Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Studies missing file_type in yaml file #1479

Open
jiyue1214 opened this issue Oct 30, 2024 · 2 comments
Open

Studies missing file_type in yaml file #1479

jiyue1214 opened this issue Oct 30, 2024 · 2 comments
Assignees

Comments

@jiyue1214
Copy link

@earlEBI found studies which missing the file_type in the yaml file.

Class 1: there are two yaml files for each study, one with file_type and the other not. @karatugo, could you check if there file_type is available in the mangodb? I listed the files_type in another yaml file.

GCST90012642 pre-GWAS-SSF
GCST90012674 pre-GWAS-SSF
GCST90012783 pre-GWAS-SSF
GCST90012739 pre-GWAS-SSF

if they are in the mango, I can delete the other yaml.

Class 2: missing file types
@jiyue1214 need to extract headers and evaluate the file_typeother_empty-yamls-28.10.24.txt

@jiyue1214
Copy link
Author

Originally from the ticket (Empty yaml file types and incorrect formatting)[https://github.com//issues/1424]

@karatugo
Copy link
Member

karatugo commented Nov 5, 2024

@earlEBI found studies which missing the file_type in the yaml file.

Class 1: there are two yaml files for each study, one with file_type and the other not. @karatugo, could you check if there file_type is available in the mangodb? I listed the files_type in another yaml file.

GCST90012642 pre-GWAS-SSF GCST90012674 pre-GWAS-SSF GCST90012783 pre-GWAS-SSF GCST90012739 pre-GWAS-SSF

if they are in the mango, I can delete the other yaml.

All missing from mongodb.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants