from_node_id) → $(first_row.to_node_type) #$(first_row.to_node_id)" - lines!(ax, flow_data.time, flow_data.flow_rate; label) - return nothing -end - -function Ribasim.plot_flow(model::Model) - f = Figure() - ax = Axis(f[1, 1]; xlabel = "time", ylabel = "flow rate [m³s⁻¹]") - edge_ids = unique(Ribasim.flow_table(model).edge_id) - for edge_id in edge_ids - Ribasim.plot_flow!(model, ax, edge_id; skip_conservative_out = true) - end - axislegend(ax) - f -end - -end # module RibasimMakieExt diff --git a/core/src/Ribasim.jl b/core/src/Ribasim.jl index 459a1ae73..f64aaa808 100644 --- a/core/src/Ribasim.jl +++ b/core/src/Ribasim.jl @@ -98,10 +98,4 @@ include("callback.jl") include("main.jl") include("libribasim.jl") -# Define names used in Makie extension -function plot_basin_data end -function plot_basin_data! end -function plot_flow end -function plot_flow! end - end # module Ribasim diff --git a/core/src/callback.jl b/core/src/callback.jl index 05aa766e7..927fddaf8 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -1,3 +1,4 @@ + """ Create the different callbacks that are used to store results and feed the simulation with new data. The different callbacks @@ -43,12 +44,6 @@ function create_callbacks( save_flow_cb = SavingCallback(save_flow, saved_flow; saveat, save_start = false) push!(callbacks, save_flow_cb) - # save solver stats - saved_solver_stats = SavedValues(Float64, SolverStats) - solver_stats_cb = - SavingCallback(save_solver_stats, saved_solver_stats; saveat, save_start = true) - push!(callbacks, solver_stats_cb) - # interpolate the levels saved_subgrid_level = SavedValues(Float64, Vector{Float64}) if config.results.subgrid @@ -64,28 +59,12 @@ function create_callbacks( discrete_control_cb = FunctionCallingCallback(apply_discrete_control!) push!(callbacks, discrete_control_cb) - saved = SavedResults( - saved_flow, - saved_vertical_flux, - saved_subgrid_level, - saved_solver_stats, - ) + saved = SavedResults(saved_flow, saved_vertical_flux, saved_subgrid_level) callback = CallbackSet(callbacks...) return callback, saved end -function save_solver_stats(u, t, integrator) - (; stats) = integrator.sol - (; - time = t, - rhs_calls = stats.nf, - linear_solves = stats.nsolve, - accepted_timesteps = stats.naccept, - rejected_timesteps = stats.nreject, - ) -end - function check_negative_storage(u, t, integrator)::Nothing (; basin) = integrator.p (; node_id) = basin diff --git a/core/src/config.jl b/core/src/config.jl index 11e97608d..084bb4040 100644 --- a/core/src/config.jl +++ b/core/src/config.jl @@ -11,13 +11,10 @@ module config using Configurations: Configurations, @option, from_toml, @type_alias using DataStructures: DefaultDict using Dates: DateTime -using LineSearches: BackTracking using Logging: LogLevel, Debug, Info, Warn, Error using ..Ribasim: Ribasim, isnode, nodetype using OrdinaryDiffEq: OrdinaryDiffEqAlgorithm, - OrdinaryDiffEqNewtonAdaptiveAlgorithm, - NLNewton, Euler, ImplicitEuler, KenCarp4, @@ -239,17 +236,11 @@ function algorithm(solver::Solver)::OrdinaryDiffEqAlgorithm error("Given solver algorithm $(solver.algorithm) not supported.\n\ Available options are: ($(options)).") end - kwargs = Dict{Symbol, Any}() - if algotype <: OrdinaryDiffEqNewtonAdaptiveAlgorithm - kwargs[:nlsolve] = NLNewton(; relax = BackTracking()) - end # not all algorithms support this keyword - kwargs[:autodiff] = solver.autodiff try - algotype(; kwargs...) + algotype(; solver.autodiff) catch - pop!(kwargs, :autodiff) - algotype(; kwargs...) + algotype() end end diff --git a/core/src/model.jl b/core/src/model.jl index c3d3b922e..2a12beea8 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -2,7 +2,6 @@ struct SavedResults{V1 <: ComponentVector{Float64}} flow::SavedValues{Float64, SavedFlow} vertical_flux::SavedValues{Float64, V1} subgrid_level::SavedValues{Float64, Vector{Float64}} - solver_stats::SavedValues{Float64, SolverStats} end """ diff --git a/core/src/parameter.jl b/core/src/parameter.jl index d4bfbe8c5..dcecbad96 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -1,11 +1,3 @@ -const SolverStats = @NamedTuple{ - time::Float64, - rhs_calls::Int, - linear_solves::Int, - accepted_timesteps::Int, - rejected_timesteps::Int, -} - # EdgeType.flow and NodeType.FlowBoundary @enumx EdgeType flow control none @eval @enumx NodeType $(config.nodetypes...) diff --git a/core/src/write.jl b/core/src/write.jl index 179897883..5cae20042 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -44,11 +44,6 @@ function write_results(model::Model)::Model path = results_path(config, RESULTS_FILENAME.subgrid_level) write_arrow(path, table, compress; remove_empty_table) - # solver stats - table = solver_stats_table(model) - path = results_path(config, RESULTS_FILENAME.solver_stats) - write_arrow(path, table, compress; remove_empty_table) - @debug "Wrote results." return model end @@ -61,7 +56,6 @@ const RESULTS_FILENAME = ( allocation = "allocation.arrow", allocation_flow = "allocation_flow.arrow", subgrid_level = "subgrid_level.arrow", - solver_stats = "solver_stats.arrow", ) "Get the storage and level of all basins as matrices of nbasin × ntime" @@ -189,28 +183,6 @@ function basin_table( ) end -function solver_stats_table( - model::Model, -)::@NamedTuple{ - time::Vector{DateTime}, - rhs_calls::Vector{Int}, - linear_solves::Vector{Int}, - accepted_timesteps::Vector{Int}, - rejected_timesteps::Vector{Int}, -} - solver_stats = StructVector(model.saved.solver_stats.saveval) - (; - time = datetime_since.( - solver_stats.time[1:(end - 1)], - model.integrator.p.starttime, - ), - rhs_calls = diff(solver_stats.rhs_calls), - linear_solves = diff(solver_stats.linear_solves), - accepted_timesteps = diff(solver_stats.accepted_timesteps), - rejected_timesteps = diff(solver_stats.rejected_timesteps), - ) -end - "Create a flow result table from the saved data" function flow_table( model::Model, diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index fdf31bf77..ca3bac404 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -29,12 +29,10 @@ flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) subgrid_bytes = read(normpath(dirname(toml_path), "results/subgrid_level.arrow")) - solver_stats_bytes = read(normpath(dirname(toml_path), "results/solver_stats.arrow")) flow = Arrow.Table(flow_bytes) basin = Arrow.Table(basin_bytes) subgrid = Arrow.Table(subgrid_bytes) - solver_stats = Arrow.Table(solver_stats_bytes) @testset "Schema" begin @test Tables.schema(flow) == Tables.Schema( @@ -85,10 +83,6 @@ (:time, :subgrid_id, :subgrid_level), (DateTime, Int32, Float64), ) - @test Tables.schema(solver_stats) == Tables.Schema( - (:time, :rhs_calls, :linear_solves, :accepted_timesteps, :rejected_timesteps), - (DateTime, Int, Int, Int, Int), - ) end @testset "Results size" begin @@ -241,7 +235,7 @@ end @test allunique(Ribasim.tsaves(model)) precipitation = Ribasim.get_tmp(model.integrator.p.basin.vertical_flux, 0).precipitation @test length(precipitation) == 4 - @test model.integrator.sol.u[end] ≈ Float32[471.9218, 471.9199, 363.6981, 1427.962] skip = + @test model.integrator.sol.u[end] ≈ Float32[472.02444, 472.02252, 367.6387, 1427.981] skip = Sys.isapple() end @@ -277,13 +271,13 @@ end @test successful_retcode(dense_fdm) @test dense_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 0.1 - @test sparse_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 - @test dense_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 + @test sparse_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] + @test dense_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 0.1 config = Ribasim.Config(toml_path; solver_algorithm = "Rodas5", solver_autodiff = true) time_ad = Ribasim.run(config) @test successful_retcode(time_ad) - @test time_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 + @test time_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 1 end @testitem "TabulatedRatingCurve model" begin diff --git a/docs/guide/examples.ipynb b/docs/guide/examples.ipynb index 448d3a0e0..307dbbe53 100644 --- a/docs/guide/examples.ipynb +++ b/docs/guide/examples.ipynb @@ -398,8 +398,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "## Running a model\n", - "Now run the model. You can open a terminal and run it from there. For example, to run the basic model, input:\n", + "Now run the model. You can open a terminal and run it from there::\n", "\n", "```bash\n", "ribasim basic/ribasim.toml\n", @@ -431,8 +430,7 @@ "df_basin_wide = df_basin.pivot_table(\n", " index=\"time\", columns=\"node_id\", values=[\"storage\", \"level\"]\n", ")\n", - "ax = df_basin_wide[\"level\"].plot()\n", - "ax.set_ylabel(\"level [m]\");" + "df_basin_wide[\"level\"].plot()" ] }, { @@ -445,8 +443,7 @@ "df_flow[\"edge\"] = list(zip(df_flow.from_node_id, df_flow.to_node_id))\n", "df_flow[\"flow_m3d\"] = df_flow.flow_rate * 86400\n", "ax = df_flow.pivot_table(index=\"time\", columns=\"edge\", values=\"flow_m3d\").plot()\n", - "ax.legend(bbox_to_anchor=(1.3, 1), title=\"Edge\")\n", - "ax.set_ylabel(\"flow [m³day⁻¹]\");" + "ax.legend(bbox_to_anchor=(1.3, 1), title=\"Edge\")" ] }, { @@ -713,8 +710,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", - "After running the model, read back the results:" + "Now run the model with `ribasim level_range/ribasim.toml`.\n", + "After running the model, read back the results:\n" ] }, { @@ -994,7 +991,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", + "Now run the model with `ribasim pid_control/ribasim.toml`.\n", "After running the model, read back the results:\n" ] }, @@ -1275,7 +1272,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", + "Now run the model with `ribasim allocation_example/ribasim.toml`.\n", "After running the model, read back the results:\n" ] }, @@ -1562,7 +1559,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", + "Now run the model with `ribasim level_demand/ribasim.toml`.\n", "After running the model, read back the results:\n" ] }, @@ -1958,7 +1955,6 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the result to plot the flow of each polder basin." ] }, @@ -1990,11 +1986,9 @@ "outputs": [], "source": [ "df_input = df_pivot.loc[:, [(1, 2), (13, 1)]]\n", - "ax = df_input.plot(ylim=[-1.0, 20.0])\n", - "ax.set_ylabel(\"flow [m³day⁻¹]\")\n", + "df_input.plot(ylim=[-1.0, 20.0])\n", "df_weirs = df_pivot.loc[:, [(4, 5), (6, 7), (8, 9), (10, 11)]]\n", - "ax = df_weirs.plot(ylim=[-1.0, 15.0])\n", - "ax.set_ylabel(\"flow [m³day⁻¹]\");" + "df_weirs.plot(ylim=[-1.0, 15.0])" ] }, { @@ -2021,9 +2015,7 @@ "df_basin_wide = df_basin.pivot_table(\n", " index=\"time\", columns=\"node_id\", values=[\"storage\", \"level\", \"vertical_flux\"]\n", ")\n", - "df_basin_wide[\"vertical_flux\"] *= 86400\n", - "ax = df_basin_wide[\"vertical_flux\"].plot()\n", - "ax.set_ylabel(\"vertical flux [m³day⁻¹]\");" + "df_basin_wide[\"vertical_flux\"].plot()" ] }, { @@ -2039,8 +2031,7 @@ "metadata": {}, "outputs": [], "source": [ - "ax = df_basin_wide[\"level\"].plot()\n", - "ax.set_ylabel(\"level [m]\");" + "df_basin_wide[\"level\"].plot()" ] }, { @@ -2294,7 +2285,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model (for running instructions see [here](#running-a-model)).\n", + "Now run the model with `ribasim outlet_continuous_control/ribasim.toml`.\n", "After running the model, read back the results:" ] }, @@ -2305,6 +2296,7 @@ "outputs": [], "source": [ "df_flow = pd.read_feather(datadir / \"outlet_continuous_control/results/flow.arrow\")\n", + "\n", "fig, ax = plt.subplots()\n", "\n", "\n", @@ -2319,14 +2311,13 @@ " x=\"time\",\n", " y=\"flow_rate\",\n", " ax=ax,\n", - " label=f\"{from_node_type} #{from_node_id} → {to_node_type} #{to_node_id}\",\n", + " label=f\"{from_node_type} #{from_node_id} -> {to_node_type} #{to_node_id}\",\n", " )\n", "\n", "\n", "plot_edge_flow(\"LinearResistance\", 1, \"Basin\", 1)\n", "plot_edge_flow(\"Basin\", 1, \"Outlet\", 1)\n", - "plot_edge_flow(\"Basin\", 1, \"Outlet\", 2)\n", - "ax.set_ylabel(\"flow [m³s⁻¹]\");" + "plot_edge_flow(\"Basin\", 1, \"Outlet\", 2)" ] } ], diff --git a/docs/reference/usage.qmd b/docs/reference/usage.qmd index 1da163aec..ce18f2a64 100644 --- a/docs/reference/usage.qmd +++ b/docs/reference/usage.qmd @@ -316,15 +316,3 @@ column | type time | DateTime subgrid_id | Int32 subgrid_level | Float64 - -## Solver statistics - `solver_stats.arrow` - -This result file contains statistics about the solver, which can give an insight into how well the solver is performing over time. The data is solved by `saveat` (see [configuration file](#configuration-file)). `water_balance` refers to the right-hand-side function of the system of differential equations solved by the Ribasim core. - -column | type ---------------------| ----- -time | DateTime -water_balance_calls | Int -linear_solves | Int -accepted_timesteps | Int -rejected_timesteps | Int diff --git a/mypy.ini b/mypy.ini index db8f09ecd..f5510b114 100644 --- a/mypy.ini +++ b/mypy.ini @@ -10,7 +10,6 @@ extra_checks = True disallow_subclassing_any = True disallow_untyped_decorators = True disallow_any_generics = True -mypy_path = .pixi/envs/$PIXI_ENVIRONMENT_NAME/Library/python,.pixi/envs/$PIXI_ENVIRONMENT_NAME/share/qgis/python # Ignore errors for imported packages. [mypy-console.