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Dockerfile.old
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FROM nvcr.io/nvidia/modulus/modulus:24.01
USER root
### BASICS ###
# Technical Environment Variables
ENV \
SHELL="/bin/bash" \
HOME="/root" \
# Nobteook server user: https://github.com/jupyter/docker-stacks/blob/master/base-notebook/Dockerfile#L33
NB_USER="root" \
USER_GID=0 \
XDG_CACHE_HOME="/root/.cache/" \
XDG_RUNTIME_DIR="/tmp" \
DISPLAY=":1" \
TERM="xterm" \
DEBIAN_FRONTEND="noninteractive" \
RESOURCES_PATH="/resources" \
SSL_RESOURCES_PATH="/resources/ssl" \
WORKSPACE_HOME="/workspace"
WORKDIR $HOME
# Make folders
RUN \
mkdir $RESOURCES_PATH && chmod a+rwx $RESOURCES_PATH && \
mkdir $SSL_RESOURCES_PATH && chmod a+rwx $SSL_RESOURCES_PATH
# Layer cleanup script
COPY ml-workspace/resources/scripts/clean-layer.sh /usr/bin/clean-layer.sh
COPY ml-workspace/resources/scripts/fix-permissions.sh /usr/bin/fix-permissions.sh
# Make clean-layer and fix-permissions executable
RUN \
chmod a+rwx /usr/bin/clean-layer.sh && \
chmod a+rwx /usr/bin/fix-permissions.sh
# Generate and Set locals
# https://stackoverflow.com/questions/28405902/how-to-set-the-locale-inside-a-debian-ubuntu-docker-container#38553499
RUN \
apt-get update && \
apt-get install -y locales && \
# install locales-all?
sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen && \
locale-gen && \
dpkg-reconfigure --frontend=noninteractive locales && \
update-locale LANG=en_US.UTF-8 && \
# Cleanup
clean-layer.sh
ENV LC_ALL="en_US.UTF-8" \
LANG="en_US.UTF-8" \
LANGUAGE="en_US:en"
# Install basics
RUN \
# TODO add repos?
# add-apt-repository ppa:apt-fast/stable
# add-apt-repository 'deb http://security.ubuntu.com/ubuntu xenial-security main'
apt-get update --fix-missing && \
apt-get install -y sudo apt-utils && \
apt-get upgrade -y && \
apt-get update && \
apt-get install -y --no-install-recommends \
# This is necessary for apt to access HTTPS sources:
apt-transport-https \
gnupg-agent \
gpg-agent \
gnupg2 \
ca-certificates \
build-essential \
pkg-config \
software-properties-common \
lsof \
net-tools \
libcurl4 \
curl \
wget \
cron \
openssl \
iproute2 \
psmisc \
tmux \
dpkg-sig \
uuid-dev \
csh \
xclip \
clinfo \
time \
libssl-dev \
libgdbm-dev \
libncurses5-dev \
libncursesw5-dev \
# required by pyenv
libreadline-dev \
libedit-dev \
xz-utils \
gawk \
# Simplified Wrapper and Interface Generator (5.8MB) - required by lots of py-libs
swig \
# Graphviz (graph visualization software) (4MB)
graphviz libgraphviz-dev \
# Terminal multiplexer
screen \
# Editor
nano \
# Find files
locate \
# Dev Tools
sqlite3 \
# XML Utils
xmlstarlet \
# GNU parallel
parallel \
# Search text and binary files
yara \
# Minimalistic C client for Redis
libhiredis-dev \
# postgresql client
libpq-dev \
# mysql client (10MB)
libmysqlclient-dev \
# Print dir tree
tree \
# Bash autocompletion functionality
bash-completion \
# ping support
iputils-ping \
# Map remote ports to localhosM
socat \
# Json Processor
jq \
rsync \
# sqlite3 driver - required for pyenv
libsqlite3-dev \
# VCS:
git \
# odbc drivers
unixodbc unixodbc-dev \
# Image support
libtiff-dev \
libjpeg-dev \
libpng-dev \
libglib2.0-0 \
libxext6 \
libsm6 \
libxext-dev \
libxrender1 \
libzmq3-dev \
# protobuffer support
protobuf-compiler \
libprotobuf-dev \
libprotoc-dev \
autoconf \
automake \
libtool \
cmake \
fonts-liberation \
google-perftools \
# Compression Libs
# also install rar/unrar? but both are propriatory or unar (40MB)
zip \
gzip \
unzip \
bzip2 \
lzop \
# deprecates bsdtar (https://ubuntu.pkgs.org/20.04/ubuntu-universe-i386/libarchive-tools_3.4.0-2ubuntu1_i386.deb.html)
libarchive-tools \
# unpack (almost) everything with one command
unp \
