forked from sw1/teaching
-
Notifications
You must be signed in to change notification settings - Fork 0
/
bioinformatics.log
1652 lines (1517 loc) · 74.1 KB
/
bioinformatics.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian) (preloaded format=pdflatex 2017.2.16) 24 FEB 2020 15:55
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**bioinformatics.tex
(./bioinformatics.tex
LaTeX2e <2016/03/31>
Babel <3.9r> and hyphenation patterns for 3 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo
File: size10.clo 2014/09/29 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
) (/usr/share/texmf/tex/latex/lm/lmodern.sty
Package: lmodern 2009/10/30 v1.6 Latin Modern Fonts
LaTeX Font Info: Overwriting symbol font `operators' in version `normal'
(Font) OT1/cmr/m/n --> OT1/lmr/m/n on input line 22.
LaTeX Font Info: Overwriting symbol font `letters' in version `normal'
(Font) OML/cmm/m/it --> OML/lmm/m/it on input line 23.
LaTeX Font Info: Overwriting symbol font `symbols' in version `normal'
(Font) OMS/cmsy/m/n --> OMS/lmsy/m/n on input line 24.
LaTeX Font Info: Overwriting symbol font `largesymbols' in version `normal'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 25.
LaTeX Font Info: Overwriting symbol font `operators' in version `bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 26.
LaTeX Font Info: Overwriting symbol font `letters' in version `bold'
(Font) OML/cmm/b/it --> OML/lmm/b/it on input line 27.
LaTeX Font Info: Overwriting symbol font `symbols' in version `bold'
(Font) OMS/cmsy/b/n --> OMS/lmsy/b/n on input line 28.
LaTeX Font Info: Overwriting symbol font `largesymbols' in version `bold'
(Font) OMX/cmex/m/n --> OMX/lmex/m/n on input line 29.
LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `normal'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 31.
LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `normal'
(Font) OT1/cmss/m/n --> OT1/lmss/m/n on input line 32.
LaTeX Font Info: Overwriting math alphabet `\mathit' in version `normal'
(Font) OT1/cmr/m/it --> OT1/lmr/m/it on input line 33.
LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `normal'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 34.
LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `bold'
(Font) OT1/cmr/bx/n --> OT1/lmr/bx/n on input line 35.
LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `bold'
(Font) OT1/cmss/bx/n --> OT1/lmss/bx/n on input line 36.
LaTeX Font Info: Overwriting math alphabet `\mathit' in version `bold'
(Font) OT1/cmr/bx/it --> OT1/lmr/bx/it on input line 37.
LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `bold'
(Font) OT1/cmtt/m/n --> OT1/lmtt/m/n on input line 38.
) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
Package: amssymb 2013/01/14 v3.01 AMS font symbols
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
\@emptytoks=\toks14
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2016/03/10 v2.15b AMS math features
\@mathmargin=\skip43
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01 AMS text
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0 generic functions
\@emptytoks=\toks15
\ex@=\dimen103
)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d Bold Symbols
\pmbraise@=\dimen104
) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
Package: amsopn 2016/03/08 v2.02 operator names
)
\inf@bad=\count87
LaTeX Info: Redefining \frac on input line 199.
\uproot@=\count88
\leftroot@=\count89
LaTeX Info: Redefining \overline on input line 297.
\classnum@=\count90
\DOTSCASE@=\count91
LaTeX Info: Redefining \ldots on input line 394.
LaTeX Info: Redefining \dots on input line 397.
LaTeX Info: Redefining \cdots on input line 518.
\Mathstrutbox@=\box26
\strutbox@=\box27
\big@size=\dimen105
LaTeX Font Info: Redeclaring font encoding OML on input line 634.
LaTeX Font Info: Redeclaring font encoding OMS on input line 635.