*] diff --git a/open-vscode.bat b/open-vscode.bat deleted file mode 100644 index ae86837bf..000000000 --- a/open-vscode.bat +++ /dev/null @@ -1 +0,0 @@ -pixi run --environment=dev code . | exit diff --git a/pixi.lock b/pixi.lock index da1d2f6a9..0ef65c23f 100644 --- a/pixi.lock +++ b/pixi.lock @@ -13,34 +13,34 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.22-hbd3ac97_10.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.7.1-h87b94db_1.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.22-heee8711_7.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.7.0-h816f305_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.23-h4ab18f5_0.conda - 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cffi >=1.11 - python >=3.12,<3.13.0a0 @@ -42153,8 +39398,8 @@ packages: license_family: BSD purls: - pkg:pypi/zstandard?source=conda-forge-mapping - size: 320649 - timestamp: 1721044547910 + size: 324422 + timestamp: 1718867030240 - kind: conda name: zstd version: 1.5.6 diff --git a/python/ribasim/README.md b/python/ribasim/README.md index f424089ac..feac02bb8 100644 --- a/python/ribasim/README.md +++ b/python/ribasim/README.md @@ -13,8 +13,8 @@ setup is fully reproducible. The package is [registered in PyPI](https://pypi.org/project/ribasim/) and can therefore be installed with `pip install ribasim`. -For documentation please see the https://deltares.github.io/Ribasim/ and [API reference](https://deltares.github.io/Ribasim/reference/python/) +For documentation please see the [examples](https://deltares.github.io/Ribasim/python/examples.html) and [API reference](https://deltares.github.io/Ribasim/python/reference/). # Contributing -For the developer docs please have a look at https://deltares.github.io/Ribasim/dev/. +For the developer docs please have a look at https://deltares.github.io/Ribasim/python/developer.html diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index ce1f09a91..0b7162ab6 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -107,7 +107,7 @@ def add( ) self.df.index.name = "fid" - def _get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: + def get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: assert self.df is not None return (self.df.edge_type == edge_type).to_numpy() @@ -118,14 +118,6 @@ def sort(self): self.df.sort_index(inplace=True) def plot(self, **kwargs) -> Axes: - """Plot the edges of the model. - - Parameters - ---------- - **kwargs : Dict - Supported: 'ax', 'color_flow', 'color_control' - """ - assert self.df is not None kwargs = kwargs.copy() # Avoid side-effects ax = kwargs.get("ax", None) @@ -149,8 +141,8 @@ def plot(self, **kwargs) -> Axes: kwargs_control["color"] = color_control kwargs_control["label"] = "Control edge" - where_flow = self._get_where_edge_type("flow") - where_control = self._get_where_edge_type("control") + where_flow = self.get_where_edge_type("flow") + where_control = self.get_where_edge_type("control") if not self.df[where_flow].empty: self.df[where_flow].plot(**kwargs_flow) diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index bae678a09..b5c8ee89d 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -92,7 +92,7 @@ class BaseModel(PydanticBaseModel): ) @classmethod - def _fields(cls) -> list[str]: + def fields(cls) -> list[str]: """Return the names of the fields contained in the Model.""" return list(cls.model_fields.keys()) @@ -117,7 +117,7 @@ class FileModel(BaseModel, ABC): @model_validator(mode="before") @classmethod - def _check_filepath(cls, value: Any) -> Any: + def check_filepath(cls, value: Any) -> Any: # Enable initialization with a Path. if isinstance(value, dict): # Pydantic Model init requires a dict @@ -173,7 +173,7 @@ class TableModel(FileModel, Generic[TableT]): @field_validator("df") @classmethod - def _check_extra_columns(cls, v: DataFrame[TableT]): + def check_extra_columns(cls, v: DataFrame[TableT]): """Allow only extra columns with `meta_` prefix.""" if isinstance(v, (pd.DataFrame, gpd.GeoDataFrame)): for colname in v.columns: @@ -187,7 +187,7 @@ def _check_extra_columns(cls, v: DataFrame[TableT]): return v @model_serializer - def _set_model(self) -> str | None: + def set_model(self) -> str | None: return str(self.filepath.name) if self.filepath is not None else None @classmethod @@ -213,14 +213,14 @@ def tablename(cls) -> str: @model_validator(mode="before") @classmethod - def _check_dataframe(cls, value: Any) -> Any: + def check_dataframe(cls, value: Any) -> Any: # Enable initialization with a DataFrame. if isinstance(value, pd.DataFrame | gpd.GeoDataFrame): value = {"df": value} return value - def _node_ids(self) -> set[int]: + def node_ids(self) -> set[int]: node_ids: set[int] = set() if self.df is not None and "node_id" in self.df.columns: node_ids.update(self.df["node_id"]) @@ -394,7 +394,7 @@ class ChildModel(BaseModel): _parent_field: str | None = None @model_validator(mode="after") - def _check_parent(self) -> "ChildModel": + def check_parent(self) -> "ChildModel": if self._parent is not None: self._parent.model_fields_set.update({self._parent_field}) return self @@ -432,7 +432,7 @@ def _layername(cls, field: str) -> str: return f"{cls.get_input_type()}{delimiter}{field}" def _tables(self) -> Generator[TableModel[Any], Any, None]: - for key in self._fields(): + for key in self.fields(): attr = getattr(self, key) if ( isinstance(attr, TableModel) @@ -441,10 +441,10 @@ def _tables(self) -> Generator[TableModel[Any], Any, None]: ): yield attr - def _node_ids(self) -> set[int]: + def node_ids(self) -> set[int]: node_ids: set[int] = set() for table in self._tables(): - node_ids.update(table._node_ids()) + node_ids.update(table.node_ids()) return node_ids def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): @@ -457,7 +457,7 @@ def _repr_content(self) -> str: Skip "empty" attributes: when the dataframe of a TableModel is None. """ content = [] - for field in self._fields(): + for field in self.fields(): attr = getattr(self, field) if isinstance(attr, TableModel): if attr.df is not None: diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 4cca8dbbc..3aac4c4be 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -98,7 +98,7 @@ class Model(FileModel): edge: EdgeTable = Field(default_factory=EdgeTable) @model_validator(mode="after") - def _set_node_parent(self) -> "Model": + def set_node_parent(self) -> "Model": for ( k, v, @@ -108,14 +108,14 @@ def _set_node_parent(self) -> "Model": return self @model_validator(mode="after") - def _ensure_edge_table_is_present(self) -> "Model": + def ensure_edge_table_is_present(self) -> "Model": if self.edge.df is None: self.edge.df = GeoDataFrame[EdgeSchema]() self.edge.df.set_geometry("geometry", inplace=True, crs=self.crs) return self @field_serializer("input_dir", "results_dir") - def _serialize_path(self, path: Path) -> str: + def serialize_path(self, path: Path) -> str: return str(path) def model_post_init(self, __context: Any) -> None: @@ -132,7 +132,7 @@ def __repr__(self) -> str: """ content = ["ribasim.Model("] INDENT = " " - for field in self._fields(): + for field in self.fields(): attr = getattr(self, field) if isinstance(attr, EdgeTable): content.append(f"{INDENT}{field}=Edge(...),") @@ -289,7 +289,7 @@ def _load(cls, filepath: Path | None) -> dict[str, Any]: return {} @model_validator(mode="after") - def _reset_contextvar(self) -> "Model": + def reset_contextvar(self) -> "Model": # Drop database info context_file_loading.set({}) return self diff --git a/python/ribasim_api/README.md b/python/ribasim_api/README.md index f18cc6f81..8dd3c97a7 100644 --- a/python/ribasim_api/README.md +++ b/python/ribasim_api/README.md @@ -20,4 +20,4 @@ conda install -c conda-forge ribasim-api # Contributing -For the developer docs please have a look at https://deltares.github.io/Ribasim/dev/. +For the developer docs please have a look at https://deltares.github.io/Ribasim/contribute/python.html diff --git a/python/ribasim_api/tests/test_bmi.py b/python/ribasim_api/tests/test_bmi.py index 23aa3e772..dbb4e5f5b 100644 --- a/python/ribasim_api/tests/test_bmi.py +++ b/python/ribasim_api/tests/test_bmi.py @@ -119,9 +119,8 @@ def test_get_value_ptr_subgrid(libribasim, two_basin, tmp_path): libribasim.update_until(86400.0) # Subgrid level - libribasim.update_subgrid_level() actual_subgrid_level = libribasim.get_value_ptr("basin.subgrid_level") - expected_subgrid_level = np.array([2.17, 0.006142]) + expected_subgrid_level = np.array([np.nan, np.nan]) assert_array_almost_equal(actual_subgrid_level, expected_subgrid_level) diff --git a/ribasim_qgis/ribasim_qgis.py b/ribasim_qgis/ribasim_qgis.py index 3957a2f06..c2a8462ca 100644 --- a/ribasim_qgis/ribasim_qgis.py +++ b/ribasim_qgis/ribasim_qgis.py @@ -8,7 +8,7 @@ from qgis.PyQt.QtWidgets import QAction -class RibasimDockWidget(QgsDockWidget): +class RibasimDockWidget(QgsDockWidget): # type: ignore def closeEvent(self, event) -> None: # TODO: if we implement talking to a Julia server, shut it down here. event.accept() diff --git a/ribasim_qgis/scripts/qgis_testrunner.py b/ribasim_qgis/scripts/qgis_testrunner.py index 726341abc..d8f71bb22 100644 --- a/ribasim_qgis/scripts/qgis_testrunner.py +++ b/ribasim_qgis/scripts/qgis_testrunner.py @@ -87,7 +87,7 @@ def __get_test_function(test_module_name): from qgis.PyQt.QtCore import QDir -class QgsProjectBadLayerDefaultHandler(QgsProjectBadLayerHandler): +class QgsProjectBadLayerDefaultHandler(QgsProjectBadLayerHandler): # type: ignore def handleBadLayers(self, layers, dom): pass diff --git a/ribasim_qgis/tests/core/test_model.py b/ribasim_qgis/tests/core/test_model.py index f0e43eb5a..9f780385f 100644 --- a/ribasim_qgis/tests/core/test_model.py +++ b/ribasim_qgis/tests/core/test_model.py @@ -8,7 +8,7 @@ ) -class TestModel(unittest.TestCase): +class TestModel(unittest.TestCase): # type: ignore tests_folder_path = Path(__file__).parent.parent.resolve() data_folder_path = tests_folder_path / "data" diff --git a/ribasim_qgis/ui_tests/test_load_plugin.py b/ribasim_qgis/ui_tests/test_load_plugin.py index 6cef3bb33..b37f9c2a4 100644 --- a/ribasim_qgis/ui_tests/test_load_plugin.py +++ b/ribasim_qgis/ui_tests/test_load_plugin.py @@ -2,7 +2,7 @@ from qgis.utils import iface, plugins -class TestPlugin(unittest.TestCase): +class TestPlugin(unittest.TestCase): # type: ignore def test_plugin_is_loaded(self): """Test plugin is properly loaded and appears in QGIS plugins.""" plugin = plugins.get("ribasim_qgis") From f76ae6df0fd97218c204a9962bee09d80de22f4e Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 11:18:44 +0200 Subject: [PATCH 45/60] ignore .iidea --- .idea/.gitignore | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 .idea/.gitignore diff --git a/.idea/.gitignore b/.idea/.gitignore new file mode 100644 index 000000000..26d33521a --- /dev/null +++ b/.idea/.gitignore @@ -0,0 +1,3 @@ +# Default ignored files +/shelf/ +/workspace.xml From 624124d70060dcc7646458515054de1f16f4a3d7 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 11:20:00 +0200 Subject: [PATCH 46/60] ignore .idea --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index c43f491f5..50768a135 100644 --- a/.gitignore +++ b/.gitignore @@ -154,6 +154,7 @@ playground/output # Ruff .ruff_cache .teamcity/.idea/ +.idea/ # https://github.com/Deltares/Ribasim/issues/1652 ribasim_qgis/tests/data/database.gpkg From 236ecf99a9ec8954cbafc6d127473d13919f54c9 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 15:59:13 +0200 Subject: [PATCH 47/60] created python script to retrieve MiniO file --- .../Ribasim_Windows/RibasimWindowsProject.kt | 2 +- .teamcity/Templates/IntegrationTest.kt | 4 +- pixi.lock | 516 ++++++++++++++++++ pixi.toml | 1 + utils/get_benchmark.py | 25 + 5 files changed, 546 insertions(+), 2 deletions(-) create mode 100644 utils/get_benchmark.py diff --git a/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt b/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt index 74b70a768..a7759d121 100644 --- a/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt +++ b/.teamcity/Ribasim_Windows/RibasimWindowsProject.kt @@ -97,7 +97,7 @@ object Windows_TestDelwaqCoupling : BuildType({ dependencies { artifacts(AbsoluteId("Dimr_DimrCollectors_2bDimrCollectorReleaseSigned")) { id = "ARTIFACT_DEPENDENCY_4206" - buildRule = lastPinned() + buildRule = tag("DIMRset_2.27.09") artifactRules = "dimrset_x64_signed_*.zip!