libbz2-dev \
liblzma-dev \
zlib1g-dev && \
# Update git to newest version
add-apt-repository -y ppa:git-core/ppa && \
apt-get update && \
apt-get install -y --no-install-recommends git && \
# Fix all execution permissions
chmod -R a+rwx /usr/local/bin/ && \
# configure dynamic linker run-time bindings
ldconfig && \
# prepare ssh for inter-container communication for remote python kernel
apt-get install -y --no-install-recommends \
openssh-client \
openssh-server \
# SSLH for SSH + HTTP(s) Multiplexing
sslh \
# SSH Tooling
autossh \
mussh && \
chmod go-w $HOME && \
mkdir -p $HOME/.ssh/ && \
# create empty config file if not exists
touch $HOME/.ssh/config && \
sudo chown -R $NB_USER:users $HOME/.ssh && \
chmod 700 $HOME/.ssh && \
printenv >> $HOME/.ssh/environment && \
chmod -R a+rwx /usr/local/bin/ && \
# Fix permissions
fix-permissions.sh $HOME && \
# Cleanup
clean-layer.sh
# Add tini
RUN wget --no-verbose https://github.com/krallin/tini/releases/download/v0.19.0/tini -O /tini && \
chmod +x /tini
### END BASICS ###
### RUNTIMES ###
ENV PYTHONPATH=/usr/local/lib/python3.10
# Install pyenv to allow dynamic creation of python versions
RUN git clone https://github.com/pyenv/pyenv.git $RESOURCES_PATH/.pyenv && \
# Install pyenv plugins based on pyenv installer
git clone https://github.com/pyenv/pyenv-virtualenv.git $RESOURCES_PATH/.pyenv/plugins/pyenv-virtualenv && \
git clone git://github.com/pyenv/pyenv-doctor.git $RESOURCES_PATH/.pyenv/plugins/pyenv-doctor && \
git clone https://github.com/pyenv/pyenv-update.git $RESOURCES_PATH/.pyenv/plugins/pyenv-update && \
git clone https://github.com/pyenv/pyenv-which-ext.git $RESOURCES_PATH/.pyenv/plugins/pyenv-which-ext && \
apt-get update && \
# TODO: lib might contain high vulnerability
# Required by pyenv
apt-get install -y --no-install-recommends libffi-dev && \
clean-layer.sh
# Add pyenv to path
ENV PATH=$RESOURCES_PATH/.pyenv/shims:$RESOURCES_PATH/.pyenv/bin:$HOME/.local/bin:$PATH \
PYENV_ROOT=$RESOURCES_PATH/.pyenv
# Install pipx
RUN pip install pipx && \
# Configure pipx
/usr/bin/python -m pipx ensurepath && \
# Cleanup
clean-layer.sh
# Node.js is installed (v16.20.2) through NVM (in /usr/local/nvm/versions/node/v16.20.2)
RUN \
apt-get update && \
# symlink also to /usr/local/bin
ln -s /usr/local/nvm/versions/node/v16.20.2/bin/node /usr/local/bin/node && \
ln -s /usr/local/nvm/versions/node/v16.20.2/bin/npm /usr/local/bin/npm && \
# Fix permissions
chmod a+rwx /usr/local/nvm/versions/node/v16.20.2/bin/node && \
chmod a+rwx /usr/local/nvm/versions/node/v16.20.2/bin/npm && \
# Fix node versions - put into own dir and before conda:
mkdir -p /opt/node/bin && \
ln -s /usr/local/nvm/versions/node/v16.20.2/bin/node /opt/node/bin/node && \
ln -s /usr/local/nvm/versions/node/v16.20.2/bin/npm /opt/node/bin/npm && \
# Install Yarn
npm install -g yarn && \
# symlink also to /usr/local/bin
ln -s /usr/local/nvm/versions/node/v16.20.2/bin/yarn /usr/local/bin/yarn && \
yarn --version && \
# Install typescript
npm install -g typescript && \
# Install webpack - 32 MB
npm install -g webpack && \
# Install node-gyp
npm install -g node-gyp && \
# Cleanup
clean-layer.sh
ENV PATH=/opt/node/bin:$PATH
### END RUNTIMES ###
### PROCESS TOOLS ###
# Install supervisor for process supervision
RUN \
apt-get update && \
# Create sshd run directory - required for starting process via supervisor
mkdir -p /var/run/sshd && chmod 400 /var/run/sshd && \
# Install rsyslog for syslog logging
apt-get install -y --no-install-recommends rsyslog && \
# On Debian/Ubuntu systems, you need to install the python3-venv
apt-get install -y --no-install-recommends python3.10-venv && \
pipx install supervisor && \
pipx inject supervisor supervisor-stdout && \