\macc@depth=\count92
\c@MaxMatrixCols=\count93
\dotsspace@=\muskip10
\c@parentequation=\count94
\dspbrk@lvl=\count95
\tag@help=\toks16
\row@=\count96
\column@=\count97
\maxfields@=\count98
\andhelp@=\toks17
\eqnshift@=\dimen106
\alignsep@=\dimen107
\tagshift@=\dimen108
\tagwidth@=\dimen109
\totwidth@=\dimen110
\lineht@=\dimen111
\@envbody=\toks18
\multlinegap=\skip44
\multlinetaggap=\skip45
\mathdisplay@stack=\toks19
LaTeX Info: Redefining \[ on input line 2739.
LaTeX Info: Redefining \] on input line 2740.
) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty
Package: ifluatex 2016/05/16 v1.4 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty
Package: fixltx2e 2015/06/22 v2.0b fixes to LaTeX (obsolete)
Package fixltx2e Warning: fixltx2e is not required with releases after 2015
(fixltx2e) All fixes are now in the LaTeX kernel.
(fixltx2e) See the latexrelease package for details.
) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info: Redeclaring font encoding T1 on input line 48.
)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
Package: inputenc 2015/03/17 v1.2c Input encoding file
\inpenc@prehook=\toks20
\inpenc@posthook=\toks21
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
File: utf8.def 2016/02/28 v1.1s UTF-8 support for inputenc
Now handling font encoding OML ...
... no UTF-8 mapping file for font encoding OML
Now handling font encoding T1 ...
... processing UTF-8 mapping file for font encoding T1
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu
File: t1enc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
defining Unicode char U+00A0 (decimal 160)
defining Unicode char U+00A1 (decimal 161)
defining Unicode char U+00A3 (decimal 163)
defining Unicode char U+00AB (decimal 171)
defining Unicode char U+00AD (decimal 173)
defining Unicode char U+00BB (decimal 187)
defining Unicode char U+00BF (decimal 191)
defining Unicode char U+00C0 (decimal 192)
defining Unicode char U+00C1 (decimal 193)
defining Unicode char U+00C2 (decimal 194)
defining Unicode char U+00C3 (decimal 195)
defining Unicode char U+00C4 (decimal 196)
defining Unicode char U+00C5 (decimal 197)
defining Unicode char U+00C6 (decimal 198)
defining Unicode char U+00C7 (decimal 199)
defining Unicode char U+00C8 (decimal 200)
defining Unicode char U+00C9 (decimal 201)
defining Unicode char U+00CA (decimal 202)
defining Unicode char U+00CB (decimal 203)
defining Unicode char U+00CC (decimal 204)
defining Unicode char U+00CD (decimal 205)
defining Unicode char U+00CE (decimal 206)
defining Unicode char U+00CF (decimal 207)
defining Unicode char U+00D0 (decimal 208)
defining Unicode char U+00D1 (decimal 209)
defining Unicode char U+00D2 (decimal 210)
defining Unicode char U+00D3 (decimal 211)
defining Unicode char U+00D4 (decimal 212)
defining Unicode char U+00D5 (decimal 213)
defining Unicode char U+00D6 (decimal 214)
defining Unicode char U+00D8 (decimal 216)
defining Unicode char U+00D9 (decimal 217)
defining Unicode char U+00DA (decimal 218)
defining Unicode char U+00DB (decimal 219)
defining Unicode char U+00DC (decimal 220)
defining Unicode char U+00DD (decimal 221)
defining Unicode char U+00DE (decimal 222)
defining Unicode char U+00DF (decimal 223)
defining Unicode char U+00E0 (decimal 224)
defining Unicode char U+00E1 (decimal 225)
defining Unicode char U+00E2 (decimal 226)
defining Unicode char U+00E3 (decimal 227)
defining Unicode char U+00E4 (decimal 228)
defining Unicode char U+00E5 (decimal 229)
defining Unicode char U+00E6 (decimal 230)
defining Unicode char U+00E7 (decimal 231)
defining Unicode char U+00E8 (decimal 232)
defining Unicode char U+00E9 (decimal 233)
defining Unicode char U+00EA (decimal 234)
defining Unicode char U+00EB (decimal 235)
defining Unicode char U+00EC (decimal 236)
defining Unicode char U+00ED (decimal 237)
defining Unicode char U+00EE (decimal 238)