/x64 => dimr" } } diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 7cbad0330..7418adf20 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -36,7 +36,9 @@ open class IntegrationTest (platformOs: String) : Template() { root(Ribasim.vcsRoots.Ribasim, ". => ribasim") cleanCheckout = true } - + params { + password("MiniO_credential_token", "credentialsJSON:86cbf3e5-724c-437d-9962-7a3f429b0aa2") + } val header = generateIntegrationTestHeader(platformOs) steps { diff --git a/pixi.lock b/pixi.lock index 0ef65c23f..db117529a 100644 --- a/pixi.lock +++ b/pixi.lock @@ -11,6 +11,8 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.12-h4ab18f5_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/argon2-cffi-23.1.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/argon2-cffi-bindings-21.2.0-py312h98912ed_4.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.22-heee8711_7.conda @@ -93,6 +95,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-2.80.3-h8a4344b_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.80.3-h73ef956_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/glog-0.7.1-hbabe93e_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h59595ed_1003.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/gst-plugins-base-1.24.5-hbaaba92_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/gstreamer-1.24.5-haf2f30d_0.conda @@ -213,6 +216,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.8.4-py312h7900ff3_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.8.4-py312h20ab3a6_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.1.7-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/minio-7.2.7-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/minizip-4.0.7-h401b404_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/mpg123-1.32.6-h59595ed_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/msgpack-python-1.0.8-py312h2492b07_0.conda @@ -265,6 +269,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/pyarrow-core-16.1.0-py312h70856f0_4_cpu.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pyarrow-hotfix-0.6-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pycparser-2.22-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/pycryptodome-3.20.0-py312h8666cd8_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.8.2-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.20.1-py312hf008fa9_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.18.0-pyhd8ed1ab_0.conda @@ -360,6 +365,8 @@ environments: osx-64: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/appnope-0.1.4-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/argon2-cffi-23.1.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-64/argon2-cffi-bindings-21.2.0-py312h104f124_4.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-auth-0.7.20-h26f788b_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/aws-c-cal-0.6.12-h7d0aca8_0.conda @@ -435,6 +442,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-64/gflags-2.2.2-hb1e8313_1004.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/osx-64/giflib-5.2.2-h10d778d_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/glog-0.7.1-h2790a97_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-64/gmp-6.3.0-hf036a51_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.1.0-pyhd8ed1ab_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/hatchling-1.25.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/hdf4-4.2.15-h8138101_7.conda @@ -526,6 +534,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-64/matplotlib-3.8.4-py312hb401068_2.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/matplotlib-base-3.8.4-py312hb6d62fa_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.1.7-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/minio-7.2.7-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/minizip-4.0.7-h62b0c8d_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/msgpack-python-1.0.8-py312hc3c9ca0_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/multimethod-1.9.1-pyhd8ed1ab_0.conda @@ -573,6 +582,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-64/pyarrow-core-16.0.0-py312he4e9a06_0_cpu.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pyarrow-hotfix-0.6-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pycparser-2.22-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-64/pycryptodome-3.20.0-py312h3c45a10_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.8.2-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-64/pydantic-core-2.20.1-py312ha47ea1c_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.18.0-pyhd8ed1ab_0.conda @@ -647,6 +657,8 @@ environments: osx-arm64: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/appnope-0.1.4-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/argon2-cffi-23.1.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-arm64/argon2-cffi-bindings-21.2.0-py312h02f2b3b_4.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/aws-c-auth-0.7.22-haa5a189_7.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/aws-c-cal-0.7.0-h94d0942_0.conda @@ -723,6 +735,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/gflags-2.2.2-hc88da5d_1004.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/osx-arm64/giflib-5.2.2-h93a5062_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/glog-0.7.1-heb240a5_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-arm64/gmp-6.3.0-h7bae524_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.1.0-pyhd8ed1ab_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/hatchling-1.25.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/hdf4-4.2.15-h2ee6834_7.conda @@ -814,6 +827,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-3.8.4-py312h1f38498_2.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/matplotlib-base-3.8.4-py312h4479663_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.1.7-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/minio-7.2.7-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/minizip-4.0.7-h27ee973_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/msgpack-python-1.0.8-py312h157fec4_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/multimethod-1.9.1-pyhd8ed1ab_0.conda @@ -861,6 +875,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/pyarrow-core-16.1.0-py312h21f1c3e_4_cpu.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pyarrow-hotfix-0.6-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pycparser-2.22-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/osx-arm64/pycryptodome-3.20.0-py312h332fddf_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.8.2-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/osx-arm64/pydantic-core-2.20.1-py312h552d48e_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.18.0-pyhd8ed1ab_0.conda @@ -934,6 +949,8 @@ environments: - pypi: python/ribasim_testmodels win-64: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/argon2-cffi-23.1.0-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/win-64/argon2-cffi-bindings-21.2.0-py312he70551f_4.conda - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - 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toml_path = normpath(@__DIR__, "../../../hws_2024_7_0/hws.toml") + toml_path = normpath(@__DIR__, "../../models/hws_2024_7_0/hws.toml") @test ispath(toml_path) model = Ribasim.run(toml_path) @test model isa Ribasim.Model @test successful_retcode(model) - basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/hws/basin_state.arrow")) + basin_bytes_bench = + read(normpath(@__DIR__, "../../models/hws_2024_7_0/benchmark/basin_state.arrow")) basin_bench = Arrow.Table(basin_bytes_bench) basin_bytes = read(normpath(dirname(toml_path), "results/basin_state.arrow")) diff --git a/utils/get_benchmark.py b/utils/get_benchmark.py index 1c4a63432..f8a0d4421 100644 --- a/utils/get_benchmark.py +++ b/utils/get_benchmark.py @@ -20,6 +20,6 @@ for obj in objects: try: - myClient.fget_object(myBucketName, obj.object_name, "" + obj.object_name) + myClient.fget_object(myBucketName, obj.object_name, "models/" + obj.object_name) except S3Error as e: print(f"Error occurred: {e}") From bcef9ad3cdbedd980a9498ff2d6e9f0d6d69be05 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 17:22:09 +0200 Subject: [PATCH 50/60] address 2nd round of comment --- core/regression_test/regression_test.jl | 12 ------------ docs/dev/benchmark.qmd | 17 ++++++++++------- 2 files changed, 10 insertions(+), 19 deletions(-) diff --git a/core/regression_test/regression_test.jl b/core/regression_test/regression_test.jl index 81121def3..4708cdd41 100644 --- a/core/regression_test/regression_test.jl +++ b/core/regression_test/regression_test.jl @@ -170,7 +170,6 @@ end @test all(q -> abs(q) < 100.0, basin.storage - basin_bench.storage) @test all(q -> abs(q) < 0.5, basin.level - basin_bench.level) @test all(q -> abs(q) < 1e-3, basin.balance_error) - @test all(q -> abs(q) < 2.5, basin.relative_error) end end end @@ -235,17 +234,6 @@ end # Testbench for basin.arrow @test basin.time == basin_bench.time @test basin.node_id == basin_bench.node_id - # TODO @test all(q -> abs(q) < 12.0, basin.storage - basin_bench.storage) - # TODO @test all( - # q -> abs(q) < 100.0, - # basin.storage[(end - 16):end] - basin_bench.storage[(end - 16):end], - # ) - # TODO @test all( - # q -> abs(q) < 2.0, - # basin.level[(end - 16):end] - basin_bench.level[(end - 16):end], - # ) - # TODO @test all(q -> abs(q) < 1e-1, basin.balance_error) - # TODO @test all(q -> abs(q) < 30.0, basin.relative_error) end end end diff --git a/docs/dev/benchmark.qmd b/docs/dev/benchmark.qmd index 63ca66911..35ff9bcb9 100644 --- a/docs/dev/benchmark.qmd +++ b/docs/dev/benchmark.qmd @@ -2,7 +2,8 @@ title: "Benchmark" --- -This document describes how the benchmarking and performance testing of Ribasim is handled. In Ribasim, the benchmarking includes and regression tests on the test models and regressive performance tests on the production models. +This document describes how the benchmarking and performance testing of Ribasim is handled. +In Ribasim, the benchmarking includes and regression tests on the test models and regressive performance tests on the production models. The idea of regression tests on the test models is to run models with various solvers, run models with a sparse Jacobian and a dense one and compare the outputs. It will possibly involve production models in the future. @@ -15,9 +16,11 @@ It will report if the new changes in the code decrease the model's performance o ## Benchmark the ODE solvers The benchmarking of the ODE solvers is done by running the test models with different ODE solvers and solver settings and comparing the output with the benchmark. -The settings include the true and false of jacobian density and auto differentiation. Currently, 4 models are chosen to undergo the regression tests. They are `trivial`, `basic`, `pid_control` and `subnetwork_with_sources`. +The settings include toggling the `sparse` and `autodiff` solver settings. +Currently, 4 models are chosen to undergo the regression tests. +They are `trivial`, `basic`, `pid_control` and `subnetwork_with_sources`. -The current benchmark is the output files of a stable run of the test models with the default (`QNDF`) solver with default settings. +The benchmark reference are the output files of a run of the test models with default solver settings. The output files `basin.arrow` and `flow.arrow` are used for comparison. Different margins are set for the comparison of the outputs, and the benchmark is considered passed if the output is within the margin. Since we are still in the process of evaluating the performance of different solvers, the margin is subject to change. @@ -31,9 +34,9 @@ TODO, and can be merged with the section [benchmark of the ODE solvers](#benchma TODO, [#issue 1658](https://github.com/Deltares/Ribasim/issues/1658), and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. # Benchmarking of the production model -Regressive performance tests on the production models are done by running the production models with the new changes of the code and comparing the runtime performance with the benchmark. -The current benchmark is the output files of a stable run of the production models with the default (`QNDF`) solver. -The output file "basin_state.arrow" which records the end states of the basin is used for comparison. +Regressive performance tests on the production models are done by running the production models with the new changes of the code and comparing the runtime performance with the reference run. +The references are the output files of a run of the production models with the default solver settings. +The output file `basin_state.arrow` which records the end states of the basin is used for comparison. Since the development of the model is still ongoing, the benchmark is subject to change. -The regressive performance tests are currently run on a weekly basis. When the development of the model is more stable, the tests will be run more frequently. +The regressive performance tests are currently run on a weekly basis. From 3ac542dd12edacc6b86cbaedab4d54157e87c778 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 17:28:35 +0200 Subject: [PATCH 51/60] leave time for TC agent to run --- .teamcity/Templates/IntegrationTest.kt | 2 +- core/integration_test/hws_integration_test.jl | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 59505b964..a31280e78 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -65,7 +65,7 @@ open class IntegrationTest (platformOs: String) : Template() { } failureConditions { - executionTimeoutMin = 30 + executionTimeoutMin = 90 } } diff --git a/core/integration_test/hws_integration_test.jl b/core/integration_test/hws_integration_test.jl index 290254d10..4ef589419 100644 --- a/core/integration_test/hws_integration_test.jl +++ b/core/integration_test/hws_integration_test.jl @@ -22,9 +22,8 @@ timed = @timed Ribasim.run(toml_path) - # current benchmark is 464s + # current benchmark is 600s benchmark_runtime = 600 - @test timed.time <= 1200 performance_diff = round((timed.time - benchmark_runtime) / benchmark_runtime * 100; digits = 2) if performance_diff < 0.0 From 85752a13f0b2f069573cd5a512e4827659ab5a4b Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 18:08:18 +0200 Subject: [PATCH 52/60] rename --- .teamcity/Templates/IntegrationTest.kt | 2 +- utils/{get_benchmark.py => get_hws.py} | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename utils/{get_benchmark.py => get_hws.py} (100%) diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index a31280e78..5d22c2d57 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -58,7 +58,7 @@ open class IntegrationTest (platformOs: String) : Template() { workingDir = "ribasim" scriptContent = header + """ - pixi run python utils/get_benchmark.py %MiniO_credential_token% + pixi run python utils/get_hws.py %MiniO_credential_token% pixi run model-integration-test """.trimIndent() } diff --git a/utils/get_benchmark.py b/utils/get_hws.py similarity index 100% rename from utils/get_benchmark.py rename to utils/get_hws.py From db3a0452749bc1caed72d972eb7a2f866c2562f0 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Fri, 9 Aug 2024 18:14:53 +0200 Subject: [PATCH 53/60] remove benchmark from repo since it's obtained from MiniO --- .gitignore | 1 + .teamcity/Templates/RegressionTest.kt | 1 + benchmark/basic/basin.arrow | Bin 85058 -> 0 bytes benchmark/basic/flow.arrow | Bin 52082 -> 0 bytes benchmark/hws/basin_state.arrow | Bin 2250 -> 0 bytes benchmark/pid_control/basin.arrow | Bin 19346 -> 0 bytes benchmark/pid_control/flow.arrow | Bin 14482 -> 0 bytes .../subnetworks_with_sources/basin.arrow | Bin 41714 -> 0 bytes benchmark/subnetworks_with_sources/flow.arrow | Bin 31874 -> 0 bytes utils/get_benchmark.py | 25 ++++++++++++++++++ 10 files changed, 27 insertions(+) delete mode 100644 benchmark/basic/basin.arrow delete mode 100644 benchmark/basic/flow.arrow delete mode 100644 benchmark/hws/basin_state.arrow delete mode 100644 benchmark/pid_control/basin.arrow delete mode 100644 benchmark/pid_control/flow.arrow delete mode 100644 benchmark/subnetworks_with_sources/basin.arrow delete mode 100644 benchmark/subnetworks_with_sources/flow.arrow create mode 100644 utils/get_benchmark.py diff --git a/.gitignore b/.gitignore index 50768a135..6c4d32f7e 100644 --- a/.gitignore +++ b/.gitignore @@ -150,6 +150,7 @@ report.xml # Designated working dir for working on Ribasim models models/ playground/output +benchmark/ # Ruff .ruff_cache diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index 2fb278f44..74a56ad88 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -56,6 +56,7 @@ open class RegressionTest (platformOs: String) : Template() { workingDir = "ribasim" scriptContent = header + """ + pixi run python utils/get_benchmark.py %MiniO_credential_token% pixi run test-ribasim-regression """.trimIndent() } diff --git a/benchmark/basic/basin.arrow b/benchmark/basic/basin.arrow deleted file mode 100644 index 4f9591384a0f420cfb0ea928f550a9d7a8085978..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 85058 zcmdSB1AAoK);3(RZQH7t9ox2T+qP}1lXTRvZ9D07Y_o$-y5ICZd!Oe$&-b1m@Xfl$ znseOa9&5}ov8t|Bt4c^&SwVvt0Qmh;B*6dxWWb*S3qS5H+Et&zRSzg+;xzy9BGe*Nw9 zCwD7*b1Pd{=Z{z)34IjN|Kh{)f&b~-pK&pDHnOrevM~F@cl|GX*D`4#;^aE zkAs`5xvhi8zkLM%ix1-m{wMc8xqOV*zg-;v3t#_lKEwy#*38|^_M^`IFWl(AxlsR; z17PfLF7^lZCocY9^`ABQXPrX*H3uIM2=T|^kDtARshNS5>Bl-k|7$HF{>1?QtNmvT z{&gPMzv~YG0Qtdy{CNE-fA+`6JX+cPHEtiFfA4&(<$vv+Kl=k4fce*X!T;JTk-{H~ z`tS0G1NPw!4@O6IssB)+Kl>D}uZ)Ht;BE6F!5BH8)kO=q8|Cw!FG>svi8l*$}6*OP~+i zeAqR1VyP)rJ9_^h213oyjOlIo`4F^Sk z*P2o<=t+Om+mJr2D182SPt%m8=uBWkUhHb|$$Nz;`IkcJ#y7`S&5W+5?tbKh5nI@) 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z7&xbF4sm2tnshI^Hq=Onb3+=^$F0Jq(PAgbrA8{LFKExJDoKfKFjvK9GFvxTh>dV! zDP!9wtXs1@&S?{3NCNheUVtS*#rVHQFk~qR?tNjZ)>Tx7e zZfjml){Z_0K9P*cF@=JGL>pPB!s+Dtwbq3wl%u?rz5i~j@DsLb7%&;PpfRu1A*ppq zyo-;v+_}%_FE4FkK>)g*n=X`ZvE@nud#L)A#`Rm*?iB17+=b!9B*r1VBjRa)IYh-5 zyXCaO3DzEJv*(3OPRdGy55hPBQ}D!AD|v1udZKrY*MNgy%6iWY|2w3IeR8p#1!l@2 zTvCh5hcm}x)0AaE{tfo?0Q&O@9H1+Ow==C<$=Ad&afD%40?_;T^#$460H%w_&aQ;C zoMB-@f`YoM?4#V$Ladk7yy0~8*E`S-tC%WQ+5-v82B1M#ji|y%V5Ct?UGdJ{LgsH$ zvZ_Du5DTSvW3~y(3;6NYb{#<4AW$c8;yRpJiXv`}sju8v!`ZBPHVyk@?N_jaY)&)Y z00{L9;p=);v*m#$5^Kg}J{iMSozn@sZ}8DNJpV9{yir7AHhv!-+4+cV^>35JFBsUAx+yD>{4Q#ohL9*e=nz)0LNTgxqY+-(>k22Z@ zj%9!Xsz!qyV>Nan1(2oQYqPt@IHd9VWOyp9%=*L5SL_FbofGAzpRK;yr6ZS&LL~@i8)vc9xuvP_VE42wUhpF)#w_C z*6wnsOj|(LH(aZe@ZYo!bg`X)KfHsF>%-!^eqCoY?}rsv?lZh&oHSATbL%CeC7uxK zk?eax9tc|;^Ho$USlIJ@tMc$F-&rU|M&?1=jr?3&4alA^C$k#au Date: Fri, 9 Aug 2024 18:19:06 +0200 Subject: [PATCH 54/60] add password --- .teamcity/Templates/RegressionTest.kt | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index 74a56ad88..3fc8c8804 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -36,7 +36,9 @@ open class RegressionTest (platformOs: String) : Template() { root(Ribasim.vcsRoots.Ribasim, ". => ribasim") cleanCheckout = true } - + params { + password("MiniO_credential_token", "credentialsJSON:86cbf3e5-724c-437d-9962-7a3f429b0aa2") + } val header = generateRegressionTestHeader(platformOs) steps { From 35730b96f3cf85daf1775098e8d031618bc28dab Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 12 Aug 2024 09:46:10 +0200 Subject: [PATCH 55/60] give 1 hour runtime limit for TC --- core/integration_test/hws_integration_test.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/core/integration_test/hws_integration_test.jl b/core/integration_test/hws_integration_test.jl index 4ef589419..738d49b4d 100644 --- a/core/integration_test/hws_integration_test.jl +++ b/core/integration_test/hws_integration_test.jl @@ -1,4 +1,4 @@ -@testitem "HWS model integration test" begin +@testitem "HWS model integration test" timeout = 3600 begin using SciMLBase: successful_retcode using Arrow From a640cbb4c5ce6a4c88fece7b0ab240f027129901 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 12 Aug 2024 10:11:04 +0200 Subject: [PATCH 56/60] merge two interface into one --- .teamcity/Templates/IntegrationTest.kt | 2 +- .teamcity/Templates/RegressionTest.kt | 2 +- .teamcity/Templates/TestDelwaqCoupling.kt | 2 +- utils/get_benchmark.py | 28 +++++++++++++++-------- utils/get_hws.py | 25 -------------------- 5 files changed, 21 insertions(+), 38 deletions(-) delete mode 100644 utils/get_hws.py diff --git a/.teamcity/Templates/IntegrationTest.kt b/.teamcity/Templates/IntegrationTest.kt index 5d22c2d57..f7a3c3ad8 100644 --- a/.teamcity/Templates/IntegrationTest.kt +++ b/.teamcity/Templates/IntegrationTest.kt @@ -58,7 +58,7 @@ open class IntegrationTest (platformOs: String) : Template() { workingDir = "ribasim" scriptContent = header + """ - pixi run python utils/get_hws.py %MiniO_credential_token% + pixi run python utils/get_benchmark.py %MiniO_credential_token% "hws_2024_7_0/" pixi run model-integration-test """.trimIndent() } diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index 3fc8c8804..cfe794b20 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -58,7 +58,7 @@ open class RegressionTest (platformOs: String) : Template() { workingDir = "ribasim" scriptContent = header + """ - pixi run python utils/get_benchmark.py %MiniO_credential_token% + pixi run python utils/get_benchmark.py %MiniO_credential_token% "benchmark/" pixi run test-ribasim-regression """.trimIndent() } diff --git a/.teamcity/Templates/TestDelwaqCoupling.kt b/.teamcity/Templates/TestDelwaqCoupling.kt index 7ea29931f..e4c98dfe9 100644 --- a/.teamcity/Templates/TestDelwaqCoupling.kt +++ b/.teamcity/Templates/TestDelwaqCoupling.kt @@ -20,7 +20,7 @@ open class TestDelwaqCoupling(platformOs: String) : Template() { workingDir = "ribasim" scriptContent = """ pixi --version - pixi run install + pixi run install-ci """.trimIndent() } script { diff --git a/utils/get_benchmark.py b/utils/get_benchmark.py index 967aceb51..4dfc77137 100644 --- a/utils/get_benchmark.py +++ b/utils/get_benchmark.py @@ -3,23 +3,31 @@ from minio import Minio from minio.error import S3Error -# For access -myMinioServer = "s3.deltares.nl" -myAccessKey = "KwKRzscudy3GvRB8BN1Z" -mySecretKey = sys.argv[1] +"""For access +To access and download a specific folder in MinIO server + +minioServer: the access point to MinIO for Deltares +accessKey: the credentials username +secreyKey: input from the terminal, the credentials password +pathToFolder: input from the terminal, the path to the folder to download. E.g. "benchmark/", "hws_2024_7_0/" +""" + +minioServer = "s3.deltares.nl" +accessKey = "KwKRzscudy3GvRB8BN1Z" +secretKey = sys.argv[1] +pathToFolder = sys.argv[2] # The path that will be recursively downloaded -myBucketName = "ribasim" -myPathName = "hws_2024_7_0" -myRewind = "2023.05.10T16:00" # Notation that mc uses +bucketName = "ribasim" +pathName = "hws_2024_7_0" # Minio client connection -myClient = Minio(myMinioServer, access_key=myAccessKey, secret_key=mySecretKey) +myClient = Minio(minioServer, access_key=accessKey, secret_key=secretKey) -objects = myClient.list_objects(myBucketName, prefix="benchmark/", recursive=True) +objects = myClient.list_objects(bucketName, prefix=pathToFolder, recursive=True) for obj in objects: try: - myClient.fget_object(myBucketName, obj.object_name, "" + obj.object_name) + myClient.fget_object(bucketName, obj.object_name, "" + obj.object_name) except S3Error as e: print(f"Error occurred: {e}") diff --git a/utils/get_hws.py b/utils/get_hws.py deleted file mode 100644 index f8a0d4421..000000000 --- a/utils/get_hws.py +++ /dev/null @@ -1,25 +0,0 @@ -import sys - -from minio import Minio -from minio.error import S3Error - -# For access -myMinioServer = "s3.deltares.nl" -myAccessKey = "KwKRzscudy3GvRB8BN1Z" -mySecretKey = sys.argv[1] - -# The path that will be recursively downloaded -myBucketName = "ribasim" -myPathName = "hws_2024_7_0" -myRewind = "2023.05.10T16:00" # Notation that mc uses - -# Minio client connection -myClient = Minio(myMinioServer, access_key=myAccessKey, secret_key=mySecretKey) - -objects = myClient.list_objects(myBucketName, prefix="hws_2024_7_0/", recursive=True) - -for obj in objects: - try: - myClient.fget_object(myBucketName, obj.object_name, "models/" + obj.object_name) - except S3Error as e: - print(f"Error occurred: {e}") From 45ad3131e7485bcac8794e48b6fa008aebf3e331 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 12 Aug 2024 10:21:38 +0200 Subject: [PATCH 57/60] delete place holder TODOs, and move those to relevant