# supervisor needs this logging path
mkdir -p /var/log/supervisor/ && \
# Cleanup
clean-layer.sh
### END PROCESS TOOLS ###
### GUI TOOLS ###
# Install xfce4 & gui tools
RUN \
# Use staging channel to get newest xfce4 version (4.18)
add-apt-repository -y ppa:xubuntu-dev/staging && \
apt-get update && \
apt-get install -y --no-install-recommends xfce4 && \
apt-get install -y --no-install-recommends gconf2 && \
apt-get install -y --no-install-recommends xfce4-terminal && \
apt-get install -y --no-install-recommends xfce4-clipman && \
apt-get install -y --no-install-recommends xterm && \
apt-get install -y --no-install-recommends --allow-unauthenticated xfce4-taskmanager && \
# Install dependencies to enable vncserver
apt-get install -y --no-install-recommends xauth xinit dbus-x11 && \
# Install gdebi deb installer
apt-get install -y --no-install-recommends gdebi && \
# Search for files
apt-get install -y --no-install-recommends catfish && \
apt-get install -y --no-install-recommends font-manager && \
# vs support for thunar
apt-get install -y thunar-vcs-plugin && \
# Disk Usage Visualizer
apt-get install -y --no-install-recommends baobab && \
apt-get install -y --no-install-recommends vim && \
# Process monitoring
apt-get install -y --no-install-recommends htop && \
# Install Archive/Compression Tools: https://wiki.ubuntuusers.de/Archivmanager/
apt-get install -y p7zip p7zip-rar && \
apt-get install -y --no-install-recommends thunar-archive-plugin && \
apt-get install -y xarchiver && \
# DB Utils
apt-get install -y --no-install-recommends sqlitebrowser && \
# Install nautilus and support for sftp mounting
apt-get install -y --no-install-recommends nautilus gvfs-backends && \
# Install gigolo - Access remote systems
apt-get install -y --no-install-recommends gigolo gvfs libglib2.0-bin && \
# Leightweight ftp client that supports sftp, http, ...
apt-get install -y --no-install-recommends gftp && \
# Install chrome
# sudo add-apt-repository ppa:system76/pop
add-apt-repository ppa:saiarcot895/chromium-beta && \
apt-get update && \
apt-get install -y chromium-browser chromium-browser-l10n chromium-codecs-ffmpeg && \
ln -s /usr/bin/chromium-browser /usr/bin/google-chrome && \
# Cleanup
apt-get purge -y pm-utils xscreensaver* && \
# Large package: gnome-user-guide 50MB app-install-data 50MB
apt-get remove -y app-install-data gnome-user-guide && \
# Install VNC
# required for websockify
# apt-get install -y python-numpy && \
cd ${RESOURCES_PATH} && \
# Tiger VNC
wget -qO- https://sourceforge.net/projects/tigervnc/files/stable/1.11.0/tigervnc-1.11.0.x86_64.tar.gz/download | tar xz --strip 1 -C / && \
# Install websockify
mkdir -p ./novnc/utils/websockify && \
# Before updating the noVNC version, we need to make sure that our monkey patching scripts still work!!
wget -qO- https://github.com/novnc/noVNC/archive/v1.2.0.tar.gz | tar xz --strip 1 -C ./novnc && \
wget -qO- https://github.com/novnc/websockify/archive/v0.9.0.tar.gz | tar xz --strip 1 -C ./novnc/utils/websockify && \
chmod +x -v ./novnc/utils/*.sh && \
# create user vnc directory
mkdir -p $HOME/.vnc && \
clean-layer.sh
# Add the defaults from /lib/x86_64-linux-gnu, otherwise lots of no version errors
# cannot be added above otherwise there are errors in the installation of the gui tools
# Call order: https://unix.stackexchange.com/questions/367600/what-is-the-order-that-linuxs-dynamic-linker-searches-paths-in
ENV LD_LIBRARY_PATH=/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:$LD_LIBRARY_PATH
# Copy files into workspace
COPY ml-workspace/resources/ $RESOURCES_PATH/
# Install Web Tools - Offered via Jupyter Tooling Plugin
## VS Code Server: https://github.com/codercom/code-server
RUN \
