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Old harmonised data missing yaml files #1457

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jiyue1214 opened this issue Oct 9, 2024 · 2 comments
Open

Old harmonised data missing yaml files #1457

jiyue1214 opened this issue Oct 9, 2024 · 2 comments
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@jiyue1214
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There are some old studies in the format:
GCST123456

  • *******.gz
  • harmonised
    - GCST123456.f.tsv.gz
    - GCST123456.h.tsv.gz
    But missing the yaml file for harmonised data

Solutions: if the raw data did not start with the GCST, keep them as they are, generating a yaml file for the harmonised data.

@jiyue1214 jiyue1214 self-assigned this Oct 9, 2024
@jiyue1214
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There are 543 studies in the same situation: /nfs/production/keane/amp/AMP_harmonization/harmonization/test/no_yaml/check_files.txt

@jiyue1214
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@earlEBI reported these studies are missing yaml ftsv_empty-yamls-28.10.24.txt.

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