issues --- docs/dev/benchmark.qmd | 6 ------ 1 file changed, 6 deletions(-) diff --git a/docs/dev/benchmark.qmd b/docs/dev/benchmark.qmd index 35ff9bcb9..7b66aa4fd 100644 --- a/docs/dev/benchmark.qmd +++ b/docs/dev/benchmark.qmd @@ -27,12 +27,6 @@ Since we are still in the process of evaluating the performance of different sol The regression tests are run on a weekly basis. -## Benchmark the rest of the test models -TODO, and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. - -## Benchmark of the rest of the ODE solvers -TODO, [#issue 1658](https://github.com/Deltares/Ribasim/issues/1658), and can be merged with the section [benchmark of the ODE solvers](#benchmark-the-ode-solvers) when it is done. - # Benchmarking of the production model Regressive performance tests on the production models are done by running the production models with the new changes of the code and comparing the runtime performance with the reference run. The references are the output files of a run of the production models with the default solver settings. From 4fbd427af0b007c56326244837e84b350038c7c5 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Mon, 12 Aug 2024 14:41:44 +0200 Subject: [PATCH 58/60] revert wrongly-reverted commit --- .github/workflows/pixi_auto_update.yml | 37 +++-- .pre-commit-config.yaml | 4 +- .teamcity/Templates/TestDelwaqCoupling.kt | 2 +- .teamcity/Testbench/Testbench.kt | 2 +- .vscode/settings.json | 3 +- Manifest.toml | 162 ++++++++++++---------- README.md | 7 +- core/Project.toml | 10 ++ core/ext/RibasimMakieExt.jl | 56 ++++++++ core/src/Ribasim.jl | 6 + core/src/callback.jl | 25 +++- core/src/config.jl | 13 +- core/src/model.jl | 1 + core/src/parameter.jl | 8 ++ core/src/write.jl | 28 ++++ core/test/run_models_test.jl | 14 +- docs/guide/examples.ipynb | 41 +++--- docs/index.qmd | 4 + docs/reference/test-models.qmd | 4 +- docs/reference/usage.qmd | 12 ++ mypy.ini | 1 + open-vscode.bat | 1 + pixi.toml | 11 +- python/ribasim/README.md | 4 +- python/ribasim/ribasim/geometry/edge.py | 14 +- python/ribasim/ribasim/input_base.py | 22 +-- python/ribasim/ribasim/model.py | 35 ++++- python/ribasim_api/README.md | 2 +- python/ribasim_api/tests/test_bmi.py | 3 +- ribasim_qgis/ribasim_qgis.py | 2 +- ribasim_qgis/scripts/qgis_testrunner.py | 2 +- ribasim_qgis/tests/core/test_model.py | 2 +- ribasim_qgis/ui_tests/test_load_plugin.py | 2 +- 33 files changed, 390 insertions(+), 150 deletions(-) create mode 100644 core/ext/RibasimMakieExt.jl create mode 100644 open-vscode.bat diff --git a/.github/workflows/pixi_auto_update.yml b/.github/workflows/pixi_auto_update.yml index 83f325315..9bed9eadc 100644 --- a/.github/workflows/pixi_auto_update.yml +++ b/.github/workflows/pixi_auto_update.yml @@ -1,4 +1,8 @@ -name: Pixi auto update +name: Update Pixi lockfile + +permissions: + contents: write + pull-requests: write on: schedule: @@ -8,23 +12,26 @@ on: workflow_dispatch: jobs: - auto-update: + pixi-update: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 + - name: Set up pixi + uses: prefix-dev/setup-pixi@v0.8.1 with: - ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - uses: prefix-dev/setup-pixi@v0.8.1 - with: - pixi-version: "latest" - cache: false - - name: Update pixi lock file - run: pixi update - - uses: peter-evans/create-pull-request@v6 + run-install: false + - name: Update lockfiles + run: | + set -o pipefail + pixi update --json | pixi exec pixi-diff-to-markdown >> diff.md + - name: Create pull request + uses: peter-evans/create-pull-request@v6 with: token: ${{ secrets.GITHUB_TOKEN }} - branch: update/pixi-lock - title: Update pixi lock file - commit-message: "Update `pixi.lock`" - body: Update pixi dependencies to the latest version. - author: "GitHub " + commit-message: Update pixi lockfile + title: Update pixi lockfile + body-path: diff.md + branch: update-pixi + base: main + delete-branch: true + add-paths: pixi.lock diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index cb7cdeac2..165e79145 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -14,7 +14,7 @@ repos: exclude: '.teamcity' - id: trailing-whitespace - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.5.0 + rev: v0.5.5 hooks: - id: ruff types_or: [python, pyi, jupyter] @@ -26,6 +26,6 @@ repos: hooks: - id: nbstripout - repo: https://github.com/crate-ci/typos - rev: v1.22.9 + rev: v1.23.6 hooks: - id: typos diff --git a/.teamcity/Templates/TestDelwaqCoupling.kt b/.teamcity/Templates/TestDelwaqCoupling.kt index e4c98dfe9..b5706648a 100644 --- a/.teamcity/Templates/TestDelwaqCoupling.kt +++ b/.teamcity/Templates/TestDelwaqCoupling.kt @@ -37,4 +37,4 @@ open class TestDelwaqCoupling(platformOs: String) : Template() { } } -object TestDelwaqCouplingWindows : TestDelwaqCoupling("Windows") \ No newline at end of file +object TestDelwaqCouplingWindows : TestDelwaqCoupling("Windows") diff --git a/.teamcity/Testbench/Testbench.kt b/.teamcity/Testbench/Testbench.kt index 2a3c8dd9a..b2a305564 100644 --- a/.teamcity/Testbench/Testbench.kt +++ b/.teamcity/Testbench/Testbench.kt @@ -9,4 +9,4 @@ object Testbench : Project({ name = "Testbench" subProject(IntegrationTestHWS) subProject(RegressionTestODESolve) -}) \ No newline at end of file +}) diff --git a/.vscode/settings.json b/.vscode/settings.json index c823a623f..f8c8eb036 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -23,5 +23,6 @@ "julia.lint.disabledDirs": [ ".pixi" ], - "julia.lint.run": true + "julia.lint.run": true, + "files.insertFinalNewline": true } diff --git a/Manifest.toml b/Manifest.toml index 34a68402a..26dd24095 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,12 +2,12 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "1f635113c3942011817a95f3b34347acc94b7036" +project_hash = "ced48539db7c5827a1e795e5349b519fb599876e" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "6778bcc27496dae5723ff37ee30af451db8b35fe" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" +version = "1.6.2" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -66,10 +66,10 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "5c9b74c973181571deb6442d41e5c902e6b9f38e" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.12.0" +version = "7.15.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -79,6 +79,7 @@ version = "7.12.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -90,6 +91,7 @@ version = "7.12.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -174,9 +176,9 @@ version = "0.1.13" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" +git-tree-sha1 = "7eee164f122511d3e4e1ebadb7956939ea7e1c77" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.5" +version = "1.3.6" [[deps.CodecBzip2]] deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] @@ -235,9 +237,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "c2663c30580894680c793d6b8043567b5f4d4878" +git-tree-sha1 = "cf30651e65a87b20b12601b91169a18838eab2df" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.14" +version = "0.15.16" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" @@ -370,10 +372,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.152.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -385,6 +387,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -398,14 +401,15 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" +version = "3.7.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -425,9 +429,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +git-tree-sha1 = "6bd550abccb7aa156141e10d5367c580af9128af" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.5.11" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -504,6 +508,12 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.Expronicon]] +deps = ["MLStyle", "Pkg", "TOML"] +git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" +uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" +version = "0.8.5" + [[deps.ExproniconLite]] git-tree-sha1 = "1095361e35ea8ad9c660560df4c03c06d5244956" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" @@ -511,9 +521,9 @@ version = "0.10.11" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "bd19de6fe8a3b18888f35e79832f97544684caa7" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.4" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -552,9 +562,9 @@ version = "1.11.0" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[deps.FindFirstFunctions]] -git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +git-tree-sha1 = "fa0ba2042021409deb144f868abafde0b06be8f0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.2.0" +version = "1.3.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] @@ -595,9 +605,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] @@ -628,15 +638,15 @@ version = "1.11.2" [[deps.HiGHS]] deps = ["HiGHS_jll", "MathOptInterface", "PrecompileTools", "SparseArrays"] -git-tree-sha1 = "1042e72e93e5916bbfe034576f2fc2fae73d5ec7" +git-tree-sha1 = "477bde3ee57657239b38d3bacafcb20082d9a1b2" uuid = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" -version = "1.9.1" +version = "1.9.2" [[deps.HiGHS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "656db2048ed731484df16fc91e7232a190e330fb" +git-tree-sha1 = "1f240e0fb1c4cdf39bca5d3881d1758263931ccb" uuid = "8fd58aa0-07eb-5a78-9b36-339c94fd15ea" -version = "1.7.1+0" +version = "1.7.2+0" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] @@ -723,10 +733,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "5fe858cb863e211c6dedc8cce2dc0752d4ab6e2b" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.50" +version = "0.4.51" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -764,9 +774,9 @@ version = "1.22.2" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "a6adc2dcfe4187c40dc7c2c9d2128e326360e90a" +git-tree-sha1 = "5d3a5a206297af3868151bb4a2cf27ebce46f16d" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.32" +version = "0.9.33" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -858,19 +868,19 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2e2dba60642e07c062eb3143770d7e234316772" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "00d9dc2ef7abb0575ec2b59fedbbc5685127e6ea" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.2" +version = "2.31.2" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -941,15 +951,15 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "eeaedcf337f33c039f9f3a209a8db992deefd7e9" +git-tree-sha1 = "1ce1834f9644a8f7c011eb0592b7fd6c42c90653" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "2.4.8" +version = "3.0.1" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" -version = "1.9.4+0" +version = "1.10.0+0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -957,6 +967,11 @@ git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.2.0+0" +[[deps.MLStyle]] +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" +uuid = "d8e11817-5142-5d16-987a-aa16d5891078" +version = "0.4.17" + [[deps.MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" @@ -1018,9 +1033,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" +git-tree-sha1 = "c74e5e7c5f83ccb0bca0377d316d966d296106d4" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.8" +version = "0.7.9" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1033,9 +1048,9 @@ version = "0.2.4" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" +git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.5" +version = "1.4.6" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1117,9 +1132,9 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "0c5d89483f9538efedb3f1c1b72e14d5f65830b0" +git-tree-sha1 = "a8b2d333cd90562b58b977b4033739360b37fb1f" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.86.0" +version = "6.87.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] @@ -1176,9 +1191,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.23" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1228,9 +1243,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.ReTestItems]] deps = ["Dates", "Logging", "LoggingExtras", "Pkg", "Serialization", "Sockets", "Test", "TestEnv"] -git-tree-sha1 = "276cb2fc9c4de5ea62fd50150d9089ab5a40781f" +git-tree-sha1 = "f4a49b06ae830ff83a8743964ed08a805f5bab20" uuid = "817f1d60-ba6b-4fd5-9520-3cf149f6a823" -version = "1.24.0" +version = "1.25.