defining Unicode char U+00EF (decimal 239)
defining Unicode char U+00F0 (decimal 240)
defining Unicode char U+00F1 (decimal 241)
defining Unicode char U+00F2 (decimal 242)
defining Unicode char U+00F3 (decimal 243)
defining Unicode char U+00F4 (decimal 244)
defining Unicode char U+00F5 (decimal 245)
defining Unicode char U+00F6 (decimal 246)
defining Unicode char U+00F8 (decimal 248)
defining Unicode char U+00F9 (decimal 249)
defining Unicode char U+00FA (decimal 250)
defining Unicode char U+00FB (decimal 251)
defining Unicode char U+00FC (decimal 252)
defining Unicode char U+00FD (decimal 253)
defining Unicode char U+00FE (decimal 254)
defining Unicode char U+00FF (decimal 255)
defining Unicode char U+0100 (decimal 256)
defining Unicode char U+0101 (decimal 257)
defining Unicode char U+0102 (decimal 258)
defining Unicode char U+0103 (decimal 259)
defining Unicode char U+0104 (decimal 260)
defining Unicode char U+0105 (decimal 261)
defining Unicode char U+0106 (decimal 262)
defining Unicode char U+0107 (decimal 263)
defining Unicode char U+0108 (decimal 264)
defining Unicode char U+0109 (decimal 265)
defining Unicode char U+010A (decimal 266)
defining Unicode char U+010B (decimal 267)
defining Unicode char U+010C (decimal 268)
defining Unicode char U+010D (decimal 269)
defining Unicode char U+010E (decimal 270)
defining Unicode char U+010F (decimal 271)
defining Unicode char U+0110 (decimal 272)
defining Unicode char U+0111 (decimal 273)
defining Unicode char U+0112 (decimal 274)
defining Unicode char U+0113 (decimal 275)
defining Unicode char U+0114 (decimal 276)
defining Unicode char U+0115 (decimal 277)
defining Unicode char U+0116 (decimal 278)
defining Unicode char U+0117 (decimal 279)
defining Unicode char U+0118 (decimal 280)
defining Unicode char U+0119 (decimal 281)
defining Unicode char U+011A (decimal 282)
defining Unicode char U+011B (decimal 283)
defining Unicode char U+011C (decimal 284)
defining Unicode char U+011D (decimal 285)
defining Unicode char U+011E (decimal 286)
defining Unicode char U+011F (decimal 287)
defining Unicode char U+0120 (decimal 288)
defining Unicode char U+0121 (decimal 289)
defining Unicode char U+0122 (decimal 290)
defining Unicode char U+0123 (decimal 291)
defining Unicode char U+0124 (decimal 292)
defining Unicode char U+0125 (decimal 293)
defining Unicode char U+0128 (decimal 296)
defining Unicode char U+0129 (decimal 297)
defining Unicode char U+012A (decimal 298)
defining Unicode char U+012B (decimal 299)
defining Unicode char U+012C (decimal 300)
defining Unicode char U+012D (decimal 301)
defining Unicode char U+012E (decimal 302)
defining Unicode char U+012F (decimal 303)
defining Unicode char U+0130 (decimal 304)
defining Unicode char U+0131 (decimal 305)
defining Unicode char U+0132 (decimal 306)
defining Unicode char U+0133 (decimal 307)
defining Unicode char U+0134 (decimal 308)
defining Unicode char U+0135 (decimal 309)
defining Unicode char U+0136 (decimal 310)
defining Unicode char U+0137 (decimal 311)
defining Unicode char U+0139 (decimal 313)
defining Unicode char U+013A (decimal 314)
defining Unicode char U+013B (decimal 315)
defining Unicode char U+013C (decimal 316)
defining Unicode char U+013D (decimal 317)
defining Unicode char U+013E (decimal 318)
defining Unicode char U+0141 (decimal 321)
defining Unicode char U+0142 (decimal 322)
defining Unicode char U+0143 (decimal 323)
defining Unicode char U+0144 (decimal 324)
defining Unicode char U+0145 (decimal 325)
defining Unicode char U+0146 (decimal 326)
defining Unicode char U+0147 (decimal 327)
defining Unicode char U+0148 (decimal 328)
defining Unicode char U+014A (decimal 330)
defining Unicode char U+014B (decimal 331)
defining Unicode char U+014C (decimal 332)
defining Unicode char U+014D (decimal 333)
defining Unicode char U+014E (decimal 334)
defining Unicode char U+014F (decimal 335)