/bin/bash $RESOURCES_PATH/tools/vs-code-server.sh --install && \
/bin/bash $RESOURCES_PATH/tools/ungit.sh --install && \
/bin/bash $RESOURCES_PATH/tools/netdata.sh --install && \
/bin/bash $RESOURCES_PATH/tools/filebrowser.sh --install && \
/bin/bash $RESOURCES_PATH/tools/vs-code-desktop.sh --install && \
/bin/bash $RESOURCES_PATH/tools/firefox.sh --install && \
# Cleanup
clean-layer.sh
### END GUI TOOLS ###
### DATA SCIENCE BASICS ###
## Python 3
# Data science libraries requirements
### Install main data science libs
RUN \
apt-get update && \
# upgrade pip
pip install --upgrade pip && \
pip install --no-cache-dir --upgrade --upgrade-strategy only-if-needed scikit-learn==1.3.2 && \
# Install minimal pip requirements
pip install --no-cache-dir --upgrade --upgrade-strategy only-if-needed -r ${RESOURCES_PATH}/libraries/requirements-dimensionlab.txt && \
# Cleanup
clean-layer.sh
### END DATA SCIENCE BASICS ###
### JUPYTER ###
RUN \
cp -f $RESOURCES_PATH/jupyter/start.sh /usr/local/bin/ && \
cp -f $RESOURCES_PATH/jupyter/start-notebook.sh /usr/local/bin/ && \
cp -f $RESOURCES_PATH/jupyter/start-singleuser.sh /usr/local/bin/ && \
# Configure Jupyter / JupyterLab
# Add as jupyter system configuration
mkdir -p /etc/jupyter/nbconfig/ && \
cp -fr $RESOURCES_PATH/jupyter/nbconfig /etc/jupyter/nbconfig/ && \
cp -f $RESOURCES_PATH/jupyter/jupyter_notebook_config.json /etc/jupyter/ && \
# install jupyter extensions
# Create empty notebook configuration
mkdir -p $HOME/.jupyter/nbconfig/ && \
printf "{\"load_extensions\": {}}" > $HOME/.jupyter/nbconfig/notebook.json && \
# Activate and configure extensions
jupyter contrib nbextension install --sys-prefix && \
# nbextensions configurator
jupyter nbextensions_configurator enable --sys-prefix && \
# Configure nbdime
nbdime config-git --enable --global && \
# Activate Jupytext (KeyError: 'The Python module jupytext is not a valid nbextension, it is missing the `_jupyter_nbextension_paths()` method.')
# jupyter nbextension enable --py jupytext --sys-prefix && \
# Enable useful extensions
jupyter nbextension enable skip-traceback/main --sys-prefix && \
# jupyter nbextension enable comment-uncomment/main && \
jupyter nbextension enable toc2/main --sys-prefix && \
jupyter nbextension enable execute_time/ExecuteTime --sys-prefix && \
jupyter nbextension enable collapsible_headings/main --sys-prefix && \
jupyter nbextension enable codefolding/main --sys-prefix && \
# Disable pydeck extension, cannot be loaded (404)
jupyter nbextension disable pydeck/extension && \
# Install and activate Jupyter Tensorboard
pip install --no-cache-dir git+https://github.com/InfuseAI/jupyter_tensorboard.git && \
jupyter tensorboard enable --sys-prefix && \
# TODO moved to configuration files = ml-workspace/resources/jupyter/nbconfig Edit notebook config
# echo '{"nbext_hide_incompat": false}' > $HOME/.jupyter/nbconfig/common.json && \
cat $HOME/.jupyter/nbconfig/notebook.json | jq '.toc2={"moveMenuLeft": false,"widenNotebook": false,"skip_h1_title": false,"sideBar": true,"number_sections": false,"collapse_to_match_collapsible_headings": true}' > tmp.$$.json && mv tmp.$$.json $HOME/.jupyter/nbconfig/notebook.json && \
# TODO: Not installed. Disable Jupyter Server Proxy
# jupyter nbextension disable jupyter_server_proxy/tree --sys-prefix && \
# Install jupyter black
jupyter nbextension install https://github.com/drillan/jupyter-black/archive/master.zip --sys-prefix && \
jupyter nbextension enable jupyter-black-master/jupyter-black --sys-prefix && \
# Install and activate what if tool
pip install witwidget && \
jupyter nbextension install --py --symlink --sys-prefix witwidget && \
jupyter nbextension enable --py --sys-prefix witwidget && \