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -1291,17 +1306,24 @@ uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" [[deps.Revise]] -deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "85ddd93ea15dcd8493400600e09104a9e94bb18d" +deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "REPL", "Requires", "UUIDs", "Unicode"] +git-tree-sha1 = "7b7850bb94f75762d567834d7e9802fc22d62f9c" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.5.15" +version = "3.5.18" [[deps.Ribasim]] -deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "ReadOnlyArrays", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimerOutputs", "TranscodingStreams"] +deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LineSearches", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "ReadOnlyArrays", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" version = "2024.10.0" + [deps.Ribasim.extensions] + RibasimMakieExt = ["Makie", "DataFrames"] + + [deps.Ribasim.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" @@ -1336,10 +1358,10 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.45.3+0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "4345907b161ed71358fd343f8d9d178b68bb185a" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "7f0e208db50f5fee2386b6d8dc9608d580059331" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.43.1" +version = "2.48.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1368,9 +1390,9 @@ version = "0.3.8" [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.4.2" [[deps.Scratch]] deps = ["Dates"] @@ -1399,9 +1421,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "58b144f34e44252b2de0acb5a9dbbb7ea5cd75d7" +git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.1" +version = "1.11.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1468,9 +1490,9 @@ version = "2.19.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" +git-tree-sha1 = "ad048e784b816e4de5553a13f1daf148412f3dbd" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.5" +version = "0.3.6" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1568,9 +1590,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" +git-tree-sha1 = "2dd32da03adaf43fd91494e38ef3df0ab2e6c20e" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.26" +version = "0.3.27" [[deps.TOML]] deps = ["Dates"] @@ -1654,9 +1676,9 @@ uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.2.1" [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.9" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -1701,9 +1723,9 @@ version = "1.4.2" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "ad6944a6b3dfd8e95920e48355d3baf510319262" +git-tree-sha1 = "18cfd00df3cbbebf8ea4ec7ea6bbceb3af716bd0" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.6" +version = "1.3.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] diff --git a/README.md b/README.md index 221013bd8..f717493a1 100644 --- a/README.md +++ b/README.md @@ -24,9 +24,8 @@ For most users the [latest release](https://github.com/Deltares/Ribasim/releases - QGIS plugin: [ribasim_qgis.zip](https://github.com/Deltares/Ribasim/releases/latest/download/ribasim_qgis.zip). - Generated testmodels: [generated_testmodels.zip](https://github.com/Deltares/Ribasim/releases/latest/download/generated_testmodels.zip) +# Example model -![Timeseries of -results](https://user-images.githubusercontent.com/4471859/179259333-070dfe18-8f43-4ac4-bb38-013b252e2e4b.png) +Ribasim model of the main water distribution network in the Netherlands. -![Daily water -balance](https://user-images.githubusercontent.com/4471859/179259174-0caccd4a-c51b-449e-873c-17d48cfc8870.png) +![model_on_map](https://github.com/user-attachments/assets/5095a4fe-c336-4380-aa0c-851c851d3895) diff --git a/core/Project.toml b/core/Project.toml index 302293a24..cac0c9446 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -24,6 +24,7 @@ HiGHS = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" Legolas = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd" +LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" LoggingExtras = "e6f89c97-d47a-5376-807f-9c37f3926c36" @@ -40,6 +41,13 @@ TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +[weakdeps] +DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + +[extensions] +RibasimMakieExt = ["Makie", "DataFrames"] + [compat] Accessors = "0.1" Aqua = "0.8" @@ -65,8 +73,10 @@ IterTools = "1.4" JuMP = "1.15" Legolas = "0.5" LinearSolve = "2.24" +LineSearches = "7.2" Logging = "<0.0.1, 1" LoggingExtras = "1" +Makie = "0.21" MetaGraphsNext = "0.6, 0.7" OrdinaryDiffEq = "6.7" PreallocationTools = "0.4" diff --git a/core/ext/RibasimMakieExt.jl b/core/ext/RibasimMakieExt.jl new file mode 100644 index 000000000..97077bab8 --- /dev/null +++ b/core/ext/RibasimMakieExt.jl @@ -0,0 +1,56 @@ +module RibasimMakieExt +using DataFrames: DataFrame +using Makie: Figure, Axis, lines!, axislegend +using Ribasim: Ribasim, Model + +function Ribasim.plot_basin_data!(model::Model, ax::Axis, column::Symbol) + basin_data = DataFrame(Ribasim.basin_table(model)) + for node_id in unique(basin_data.node_id) + group = filter(:node_id => ==(node_id), basin_data) + lines!(ax, group.time, getproperty(group, column); label = "Basin #$node_id") + end + + axislegend(ax) + return nothing +end + +function Ribasim.plot_basin_data(model::Model) + f = Figure() + ax1 = Axis(f[1, 1]; ylabel = "level [m]") + ax2 = Axis(f[2, 1]; xlabel = "time", ylabel = "storage [m³]") + Ribasim.plot_basin_data!(model, ax1, :level) + Ribasim.plot_basin_data!(model, ax2, :storage) + f +end + +function Ribasim.plot_flow!( + model::Model, + ax::Axis, + edge_id::Int32; + skip_conservative_out = false, +) + flow_data = DataFrame(Ribasim.flow_table(model)) + flow_data = filter(:edge_id => ==(edge_id), flow_data) + first_row = first(flow_data) + # Skip outflows of conservative nodes because these are the same as the inflows + if skip_conservative_out && + Ribasim.NodeType.T(first_row.from_node_type) in Ribasim.conservative_nodetypes + return nothing + end + label = "$(first_row.from_node_type) #$(first_row.from_node_id) → $(first_row.to_node_type) #$(first_row.to_node_id)" + lines!(ax, flow_data.time, flow_data.flow_rate; label) + return nothing +end + +function Ribasim.plot_flow(model::Model) + f = Figure() + ax = Axis(f[1, 1]; xlabel = "time", ylabel = "flow rate [m³s⁻¹]") + edge_ids = unique(Ribasim.flow_table(model).edge_id) + for edge_id in edge_ids + Ribasim.plot_flow!(model, ax, edge_id; skip_conservative_out = true) + end + axislegend(ax) + f +end + +end # module RibasimMakieExt diff --git a/core/src/Ribasim.jl b/core/src/Ribasim.jl index f64aaa808..459a1ae73 100644 --- a/core/src/Ribasim.jl +++ b/core/src/Ribasim.jl @@ -98,4 +98,10 @@ include("callback.jl") include("main.jl") include("libribasim.jl") +# Define names used in Makie extension +function plot_basin_data end +function plot_basin_data! end +function plot_flow end +function plot_flow! end + end # module Ribasim diff --git a/core/src/callback.jl b/core/src/callback.jl index 927fddaf8..05aa766e7 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -1,4 +1,3 @@ - """ Create the different callbacks that are used to store results and feed the simulation with new data. The different callbacks @@ -44,6 +43,12 @@ function create_callbacks( save_flow_cb = SavingCallback(save_flow, saved_flow; saveat, save_start = false) push!(callbacks, save_flow_cb) + # save solver stats + saved_solver_stats = SavedValues(Float64, SolverStats) + solver_stats_cb = + SavingCallback(save_solver_stats, saved_solver_stats; saveat, save_start = true) + push!(callbacks, solver_stats_cb) + # interpolate the levels saved_subgrid_level = SavedValues(Float64, Vector{Float64}) if config.results.subgrid @@ -59,12 +64,28 @@ function create_callbacks( discrete_control_cb = FunctionCallingCallback(apply_discrete_control!) push!(callbacks, discrete_control_cb) - saved = SavedResults(saved_flow, saved_vertical_flux, saved_subgrid_level) + saved = SavedResults( + saved_flow, + saved_vertical_flux, + saved_subgrid_level, + saved_solver_stats, + ) callback = CallbackSet(callbacks...) return callback, saved end +function save_solver_stats(u, t, integrator) + (; stats) = integrator.sol + (; + time = t, + rhs_calls = stats.nf, + linear_solves = stats.nsolve, + accepted_timesteps = stats.naccept, + rejected_timesteps = stats.nreject, + ) +end + function check_negative_storage(u, t, integrator)::Nothing (; basin) = integrator.p (; node_id) = basin diff --git a/core/src/config.jl b/core/src/config.jl index 084bb4040..11e97608d 100644 --- a/core/src/config.jl +++ b/core/src/config.jl @@ -11,10 +11,13 @@ module config using Configurations: Configurations, @option, from_toml, @type_alias using DataStructures: DefaultDict using Dates: DateTime +using LineSearches: BackTracking using Logging: LogLevel, Debug, Info, Warn, Error using ..Ribasim: Ribasim, isnode, nodetype using OrdinaryDiffEq: OrdinaryDiffEqAlgorithm, + OrdinaryDiffEqNewtonAdaptiveAlgorithm, + NLNewton, Euler, ImplicitEuler, KenCarp4, @@ -236,11 +239,17 @@ function algorithm(solver::Solver)::OrdinaryDiffEqAlgorithm error("Given solver algorithm $(solver.algorithm) not supported.\n\ Available options are: ($(options)).") end + kwargs = Dict{Symbol, Any}() + if algotype <: OrdinaryDiffEqNewtonAdaptiveAlgorithm + kwargs[:nlsolve] = NLNewton(; relax = BackTracking()) + end # not all algorithms support this keyword + kwargs[:autodiff] = solver.autodiff try - algotype(; solver.autodiff) + algotype(; kwargs...) catch - algotype() + pop!(kwargs, :autodiff) + algotype(; kwargs...) end end diff --git a/core/src/model.jl b/core/src/model.jl index 2a12beea8..c3d3b922e 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -2,6 +2,7 @@ struct SavedResults{V1 <: ComponentVector{Float64}} flow::SavedValues{Float64, SavedFlow} vertical_flux::SavedValues{Float64, V1} subgrid_level::SavedValues{Float64, Vector{Float64}} + solver_stats::SavedValues{Float64, SolverStats} end """ diff --git a/core/src/parameter.jl b/core/src/parameter.jl index dcecbad96..d4bfbe8c5 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -1,3 +1,11 @@ +const SolverStats = @NamedTuple{ + time::Float64, + rhs_calls::Int, + linear_solves::Int, + accepted_timesteps::Int, + rejected_timesteps::Int, +} + # EdgeType.flow and NodeType.FlowBoundary @enumx EdgeType flow control none @eval @enumx NodeType $(config.nodetypes...) diff --git a/core/src/write.jl b/core/src/write.jl index 5cae20042..179897883 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -44,6 +44,11 @@ function write_results(model::Model)::Model path = results_path(config, RESULTS_FILENAME.subgrid_level) write_arrow(path, table, compress; remove_empty_table) + # solver stats + table = solver_stats_table(model) + path = results_path(config, RESULTS_FILENAME.solver_stats) + write_arrow(path, table, compress; remove_empty_table) + @debug "Wrote results." return model end @@ -56,6 +61,7 @@ const RESULTS_FILENAME = ( allocation = "allocation.arrow", allocation_flow = "allocation_flow.arrow", subgrid_level = "subgrid_level.arrow", + solver_stats = "solver_stats.arrow", ) "Get the storage and level of all basins as matrices of nbasin × ntime" @@ -183,6 +189,28 @@ function basin_table( ) end +function solver_stats_table( + model::Model, +)::@NamedTuple{ + time::Vector{DateTime}, + rhs_calls::Vector{Int}, + linear_solves::Vector{Int}, + accepted_timesteps::Vector{Int}, + rejected_timesteps::Vector{Int}, +} + solver_stats = StructVector(model.saved.solver_stats.saveval) + (; + time = datetime_since.( + solver_stats.time[1:(end - 1)], + model.integrator.p.starttime, + ), + rhs_calls = diff(solver_stats.rhs_calls), + linear_solves = diff(solver_stats.linear_solves), + accepted_timesteps = diff(solver_stats.accepted_timesteps), + rejected_timesteps = diff(solver_stats.rejected_timesteps), + ) +end + "Create a flow result table from the saved data" function flow_table( model::Model, diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index ca3bac404..fdf31bf77 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -29,10 +29,12 @@ flow_bytes = read(normpath(dirname(toml_path), "results/flow.arrow")) basin_bytes = read(normpath(dirname(toml_path), "results/basin.arrow")) subgrid_bytes = read(normpath(dirname(toml_path), "results/subgrid_level.arrow")) + solver_stats_bytes = read(normpath(dirname(toml_path), "results/solver_stats.arrow")) flow = Arrow.Table(flow_bytes) basin = Arrow.Table(basin_bytes) subgrid = Arrow.Table(subgrid_bytes) + solver_stats = Arrow.Table(solver_stats_bytes) @testset "Schema" begin @test Tables.schema(flow) == Tables.Schema( @@ -83,6 +85,10 @@ (:time, :subgrid_id, :subgrid_level), (DateTime, Int32, Float64), ) + @test Tables.schema(solver_stats) == Tables.Schema( + (:time, :rhs_calls, :linear_solves, :accepted_timesteps, :rejected_timesteps), + (DateTime, Int, Int, Int, Int), + ) end @testset "Results size" begin @@ -235,7 +241,7 @@ end @test allunique(Ribasim.tsaves(model)) precipitation = Ribasim.get_tmp(model.integrator.p.basin.vertical_flux, 0).precipitation @test length(precipitation) == 4 - @test model.integrator.sol.u[end] ≈ Float32[472.02444, 472.02252, 367.6387, 1427.981] skip = + @test model.integrator.sol.u[end] ≈ Float32[471.9218, 471.9199, 363.6981, 1427.962] skip = Sys.isapple() end @@ -271,13 +277,13 @@ end @test successful_retcode(dense_fdm) @test dense_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 0.1 - @test sparse_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] - @test dense_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 0.1 + @test sparse_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 + @test dense_fdm.