defining Unicode char U+0150 (decimal 336)
defining Unicode char U+0151 (decimal 337)
defining Unicode char U+0152 (decimal 338)
defining Unicode char U+0153 (decimal 339)
defining Unicode char U+0154 (decimal 340)
defining Unicode char U+0155 (decimal 341)
defining Unicode char U+0156 (decimal 342)
defining Unicode char U+0157 (decimal 343)
defining Unicode char U+0158 (decimal 344)
defining Unicode char U+0159 (decimal 345)
defining Unicode char U+015A (decimal 346)
defining Unicode char U+015B (decimal 347)
defining Unicode char U+015C (decimal 348)
defining Unicode char U+015D (decimal 349)
defining Unicode char U+015E (decimal 350)
defining Unicode char U+015F (decimal 351)
defining Unicode char U+0160 (decimal 352)
defining Unicode char U+0161 (decimal 353)
defining Unicode char U+0162 (decimal 354)
defining Unicode char U+0163 (decimal 355)
defining Unicode char U+0164 (decimal 356)
defining Unicode char U+0165 (decimal 357)
defining Unicode char U+0168 (decimal 360)
defining Unicode char U+0169 (decimal 361)
defining Unicode char U+016A (decimal 362)
defining Unicode char U+016B (decimal 363)
defining Unicode char U+016C (decimal 364)
defining Unicode char U+016D (decimal 365)
defining Unicode char U+016E (decimal 366)
defining Unicode char U+016F (decimal 367)
defining Unicode char U+0170 (decimal 368)
defining Unicode char U+0171 (decimal 369)
defining Unicode char U+0172 (decimal 370)
defining Unicode char U+0173 (decimal 371)
defining Unicode char U+0174 (decimal 372)
defining Unicode char U+0175 (decimal 373)
defining Unicode char U+0176 (decimal 374)
defining Unicode char U+0177 (decimal 375)
defining Unicode char U+0178 (decimal 376)
defining Unicode char U+0179 (decimal 377)
defining Unicode char U+017A (decimal 378)
defining Unicode char U+017B (decimal 379)
defining Unicode char U+017C (decimal 380)
defining Unicode char U+017D (decimal 381)
defining Unicode char U+017E (decimal 382)
defining Unicode char U+01CD (decimal 461)
defining Unicode char U+01CE (decimal 462)
defining Unicode char U+01CF (decimal 463)
defining Unicode char U+01D0 (decimal 464)
defining Unicode char U+01D1 (decimal 465)
defining Unicode char U+01D2 (decimal 466)
defining Unicode char U+01D3 (decimal 467)
defining Unicode char U+01D4 (decimal 468)
defining Unicode char U+01E2 (decimal 482)
defining Unicode char U+01E3 (decimal 483)
defining Unicode char U+01E6 (decimal 486)
defining Unicode char U+01E7 (decimal 487)
defining Unicode char U+01E8 (decimal 488)
defining Unicode char U+01E9 (decimal 489)
defining Unicode char U+01EA (decimal 490)
defining Unicode char U+01EB (decimal 491)
defining Unicode char U+01F0 (decimal 496)
defining Unicode char U+01F4 (decimal 500)
defining Unicode char U+01F5 (decimal 501)
defining Unicode char U+0218 (decimal 536)
defining Unicode char U+0219 (decimal 537)
defining Unicode char U+021A (decimal 538)
defining Unicode char U+021B (decimal 539)
defining Unicode char U+1E02 (decimal 7682)
defining Unicode char U+1E03 (decimal 7683)
defining Unicode char U+200C (decimal 8204)
defining Unicode char U+2010 (decimal 8208)
defining Unicode char U+2011 (decimal 8209)
defining Unicode char U+2012 (decimal 8210)
defining Unicode char U+2013 (decimal 8211)
defining Unicode char U+2014 (decimal 8212)
defining Unicode char U+2015 (decimal 8213)
defining Unicode char U+2018 (decimal 8216)
defining Unicode char U+2019 (decimal 8217)
defining Unicode char U+201A (decimal 8218)
defining Unicode char U+201C (decimal 8220)
defining Unicode char U+201D (decimal 8221)
defining Unicode char U+201E (decimal 8222)
defining Unicode char U+2030 (decimal 8240)
defining Unicode char U+2031 (decimal 8241)
defining Unicode char U+2039 (decimal 8249)
defining Unicode char U+203A (decimal 8250)
defining Unicode char U+2423 (decimal 9251)
)
Now handling font encoding OT1 ...