# Activate qgrid
jupyter nbextension enable --py --sys-prefix qgrid && \
# TODO: Activate Colab support
# jupyter serverextension enable --py jupyter_http_over_ws && \
# Activate Voila Rendering
# currently not working jupyter serverextension enable voila --sys-prefix && \
# Enable ipclusters
ipcluster nbextension enable && \
# install jupyterlab
# without es6-promise some extension builds fail
npm install -g es6-promise && \
# define alias command for jupyterlab extension installs with log prints to stdout
jupyter lab build && \
lab_ext_install='jupyter labextension install -y --debug-log-path=/dev/stdout --log-level=WARN --minimize=False --no-build' && \
# jupyterlab installed in requirements section
$lab_ext_install @jupyter-widgets/jupyterlab-manager && \
# install temporarily from gitrepo due to the issue that jupyterlab_tensorboard does not work with 3.x yet as described here: https://github.com/chaoleili/jupyterlab_tensorboard/issues/28#issuecomment-783594541
#$lab_ext_install jupyterlab_tensorboard && \
pip install git+https://github.com/chaoleili/jupyterlab_tensorboard.git && \
# install jupyterlab git
# $lab_ext_install @jupyterlab/git && \
pip install jupyterlab-git && \
# jupyter serverextension enable --py jupyterlab_git && \
# For Matplotlib: https://github.com/matplotlib/jupyter-matplotlib
#$lab_ext_install jupyter-matplotlib && \
# Install jupyterlab language server support
pip install jupyterlab-lsp==3.7.0 jupyter-lsp==1.3.0 && \
# $lab_ext_install install @krassowski/[email protected] && \
# For Plotly
$lab_ext_install jupyterlab-plotly && \
$lab_ext_install install @jupyter-widgets/jupyterlab-manager plotlywidget && \
# produces build error: jupyter labextension install jupyterlab-chart-editor && \
$lab_ext_install jupyterlab-chart-editor && \
# Install jupyterlab variable inspector - https://github.com/lckr/jupyterlab-variableInspector
pip install lckr-jupyterlab-variableinspector && \
# For holoview
# TODO: pyviz is not yet supported by the current JupyterLab version
# $lab_ext_install @pyviz/jupyterlab_pyviz && \
# Install Debugger in Jupyter Lab
# pip install --no-cache-dir xeus-python && \
# $lab_ext_install @jupyterlab/debugger && \
# Install jupyterlab code formattor - https://github.com/ryantam626/jupyterlab_code_formatter
$lab_ext_install @ryantam626/jupyterlab_code_formatter && \
pip install jupyterlab_code_formatter && \
# Problem (KeyError): 'The Python module jupyterlab_code_formatter does not include any valid server extensions'
# jupyter serverextension enable --py jupyterlab_code_formatter && \
# Final build with minimization
jupyter lab build -y --debug-log-path=/dev/stdout --log-level=WARN && \
jupyter lab build && \
# Cleanup
# Clean jupyter lab cache: https://github.com/jupyterlab/jupyterlab/issues/4930
jupyter lab clean && \
jlpm cache clean && \
# Cleanup
clean-layer.sh
# Install Jupyter Tooling Extension
RUN \
cp -fr $RESOURCES_PATH/jupyter/extensions $RESOURCES_PATH/jupyter-extensions && \
pip install --no-cache-dir $RESOURCES_PATH/jupyter-extensions/tooling-extension/ && \
# Cleanup
clean-layer.sh
# Install and activate ZSH
RUN \
apt-get update && \
apt-get install -y --no-install-recommends unzip zip && \
# Install ZSH
/bin/bash $RESOURCES_PATH/tools/oh-my-zsh.sh --install && \
# Make zsh the default shell
chsh -s $(which zsh) $NB_USER && \
# Install sdkman - needs to be executed after zsh
curl -s https://get.sdkman.io | bash && \
# Cleanup
clean-layer.sh
### VSCODE ###
# Install vscode extension
# https://github.com/cdr/code-server/issues/171
# Alternative install: /usr/local/bin/code-server --user-data-dir=$HOME/.config/Code/ --extensions-dir=$HOME/.vscode/extensions/ --install-extension ms-python-release && \
RUN \
SLEEP_TIMER=25 && \