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 config = Ribasim.Config(toml_path; solver_algorithm = "Rodas5", solver_autodiff = true) time_ad = Ribasim.run(config) @test successful_retcode(time_ad) - @test time_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 1 + @test time_ad.integrator.sol.u[end] ≈ sparse_ad.integrator.sol.u[end] atol = 4 end @testitem "TabulatedRatingCurve model" begin diff --git a/docs/guide/examples.ipynb b/docs/guide/examples.ipynb index 307dbbe53..448d3a0e0 100644 --- a/docs/guide/examples.ipynb +++ b/docs/guide/examples.ipynb @@ -398,7 +398,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model. You can open a terminal and run it from there::\n", + "## Running a model\n", + "Now run the model. You can open a terminal and run it from there. For example, to run the basic model, input:\n", "\n", "```bash\n", "ribasim basic/ribasim.toml\n", @@ -430,7 +431,8 @@ "df_basin_wide = df_basin.pivot_table(\n", " index=\"time\", columns=\"node_id\", values=[\"storage\", \"level\"]\n", ")\n", - "df_basin_wide[\"level\"].plot()" + "ax = df_basin_wide[\"level\"].plot()\n", + "ax.set_ylabel(\"level [m]\");" ] }, { @@ -443,7 +445,8 @@ "df_flow[\"edge\"] = list(zip(df_flow.from_node_id, df_flow.to_node_id))\n", "df_flow[\"flow_m3d\"] = df_flow.flow_rate * 86400\n", "ax = df_flow.pivot_table(index=\"time\", columns=\"edge\", values=\"flow_m3d\").plot()\n", - "ax.legend(bbox_to_anchor=(1.3, 1), title=\"Edge\")" + "ax.legend(bbox_to_anchor=(1.3, 1), title=\"Edge\")\n", + "ax.set_ylabel(\"flow [m³day⁻¹]\");" ] }, { @@ -710,8 +713,8 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim level_range/ribasim.toml`.\n", - "After running the model, read back the results:\n" + "Now run the model (for running instructions see [here](#running-a-model)).\n", + "After running the model, read back the results:" ] }, { @@ -991,7 +994,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim pid_control/ribasim.toml`.\n", + "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the results:\n" ] }, @@ -1272,7 +1275,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim allocation_example/ribasim.toml`.\n", + "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the results:\n" ] }, @@ -1559,7 +1562,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim level_demand/ribasim.toml`.\n", + "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the results:\n" ] }, @@ -1955,6 +1958,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ + "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the result to plot the flow of each polder basin." ] }, @@ -1986,9 +1990,11 @@ "outputs": [], "source": [ "df_input = df_pivot.loc[:, [(1, 2), (13, 1)]]\n", - "df_input.plot(ylim=[-1.0, 20.0])\n", + "ax = df_input.plot(ylim=[-1.0, 20.0])\n", + "ax.set_ylabel(\"flow [m³day⁻¹]\")\n", "df_weirs = df_pivot.loc[:, [(4, 5), (6, 7), (8, 9), (10, 11)]]\n", - "df_weirs.plot(ylim=[-1.0, 15.0])" + "ax = df_weirs.plot(ylim=[-1.0, 15.0])\n", + "ax.set_ylabel(\"flow [m³day⁻¹]\");" ] }, { @@ -2015,7 +2021,9 @@ "df_basin_wide = df_basin.pivot_table(\n", " index=\"time\", columns=\"node_id\", values=[\"storage\", \"level\", \"vertical_flux\"]\n", ")\n", - "df_basin_wide[\"vertical_flux\"].plot()" + "df_basin_wide[\"vertical_flux\"] *= 86400\n", + "ax = df_basin_wide[\"vertical_flux\"].plot()\n", + "ax.set_ylabel(\"vertical flux [m³day⁻¹]\");" ] }, { @@ -2031,7 +2039,8 @@ "metadata": {}, "outputs": [], "source": [ - "df_basin_wide[\"level\"].plot()" + "ax = df_basin_wide[\"level\"].plot()\n", + "ax.set_ylabel(\"level [m]\");" ] }, { @@ -2285,7 +2294,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim outlet_continuous_control/ribasim.toml`.\n", + "Now run the model (for running instructions see [here](#running-a-model)).\n", "After running the model, read back the results:" ] }, @@ -2296,7 +2305,6 @@ "outputs": [], "source": [ "df_flow = pd.read_feather(datadir / \"outlet_continuous_control/results/flow.arrow\")\n", - "\n", "fig, ax = plt.subplots()\n", "\n", "\n", @@ -2311,13 +2319,14 @@ " x=\"time\",\n", " y=\"flow_rate\",\n", " ax=ax,\n", - " label=f\"{from_node_type} #{from_node_id} -> {to_node_type} #{to_node_id}\",\n", + " label=f\"{from_node_type} #{from_node_id} → {to_node_type} #{to_node_id}\",\n", " )\n", "\n", "\n", "plot_edge_flow(\"LinearResistance\", 1, \"Basin\", 1)\n", "plot_edge_flow(\"Basin\", 1, \"Outlet\", 1)\n", - "plot_edge_flow(\"Basin\", 1, \"Outlet\", 2)" + "plot_edge_flow(\"Basin\", 1, \"Outlet\", 2)\n", + "ax.set_ylabel(\"flow [m³s⁻¹]\");" ] } ], diff --git a/docs/index.qmd b/docs/index.qmd index 86290d81d..9deb57259 100644 --- a/docs/index.qmd +++ b/docs/index.qmd @@ -12,3 +12,7 @@ Ribasim is developed and supported by [Deltares](https://www.deltares.nl). The first version of Ribasim is developed by Deltares as part of a consortium with funding from TKI by Deltares for the Dutch watersystem. ![](https://publicwiki.deltares.nl/download/attachments/232326570/image-2023-3-7_16-39-24-1.png?version=1&modificationDate=1678203564884&api=v2){fig-alt="TKI partner logos"} + +Ribasim model of the main water distribution network in the Netherlands. + +HWS on map diff --git a/docs/reference/test-models.qmd b/docs/reference/test-models.qmd index 81891cd1d..8ca33d0c0 100644 --- a/docs/reference/test-models.qmd +++ b/docs/reference/test-models.qmd @@ -14,11 +14,11 @@ for model_name, model_constructor in ribasim_testmodels.constructors.items(): continue model = model_constructor() - fig, ax = plt.subplots() + fig, ax = plt.subplots(figsize = (6, 4)) model.plot(ax) ax.set_title(label=model_name, loc="left") fig.text(0, 1, model_constructor.__doc__) - fig.tight_layout() + ax.axis('off') plt.show() plt.close(fig) ``` diff --git a/docs/reference/usage.qmd b/docs/reference/usage.qmd index ce18f2a64..1da163aec 100644 --- a/docs/reference/usage.qmd +++ b/docs/reference/usage.qmd @@ -316,3 +316,15 @@ column | type time | DateTime subgrid_id | Int32 subgrid_level | Float64 + +## Solver statistics - `solver_stats.arrow` + +This result file contains statistics about the solver, which can give an insight into how well the solver is performing over time. The data is solved by `saveat` (see [configuration file](#configuration-file)). `water_balance` refers to the right-hand-side function of the system of differential equations solved by the Ribasim core. + +column | type +--------------------| ----- +time | DateTime +water_balance_calls | Int +linear_solves | Int +accepted_timesteps | Int +rejected_timesteps | Int diff --git a/mypy.ini b/mypy.ini index f5510b114..db8f09ecd 100644 --- a/mypy.ini +++ b/mypy.ini @@ -10,6 +10,7 @@ extra_checks = True disallow_subclassing_any = True disallow_untyped_decorators = True disallow_any_generics = True +mypy_path = .pixi/envs/$PIXI_ENVIRONMENT_NAME/Library/python,.pixi/envs/$PIXI_ENVIRONMENT_NAME/share/qgis/python # Ignore errors for imported packages. [mypy-console.*] diff --git a/open-vscode.bat b/open-vscode.bat new file mode 100644 index 000000000..ae86837bf --- /dev/null +++ b/open-vscode.bat @@ -0,0 +1 @@ +pixi run --environment=dev code . | exit diff --git a/pixi.toml b/pixi.toml index 61d907e85..f3be4a2b6 100644 --- a/pixi.toml +++ b/pixi.toml @@ -21,8 +21,15 @@ test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=r [feature.dev.tasks] # Installation install-julia = "juliaup add 1.10.4 && juliaup override unset && juliaup override set 1.10.4" +# Workaround rare issue, only on Windows, hence uses exit 0 to ignore errors +# Upstream issue: https://github.com/JuliaLang/julia/issues/52272 +reset-artifact-permissions = "icacls $homedrive/$homepath/.julia/artifacts /q /c /t /reset;exit 0" install-pre-commit = "pre-commit install" -install-ci = { depends_on = ["install-julia", "update-registry-julia"] } +install-ci = { depends_on = [ + "reset-artifact-permissions", + "install-julia", + "update-registry-julia", +] } install = { depends_on = [ "install-ci", "install-qgis-plugins", @@ -77,7 +84,7 @@ lint = { depends_on = [ build = { "cmd" = "julia --project build.jl", cwd = "build", depends_on = [ "generate-testmodels", "initialize-julia", -], env = {JULIA_SSL_CA_ROOTS_PATH = ""} } +], env = { JULIA_SSL_CA_ROOTS_PATH = "" } } remove-artifacts = "julia --eval 'rm(joinpath(Base.DEPOT_PATH[1], \"artifacts\"), force=true, recursive=true)'" # Tests test-ribasim-cli = "pytest --numprocesses=4 --basetemp=build/tests/temp --junitxml=report.xml build/tests" diff --git a/python/ribasim/README.md b/python/ribasim/README.md index feac02bb8..f424089ac 100644 --- a/python/ribasim/README.md +++ b/python/ribasim/README.md @@ -13,8 +13,8 @@ setup is fully reproducible. The package is [registered in PyPI](https://pypi.org/project/ribasim/) and can therefore be installed with `pip install ribasim`. -For documentation please see the [examples](https://deltares.github.io/Ribasim/python/examples.html) and [API reference](https://deltares.github.io/Ribasim/python/reference/). +For documentation please see the https://deltares.github.io/Ribasim/ and [API reference](https://deltares.github.io/Ribasim/reference/python/) # Contributing -For the developer docs please have a look at https://deltares.github.io/Ribasim/python/developer.html +For the developer docs please have a look at https://deltares.github.io/Ribasim/dev/. diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index 0b7162ab6..ce1f09a91 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -107,7 +107,7 @@ def add( ) self.df.index.name = "fid" - def get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: + def _get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: assert self.df is not None return (self.df.edge_type == edge_type).to_numpy() @@ -118,6 +118,14 @@ def sort(self): self.df.sort_index(inplace=True) def plot(self, **kwargs) -> Axes: + """Plot the edges of the model. + + Parameters + ---------- + **kwargs : Dict + Supported: 'ax', 'color_flow', 'color_control' + """ + assert self.df is not None kwargs = kwargs.copy() # Avoid side-effects ax = kwargs.get("ax", None) @@ -141,8 +149,8 @@ def plot(self, **kwargs) -> Axes: kwargs_control["color"] = color_control kwargs_control["label"] = "Control edge" - where_flow = self.get_where_edge_type("flow") - where_control = self.get_where_edge_type("control") + where_flow = self._get_where_edge_type("flow") + where_control = self._get_where_edge_type("control") if not self.df[where_flow].empty: self.df[where_flow].plot(**kwargs_flow) diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index b5c8ee89d..bae678a09 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -92,7 +92,7 @@ class BaseModel(PydanticBaseModel): ) @classmethod - def fields(cls) -> list[str]: + def _fields(cls) -> list[str]: """Return the names of the fields contained in the Model.""" return list(cls.model_fields.keys()) @@ -117,7 +117,7 @@ class FileModel(BaseModel, ABC): @model_validator(mode="before") @classmethod - def check_filepath(cls, value: Any) -> Any: + def _check_filepath(cls, value: Any) -> Any: # Enable initialization with a Path. if isinstance(value, dict): # Pydantic Model init requires a dict @@ -173,7 +173,7 @@ class TableModel(FileModel, Generic[TableT]): @field_validator("df") @classmethod - def check_extra_columns(cls, v: DataFrame[TableT]): + def _check_extra_columns(cls, v: DataFrame[TableT]): """Allow only extra columns with `meta_` prefix.""" if isinstance(v, (pd.DataFrame, gpd.GeoDataFrame)): for colname in v.columns: @@ -187,7 +187,7 @@ def check_extra_columns(cls, v: DataFrame[TableT]): return v @model_serializer - def set_model(self) -> str | None: + def _set_model(self) -> str | None: return str(self.filepath.name) if self.filepath is not None else None @classmethod @@ -213,14 +213,14 @@ def tablename(cls) -> str: @model_validator(mode="before") @classmethod - def check_dataframe(cls, value: Any) -> Any: + def _check_dataframe(cls, value: Any) -> Any: # Enable initialization with a DataFrame. if isinstance(value, pd.DataFrame | gpd.GeoDataFrame): value = {"df": value} return value - def node_ids(self) -> set[int]: + def _node_ids(self) -> set[int]: node_ids: set[int] = set() if self.df is not None and "node_id" in self.df.columns: node_ids.update(self.df["node_id"]) @@ -394,7 +394,7 @@ class ChildModel(BaseModel): _parent_field: str | None = None @model_validator(mode="after") - def check_parent(self) -> "ChildModel": + def _check_parent(self) -> "ChildModel": if self._parent is not None: self._parent.model_fields_set.update({self._parent_field}) return self @@ -432,7 +432,7 @@ def _layername(cls, field: str) -> str: return f"{cls.get_input_type()}{delimiter}{field}" def _tables(self) -> Generator[TableModel[Any], Any, None]: - for key in self.fields(): + for key in self._fields(): attr = getattr(self, key) if ( isinstance(attr, TableModel) @@ -441,10 +441,10 @@ def _tables(self) -> Generator[TableModel[Any], Any, None]: ): yield attr - def node_ids(self) -> set[int]: + def _node_ids(self) -> set[int]: node_ids: set[int] = set() for table in self._tables(): - node_ids.update(table.node_ids()) + node_ids.update(table._node_ids()) return node_ids def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): @@ -457,7 +457,7 @@ def _repr_content(self) -> str: Skip "empty" attributes: when the dataframe of a TableModel is None. """ content = [] - for field in self.fields(): + for field in self._fields(): attr = getattr(self, field) if isinstance(attr, TableModel): if attr.df is not None: diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 3aac4c4be..8327adc29 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -98,7 +98,7 @@ class Model(FileModel): edge: EdgeTable = Field(default_factory=EdgeTable) @model_validator(mode="after") - def set_node_parent(self) -> "Model": + def _set_node_parent(self) -> "Model": for ( k, v, @@ -108,14 +108,14 @@ def set_node_parent(self) -> "Model": return self @model_validator(mode="after") - def ensure_edge_table_is_present(self) -> "Model": + def _ensure_edge_table_is_present(self) -> "Model": if self.edge.df is None: self.edge.df = GeoDataFrame[EdgeSchema]() self.edge.df.set_geometry("geometry", inplace=True, crs=self.crs) return self @field_serializer("input_dir", "results_dir") - def serialize_path(self, path: Path) -> str: + def _serialize_path(self, path: Path) -> str: return str(path) def model_post_init(self, __context: Any) -> None: @@ -132,7 +132,7 @@ def __repr__(self) -> str: """ content = ["ribasim.Model("] INDENT = " " - for field in self.fields(): + for field in self._fields(): attr = getattr(self, field) if isinstance(attr, EdgeTable): content.append(f"{INDENT}{field}=Edge(...),") @@ -289,7 +289,7 @@ def _load(cls, filepath: Path | None) -> dict[str, Any]: return {} @model_validator(mode="after") - def reset_contextvar(self) -> "Model": + def _reset_contextvar(self) -> "Model": # Drop database info context_file_loading.set({}) return self @@ -366,7 +366,12 @@ def plot_control_listen(self, ax): ) return - def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: + def plot( + self, + ax=None, + indicate_subnetworks: bool = True, + aspect_ratio_bound: float = 0.33, + ) -> Any: """Plot the nodes, edges and allocation networks of the model. Parameters @@ -375,6 +380,9 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: Axes on which to draw the plot. indicate_subnetworks : bool Whether to indicate subnetworks with a convex hull backdrop. + aspect_ratio_bound : float + The maximal aspect ratio in (0,1). The smaller this number, the further the figure + shape is allowed to be from a square Returns ------- @@ -402,6 +410,21 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: ax.legend(handles, labels, loc="lower left", bbox_to_anchor=(1, 0.5)) + # Enforce aspect ratio bound + xlim = ax.get_xlim() + ylim = ax.get_ylim() + xsize = xlim[1] - xlim[0] + ysize = ylim[1] - ylim[0] + + if ysize < aspect_ratio_bound * xsize: + y_mid = (ylim[0] + ylim[1]) / 2 + ysize_new = aspect_ratio_bound * xsize + ax.set_ylim(y_mid - ysize_new / 2, y_mid + ysize_new / 2) + elif xsize < aspect_ratio_bound * ysize: + x_mid = (xlim[0] + xlim[1]) / 2 + xsize_new = aspect_ratio_bound * ysize + ax.set_xlim(x_mid - xsize_new / 2, x_mid + xsize_new / 2) + return ax def to_xugrid(self, add_flow: bool = False, add_allocation: bool = False): diff --git a/python/ribasim_api/README.md b/python/ribasim_api/README.md index 8dd3c97a7..f18cc6f81 100644 --- a/python/ribasim_api/README.md +++ b/python/ribasim_api/README.md @@ -20,4 +20,4 @@ conda install -c conda-forge ribasim-api # Contributing -For the developer docs please have a look at https://deltares.github.io/Ribasim/contribute/python.html +For the developer docs please have a look at https://deltares.github.io/Ribasim/dev/. diff --git a/python/ribasim_api/tests/test_bmi.py b/python/ribasim_api/tests/test_bmi.py index dbb4e5f5b..23aa3e772 100644 --- a/python/ribasim_api/tests/test_bmi.py +++ b/python/ribasim_api/tests/test_bmi.py @@ -119,8 +119,9 @@ def test_get_value_ptr_subgrid(libribasim, two_basin, tmp_path): libribasim.update_until(86400.0) # Subgrid level + libribasim.update_subgrid_level() actual_subgrid_level = libribasim.get_value_ptr("basin.subgrid_level") - expected_subgrid_level = np.array([np.nan, np.nan]) + expected_subgrid_level = np.array([2.17, 0.006142]) assert_array_almost_equal(actual_subgrid_level, expected_subgrid_level) diff --git a/ribasim_qgis/ribasim_qgis.py b/ribasim_qgis/ribasim_qgis.py index c2a8462ca..3957a2f06 100644 --- a/ribasim_qgis/ribasim_qgis.py +++ b/ribasim_qgis/ribasim_qgis.py @@ -8,7 +8,7 @@ from qgis.PyQt.QtWidgets import QAction -class RibasimDockWidget(QgsDockWidget): # type: ignore +class RibasimDockWidget(QgsDockWidget): def closeEvent(self, event) -> None: # TODO: if we implement talking to a Julia server, shut it down here. event.accept() diff --git a/ribasim_qgis/scripts/qgis_testrunner.py b/ribasim_qgis/scripts/qgis_testrunner.py index d8f71bb22..726341abc 100644 --- a/ribasim_qgis/scripts/qgis_testrunner.py +++ b/ribasim_qgis/scripts/qgis_testrunner.py @@ -87,7 +87,7 @@ def __get_test_function(test_module_name): from qgis.PyQt.QtCore import QDir -class QgsProjectBadLayerDefaultHandler(QgsProjectBadLayerHandler): # type: ignore +class QgsProjectBadLayerDefaultHandler(QgsProjectBadLayerHandler): def handleBadLayers(self, layers, dom): pass diff --git a/ribasim_qgis/tests/core/test_model.py b/ribasim_qgis/tests/core/test_model.py index 9f780385f..f0e43eb5a 100644 --- a/ribasim_qgis/tests/core/test_model.py +++ b/ribasim_qgis/tests/core/test_model.py @@ -8,7 +8,7 @@ ) -class TestModel(unittest.TestCase): # type: ignore +class TestModel(unittest.TestCase): tests_folder_path = Path(__file__).parent.parent.resolve() data_folder_path = tests_folder_path / "data" diff --git a/ribasim_qgis/ui_tests/test_load_plugin.py b/ribasim_qgis/ui_tests/test_load_plugin.py index b37f9c2a4..6cef3bb33 100644 --- a/ribasim_qgis/ui_tests/test_load_plugin.py +++ b/ribasim_qgis/ui_tests/test_load_plugin.py @@ -2,7 +2,7 @@ from qgis.utils import iface, plugins -class TestPlugin(unittest.TestCase): # type: ignore +class TestPlugin(unittest.TestCase): def test_plugin_is_loaded(self): """Test plugin is properly loaded and appears in QGIS plugins.""" plugin = plugins.get("ribasim_qgis") From 2ddc305fb7182b2ba176ca55515016c1ac44d25a Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Tue, 13 Aug 2024 08:53:49 +0200 Subject: [PATCH 59/60] fix the path to models after the merge of two API --- .gitignore | 1 - core/regression_test/regression_test.jl | 20 ++++++++++++-------- utils/get_benchmark.py | 2 +- 3 files changed, 13 insertions(+), 10 deletions(-) diff --git a/.gitignore b/.gitignore index 6c4d32f7e..50768a135 100644 --- a/.gitignore +++ b/.gitignore @@ -150,7 +150,6 @@ report.xml # Designated working dir for working on Ribasim models models/ playground/output -benchmark/ # Ruff .ruff_cache diff --git a/core/regression_test/regression_test.jl b/core/regression_test/regression_test.jl index 4708cdd41..2610849d7 100644 --- a/core/regression_test/regression_test.jl +++ b/core/regression_test/regression_test.jl @@ -60,8 +60,8 @@ end @test ispath(toml_path) config = Ribasim.Config(toml_path) - flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/basic/flow.arrow")) - basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/basic/basin.arrow")) + flow_bytes_bench = read(normpath(@__DIR__, "../../models/benchmark/basic/flow.arrow")) + basin_bytes_bench = read(normpath(@__DIR__, "../../models/benchmark/basic/basin.arrow")) flow_bench = Arrow.Table(flow_bytes_bench) basin_bench = Arrow.Table(basin_bytes_bench) @@ -122,8 +122,10 @@ end @test ispath(toml_path) config = Ribasim.Config(toml_path) - flow_bytes_bench = read(normpath(@__DIR__, "../../benchmark/pid_control/flow.arrow")) - basin_bytes_bench = read(normpath(@__DIR__, "../../benchmark/pid_control/basin.arrow")) + flow_bytes_bench = + read(normpath(@__DIR__, "../../models/benchmark/pid_control/flow.arrow")) + basin_bytes_bench = + read(normpath(@__DIR__, "../../modesl/benchmark/pid_control/basin.arrow")) flow_bench = Arrow.Table(flow_bytes_bench) basin_bench = Arrow.Table(basin_bytes_bench) @@ -187,10 +189,12 @@ end @test ispath(toml_path) config = Ribasim.Config(toml_path) - flow_bytes_bench = - read(normpath(@__DIR__, "../../benchmark/subnetworks_with_sources/flow.arrow")) - basin_bytes_bench = - read(normpath(@__DIR__, "../../benchmark/subnetworks_with_sources/basin.arrow")) + flow_bytes_bench = read( + normpath(@__DIR__, "../../models/benchmark/subnetworks_with_sources/flow.arrow"), + ) + basin_bytes_bench = read( + normpath(@__DIR__, "../../models/benchmark/subnetworks_with_sources/basin.arrow"), + ) flow_bench = Arrow.Table(flow_bytes_bench) basin_bench = Arrow.Table(basin_bytes_bench) diff --git a/utils/get_benchmark.py b/utils/get_benchmark.py index 4dfc77137..b54809eb8 100644 --- a/utils/get_benchmark.py +++ b/utils/get_benchmark.py @@ -28,6 +28,6 @@ for obj in objects: try: - myClient.fget_object(bucketName, obj.object_name, "" + obj.object_name) + myClient.fget_object(bucketName, obj.object_name, "models/" + obj.object_name) except S3Error as e: print(f"Error occurred: {e}") From fc751e4987b9aa33d3863c0c5cb45f634d12ddf4 Mon Sep 17 00:00:00 2001 From: Jingru Feng Date: Tue, 13 Aug 2024 14:38:23 +0200 Subject: [PATCH 60/60] final fixes --- .idea/.gitignore | 3 --- .teamcity/Templates/RegressionTest.kt | 2 +- core/regression_test/regression_test.jl | 3 +-- 3 files changed, 2 insertions(+), 6 deletions(-) delete mode 100644 .idea/.gitignore diff --git a/.idea/.gitignore b/.idea/.gitignore deleted file mode 100644 index 26d33521a..000000000 --- a/.idea/.gitignore +++ /dev/null @@ -1,3 +0,0 @@ -# Default ignored files -/shelf/ -/workspace.xml diff --git a/.teamcity/Templates/RegressionTest.kt b/.teamcity/Templates/RegressionTest.kt index cfe794b20..11ddd9a1d 100644 --- a/.teamcity/Templates/RegressionTest.kt +++ b/.teamcity/Templates/RegressionTest.kt @@ -53,7 +53,7 @@ open class RegressionTest (platformOs: String) : Template() { """.trimIndent() } script { - name = "Run integration tests" + name = "Run regression tests" id = "RUNNER_1511" workingDir = "ribasim" scriptContent = header + diff --git a/core/regression_test/regression_test.jl b/core/regression_test/regression_test.jl index 2610849d7..ae4bf20de 100644 --- a/core/regression_test/regression_test.jl +++ b/core/regression_test/regression_test.jl @@ -125,7 +125,7 @@ end flow_bytes_bench = read(normpath(@__DIR__, "../../models/benchmark/pid_control/flow.arrow")) basin_bytes_bench = - read(normpath(@__DIR__, "../../modesl/benchmark/pid_control/basin.arrow")) + read(normpath(@__DIR__, "../../models/benchmark/pid_control/basin.arrow")) flow_bench = Arrow.Table(flow_bytes_bench) basin_bench = Arrow.Table(basin_bytes_bench) @@ -233,7 +233,6 @@ end @test flow.from_node_id == flow_bench.from_node_id @test flow.to_node_type == flow_bench.to_node_type @test flow.to_node_id == flow_bench.to_node_id - @test all(q -> abs(q) < 0.1, flow.flow_rate - flow_bench.flow_rate) # Testbench for basin.arrow @test basin.time == basin_bench.time