... processing UTF-8 mapping file for font encoding OT1
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu
File: ot1enc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
defining Unicode char U+00A0 (decimal 160)
defining Unicode char U+00A1 (decimal 161)
defining Unicode char U+00A3 (decimal 163)
defining Unicode char U+00AD (decimal 173)
defining Unicode char U+00B8 (decimal 184)
defining Unicode char U+00BF (decimal 191)
defining Unicode char U+00C5 (decimal 197)
defining Unicode char U+00C6 (decimal 198)
defining Unicode char U+00D8 (decimal 216)
defining Unicode char U+00DF (decimal 223)
defining Unicode char U+00E6 (decimal 230)
defining Unicode char U+00EC (decimal 236)
defining Unicode char U+00ED (decimal 237)
defining Unicode char U+00EE (decimal 238)
defining Unicode char U+00EF (decimal 239)
defining Unicode char U+00F8 (decimal 248)
defining Unicode char U+0131 (decimal 305)
defining Unicode char U+0141 (decimal 321)
defining Unicode char U+0142 (decimal 322)
defining Unicode char U+0152 (decimal 338)
defining Unicode char U+0153 (decimal 339)
defining Unicode char U+0174 (decimal 372)
defining Unicode char U+0175 (decimal 373)
defining Unicode char U+0176 (decimal 374)
defining Unicode char U+0177 (decimal 375)
defining Unicode char U+0218 (decimal 536)
defining Unicode char U+0219 (decimal 537)
defining Unicode char U+021A (decimal 538)
defining Unicode char U+021B (decimal 539)
defining Unicode char U+2013 (decimal 8211)
defining Unicode char U+2014 (decimal 8212)
defining Unicode char U+2018 (decimal 8216)
defining Unicode char U+2019 (decimal 8217)
defining Unicode char U+201C (decimal 8220)
defining Unicode char U+201D (decimal 8221)
)
Now handling font encoding OMS ...
... processing UTF-8 mapping file for font encoding OMS
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu
File: omsenc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
defining Unicode char U+00A7 (decimal 167)
defining Unicode char U+00B6 (decimal 182)
defining Unicode char U+00B7 (decimal 183)
defining Unicode char U+2020 (decimal 8224)
defining Unicode char U+2021 (decimal 8225)
defining Unicode char U+2022 (decimal 8226)
)
Now handling font encoding OMX ...
... no UTF-8 mapping file for font encoding OMX
Now handling font encoding U ...
... no UTF-8 mapping file for font encoding U
defining Unicode char U+00A9 (decimal 169)
defining Unicode char U+00AA (decimal 170)
defining Unicode char U+00AE (decimal 174)
defining Unicode char U+00BA (decimal 186)
defining Unicode char U+02C6 (decimal 710)
defining Unicode char U+02DC (decimal 732)
defining Unicode char U+200C (decimal 8204)
defining Unicode char U+2026 (decimal 8230)
defining Unicode char U+2122 (decimal 8482)
defining Unicode char U+2423 (decimal 9251)
)) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty
Package: upquote 2012/04/19 v1.3 upright-quote and grave-accent glyphs in verba
tim
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
Package: textcomp 2005/09/27 v1.99g Standard LaTeX package
Package textcomp Info: Sub-encoding information:
(textcomp) 5 = only ISO-Adobe without \textcurrency
(textcomp) 4 = 5 + \texteuro
(textcomp) 3 = 4 + \textohm
(textcomp) 2 = 3 + \textestimated + \textcurrency
(textcomp) 1 = TS1 - \textcircled - \t
(textcomp) 0 = TS1 (full)
(textcomp) Font families with sub-encoding setting implement
(textcomp) only a restricted character set as indicated.