cd $RESOURCES_PATH && \
mkdir -p $HOME/.vscode/extensions/ && \
# Install vs code jupyter - required by python extension
VS_JUPYTER_VERSION="2021.6.832593372" && \
wget --retry-on-http-error=429 --waitretry 15 --tries 5 --no-verbose https://marketplace.visualstudio.com/_apis/public/gallery/publishers/ms-toolsai/vsextensions/jupyter/$VS_JUPYTER_VERSION/vspackage -O ms-toolsai.jupyter-$VS_JUPYTER_VERSION.vsix && \
bsdtar -xf ms-toolsai.jupyter-$VS_JUPYTER_VERSION.vsix extension && \
rm ms-toolsai.jupyter-$VS_JUPYTER_VERSION.vsix && \
mv extension $HOME/.vscode/extensions/ms-toolsai.jupyter-$VS_JUPYTER_VERSION && \
sleep $SLEEP_TIMER && \
# Install python extension - (newer versions are 30MB bigger)
VS_PYTHON_VERSION="2021.5.926500501" && \
wget --no-verbose https://github.com/microsoft/vscode-python/releases/download/$VS_PYTHON_VERSION/ms-python-release.vsix && \
bsdtar -xf ms-python-release.vsix extension && \
rm ms-python-release.vsix && \
mv extension $HOME/.vscode/extensions/ms-python.python-$VS_PYTHON_VERSION && \
# && code-server --install-extension ms-python.python@$VS_PYTHON_VERSION \
sleep $SLEEP_TIMER && \
# Install prettier: https://github.com/prettier/prettier-vscode/releases
PRETTIER_VERSION="10.4.0" && \
wget --no-verbose https://github.com/prettier/prettier-vscode/releases/download/v$PRETTIER_VERSION/prettier-vscode-$PRETTIER_VERSION.vsix && \
bsdtar -xf prettier-vscode-$PRETTIER_VERSION.vsix extension && \
rm prettier-vscode-$PRETTIER_VERSION.vsix && \
mv extension $HOME/.vscode/extensions/prettier-vscode-$PRETTIER_VERSION.vsix && \
# Install code runner: https://github.com/formulahendry/vscode-code-runner/releases/latest
VS_CODE_RUNNER_VERSION="0.9.17" && \
wget --no-verbose https://github.com/formulahendry/vscode-code-runner/releases/download/$VS_CODE_RUNNER_VERSION/code-runner-$VS_CODE_RUNNER_VERSION.vsix && \
bsdtar -xf code-runner-$VS_CODE_RUNNER_VERSION.vsix extension && \
rm code-runner-$VS_CODE_RUNNER_VERSION.vsix && \
mv extension $HOME/.vscode/extensions/code-runner-$VS_CODE_RUNNER_VERSION && \
# && code-server --install-extension formulahendry.code-runner@$VS_CODE_RUNNER_VERSION \
sleep $SLEEP_TIMER && \
# Install ESLint extension: https://marketplace.visualstudio.com/items?itemName=dbaeumer.vscode-eslint
VS_ESLINT_VERSION="2.4.4" && \
wget --retry-on-http-error=429 --waitretry 15 --tries 5 --no-verbose https://marketplace.visualstudio.com/_apis/public/gallery/publishers/dbaeumer/vsextensions/vscode-eslint/$VS_ESLINT_VERSION/vspackage -O dbaeumer.vscode-eslint.vsix && \
# && wget --no-verbose https://github.com/microsoft/vscode-eslint/releases/download/$VS_ESLINT_VERSION-insider.2/vscode-eslint-$VS_ESLINT_VERSION.vsix -O dbaeumer.vscode-eslint.vsix && \
bsdtar -xf dbaeumer.vscode-eslint.vsix extension && \
rm dbaeumer.vscode-eslint.vsix && \
mv extension $HOME/.vscode/extensions/dbaeumer.vscode-eslint-$VS_ESLINT_VERSION.vsix && \
# && code-server --install-extension dbaeumer.vscode-eslint@$VS_ESLINT_VERSION \
# Fix permissions
fix-permissions.sh $HOME/.vscode/extensions/ && \
# Cleanup
clean-layer.sh
### END VSCODE ###
### CONFIGURATION ###
# Various configurations
RUN \
# Configure Home folder (e.g. xfce)
cp -fr $RESOURCES_PATH/home/ $HOME/ && \
# Copy some configuration files
cp -f $RESOURCES_PATH/ssh/ssh_config /etc/ssh/ && \
cp -f $RESOURCES_PATH/ssh/sshd_config /etc/ssh/ && \
# We don't install nginx in this container, so skipping this
# cp -f $RESOURCES_PATH/nginx/nginx.conf /etc/nginx/nginx.conf && \
# xrdp is removed
# cp -f $RESOURCES_PATH/config/xrdp.ini /etc/xrdp/xrdp.ini && \
# Configure supervisor process
mkdir -p /etc/supervisor && \
cp -f $RESOURCES_PATH/supervisor/supervisord.conf /etc/supervisor/supervisord.conf && \
