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Permanent fix for duplication of merged SNPs on import #1451

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ljwh2 opened this issue Oct 2, 2024 · 1 comment
Open

Permanent fix for duplication of merged SNPs on import #1451

ljwh2 opened this issue Oct 2, 2024 · 1 comment

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@ljwh2
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ljwh2 commented Oct 2, 2024

Duplicate SNPs cause the data release to break and issues in data presentation, please refer to #1275 for more details. Ala cleaned up all the existing examples in the database but code changes are required to stop it happening in future.

Acceptance criteria for this issue:

  • Curators can extract merged SNPs using the merged rsID
  • unpublished SNPs do not break the DR
  • published SNPs appear only once in the UI & download
@ljwh2
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ljwh2 commented Oct 2, 2024

On further analysis, this may be a problem on Ensembl side, as none of the duplicated SNPs are found in Ensembl (though they are found in dbSNP). This issue needs a bioinformatician to look at it.

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