# Copy all supervisor program definitions into workspace
cp -fr $RESOURCES_PATH/supervisor/programs/ /etc/supervisor/conf.d/ && \
# Assume yes to all apt commands, to avoid user confusion around stdin.
cp -fr $RESOURCES_PATH/config/90assumeyes /etc/apt/apt.conf.d/ && \
# Add tensorboard patch - use tensorboard jupyter plugin instead of the actual tensorboard magic
cp -f $RESOURCES_PATH/jupyter/tensorboard_notebook_patch.py $PYTHONPATH/dist-packages/tensorboard/notebook.py && \
# Additional jupyter configuration
cp -f $RESOURCES_PATH/jupyter/jupyter_notebook_config.py /etc/jupyter/ && \
mkdir -p $HOME/.jupyter/lab/user-settings/@jupyterlab/application-extension/ && \
cp -f $RESOURCES_PATH/jupyter/sidebar.jupyterlab-settings $HOME/.jupyter/lab/user-settings/@jupyterlab/application-extension/ && \
mkdir -p $HOME/.jupyter/lab/user-settings/@jupyterlab/extensionmanager-extension/ && \
cp -f $RESOURCES_PATH/jupyter/plugin.jupyterlab-settings $HOME/.jupyter/lab/user-settings/@jupyterlab/extensionmanager-extension/ && \
mkdir -p /etc/ipython/ && \
cp -f $RESOURCES_PATH/jupyter/ipython_config.py /etc/ipython/ipython_config.py && \
# Configure netdata
mkdir -p /etc/netdata/ && \
cp -fr $RESOURCES_PATH/netdata/ /etc/netdata/ && \
cp -f $RESOURCES_PATH/netdata/cloud.conf /var/lib/netdata/cloud.d/cloud.conf && \
# Jupyter Branding
cp -f $RESOURCES_PATH/branding/logo.png $PYTHONPATH"/dist-packages/notebook/static/base/images/logo.png" && \
cp -f $RESOURCES_PATH/branding/favicon.ico $PYTHONPATH"/dist-packages/notebook/static/base/images/favicon.ico" && \
cp -f $RESOURCES_PATH/branding/favicon.ico $PYTHONPATH"/dist-packages/notebook/static/favicon.ico" && \
# Fielbrowser Branding
mkdir -p $RESOURCES_PATH"/filebrowser/img/icons/" && \
cp -f $RESOURCES_PATH/branding/favicon.ico $RESOURCES_PATH"/filebrowser/img/icons/favicon.ico" && \
cp -f $RESOURCES_PATH/branding/favicon.ico $RESOURCES_PATH"/filebrowser/img/icons/favicon-32x32.png" && \
cp -f $RESOURCES_PATH/branding/favicon.ico $RESOURCES_PATH"/filebrowser/img/icons/favicon-16x16.png" && \
cp -f $RESOURCES_PATH/branding/ml-workspace-logo.svg $RESOURCES_PATH"/filebrowser/img/logo.svg" && \
# Configure git
git config --global core.fileMode false && \
git config --global http.sslVerify false && \
# Use store or credentialstore instead? timout == 365 days validity
git config --global credential.helper 'cache --timeout=31540000' && \
# Import matplotlib the first time to build the font cache.
MPLBACKEND=Agg /usr/bin/python -c "import matplotlib.pyplot" && \
# Stop Matplotlib printing junk to the console on first load
sed -i "s/^.*Matplotlib is building the font cache using fc-list.*$/# Warning removed/g" $PYTHONPATH/dist-packages/matplotlib/font_manager.py && \
# ungit:
echo "[Desktop Entry]\nVersion=1.0\nType=Link\nName=Ungit\nComment=Git Client\nCategories=Development;\nIcon=/resources/icons/ungit-icon.png\nURL=http://localhost:8092/tools/ungit" > /usr/share/applications/ungit.desktop && \
chmod +x /usr/share/applications/ungit.desktop && \
# netdata:
echo "[Desktop Entry]\nVersion=1.0\nType=Link\nName=Netdata\nComment=Hardware Monitoring\nCategories=System;Utility;Development;\nIcon=/resources/icons/netdata-icon.png\nURL=http://localhost:8092/tools/netdata" > /usr/share/applications/netdata.desktop && \
chmod +x /usr/share/applications/netdata.desktop && \
# glances:
echo "[Desktop Entry]\nVersion=1.0\nType=Link\nName=Glances\nComment=Hardware Monitoring\nCategories=System;Utility;\nIcon=/resources/icons/glances-icon.png\nURL=http://localhost:8092/tools/glances" > /usr/share/applications/glances.desktop && \
chmod +x /usr/share/applications/glances.desktop && \
# Remove mail and logout desktop icons
rm /usr/share/applications/xfce4-mail-reader.desktop && \
rm /usr/share/applications/xfce4-session-logout.desktop && \
## create index.html to forward automatically to `vnc.html`
# Needs to be run after patching
ln -s $RESOURCES_PATH/novnc/vnc.html $RESOURCES_PATH/novnc/index.html && \
# clear chome init file - not needed since we load settings manually
chmod -R a+rwx $WORKSPACE_HOME && \
chmod -R a+rwx $RESOURCES_PATH && \
# make all desktop launchers executable
chmod -R a+rwx /usr/share/applications/ && \
ls $HOME/Desktop && \
ln -s $RESOURCES_PATH/tools/ $HOME/Desktop/Tools && \
ln -s $WORKSPACE_HOME $HOME/Desktop/workspace && \
chmod a+rwx /usr/local/bin/start-notebook.sh && \
chmod a+rwx /usr/local/bin/start.sh && \
chmod a+rwx /usr/local/bin/start-singleuser.sh && \
chown root:root /tmp && \
chmod 1777 /tmp && \
# TODO: does 1777 work fine? chmod a+rwx /tmp && \
# Set /workspace as default directory to navigate to as root user
echo 'cd '$WORKSPACE_HOME >> $HOME/.bashrc
# MKL and Hardware Optimization
# Fix problem with MKL with duplicated libiomp5: https://github.com/dmlc/xgboost/issues/1715
# Alternative - use openblas instead of Intel MKL: conda install -y nomkl
# http://markus-beuckelmann.de/blog/boosting-numpy-blas.html
# MKL:
# https://software.intel.com/en-us/articles/tips-to-improve-performance-for-popular-deep-learning-frameworks-on-multi-core-cpus
# https://github.com/intel/pytorch#bkm-on-xeon
# http://astroa.physics.metu.edu.tr/MANUALS/intel_ifc/mergedProjects/optaps_for/common/optaps_par_var.htm
# https://www.tensorflow.org/guide/performance/overview#tuning_mkl_for_the_best_performance
# https://software.intel.com/en-us/articles/maximize-tensorflow-performance-on-cpu-considerations-and-recommendations-for-inference
ENV KMP_DUPLICATE_LIB_OK="True" \
# Control how to bind OpenMP* threads to physical processing units # verbose
KMP_AFFINITY="granularity=fine,compact,1,0" \
KMP_BLOCKTIME=0 \
# KMP_BLOCKTIME="1" -> is not faster in my tests
# TensorFlow uses less than half the RAM with tcmalloc relative to the default. - requires google-perftools
# Too many issues: LD_PRELOAD="/usr/lib/libtcmalloc.so.4" \
# TODO set PYTHONDONTWRITEBYTECODE
# TODO set XDG_CONFIG_HOME, CLICOLOR?
# https://software.intel.com/en-us/articles/getting-started-with-intel-optimization-for-mxnet
# KMP_AFFINITY=granularity=fine, noduplicates,compact,1,0
# MXNET_SUBGRAPH_BACKEND=MKLDNN
# TODO: check https://github.com/oneapi-src/oneTBB/issues/190
# TODO: https://github.com/pytorch/pytorch/issues/37377
# use omp
MKL_THREADING_LAYER=GNU \
# Basic VNC Settings - no password
VNC_PW=vncpassword \
VNC_RESOLUTION=1600x900 \
VNC_COL_DEPTH=24 \
# To avoid over-subscription when using TBB, let the TBB schedulers use Inter Process Communication to coordinate:
ENABLE_IPC=1 \
# will cause pretty_errors to check if it is running in an interactive terminal
PYTHON_PRETTY_ERRORS_ISATTY_ONLY=1 \
# TODO: evaluate - Deactivate hdf5 file locking
HDF5_USE_FILE_LOCKING=False \
# Set default values for environment variables
CONFIG_BACKUP_ENABLED="true" \
SHUTDOWN_INACTIVE_KERNELS="false" \
SHARED_LINKS_ENABLED="true" \
AUTHENTICATE_VIA_JUPYTER="false" \
DATA_ENVIRONMENT=$WORKSPACE_HOME"/environment" \
WORKSPACE_BASE_URL="/" \
INCLUDE_TUTORIALS="false" \
# Main port used for sshl proxy -> can be changed
WORKSPACE_PORT="8080" \
# Set zsh as default shell (e.g. in jupyter)
SHELL="/usr/bin/zsh" \
# Fix dark blue color for ls command (unreadable):
# https://askubuntu.com/questions/466198/how-do-i-change-the-color-for-directories-with-ls-in-the-console
# USE default LS_COLORS - Dont set LS COLORS - overwritten in zshrc
# LS_COLORS="" \
# set number of threads various programs should use, if not-set, it tries to use all
# this can be problematic since docker restricts CPUs by stil showing all
MAX_NUM_THREADS="auto" \
# By default, the majority of GPU memory will be allocated by the first
# execution of a TensorFlow graph. While this behavior can be desirable for
# production pipelines, it is less desirable for interactive use. Set
# TF_FORCE_GPU_ALLOW_GROWTH to change this default behavior as if the user had
TF_FORCE_GPU_ALLOW_GROWTH="true"
### END CONFIGURATION ###
# use global option with tini to kill full process groups: https://github.com/krallin/tini#process-group-killing
ENTRYPOINT ["/tini", "-g", "--"]
CMD ["python", "/resources/docker-entrypoint.py"]
# Port 8080 is the main access port (also includes SSH)
# Port 5091 is the VNC port
# Port 3389 is the RDP port
# Port 8090 is the Jupyter Notebook Server
# See supervisor.conf for more ports
EXPOSE 8080
###