(textcomp) Family '?' is the default used for unknown fonts.
(textcomp) See the documentation for details.
Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 79.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file
Now handling font encoding TS1 ...
... processing UTF-8 mapping file for font encoding TS1
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu
File: ts1enc.dfu 2016/02/28 v1.1s UTF-8 support for inputenc
defining Unicode char U+00A2 (decimal 162)
defining Unicode char U+00A3 (decimal 163)
defining Unicode char U+00A4 (decimal 164)
defining Unicode char U+00A5 (decimal 165)
defining Unicode char U+00A6 (decimal 166)
defining Unicode char U+00A7 (decimal 167)
defining Unicode char U+00A8 (decimal 168)
defining Unicode char U+00A9 (decimal 169)
defining Unicode char U+00AA (decimal 170)
defining Unicode char U+00AC (decimal 172)
defining Unicode char U+00AE (decimal 174)
defining Unicode char U+00AF (decimal 175)
defining Unicode char U+00B0 (decimal 176)
defining Unicode char U+00B1 (decimal 177)
defining Unicode char U+00B2 (decimal 178)
defining Unicode char U+00B3 (decimal 179)
defining Unicode char U+00B4 (decimal 180)
defining Unicode char U+00B5 (decimal 181)
defining Unicode char U+00B6 (decimal 182)
defining Unicode char U+00B7 (decimal 183)
defining Unicode char U+00B9 (decimal 185)
defining Unicode char U+00BA (decimal 186)
defining Unicode char U+00BC (decimal 188)
defining Unicode char U+00BD (decimal 189)
defining Unicode char U+00BE (decimal 190)
defining Unicode char U+00D7 (decimal 215)
defining Unicode char U+00F7 (decimal 247)
defining Unicode char U+0192 (decimal 402)
defining Unicode char U+02C7 (decimal 711)
defining Unicode char U+02D8 (decimal 728)
defining Unicode char U+02DD (decimal 733)
defining Unicode char U+0E3F (decimal 3647)
defining Unicode char U+2016 (decimal 8214)
defining Unicode char U+2020 (decimal 8224)
defining Unicode char U+2021 (decimal 8225)
defining Unicode char U+2022 (decimal 8226)
defining Unicode char U+2030 (decimal 8240)
defining Unicode char U+2031 (decimal 8241)
defining Unicode char U+203B (decimal 8251)
defining Unicode char U+203D (decimal 8253)
defining Unicode char U+2044 (decimal 8260)
defining Unicode char U+204E (decimal 8270)
defining Unicode char U+2052 (decimal 8274)
defining Unicode char U+20A1 (decimal 8353)
defining Unicode char U+20A4 (decimal 8356)
defining Unicode char U+20A6 (decimal 8358)
defining Unicode char U+20A9 (decimal 8361)
defining Unicode char U+20AB (decimal 8363)
defining Unicode char U+20AC (decimal 8364)
defining Unicode char U+20B1 (decimal 8369)
defining Unicode char U+2103 (decimal 8451)
defining Unicode char U+2116 (decimal 8470)
defining Unicode char U+2117 (decimal 8471)
defining Unicode char U+211E (decimal 8478)
defining Unicode char U+2120 (decimal 8480)
defining Unicode char U+2122 (decimal 8482)
defining Unicode char U+2126 (decimal 8486)
defining Unicode char U+2127 (decimal 8487)
defining Unicode char U+212E (decimal 8494)
defining Unicode char U+2190 (decimal 8592)
defining Unicode char U+2191 (decimal 8593)
defining Unicode char U+2192 (decimal 8594)
defining Unicode char U+2193 (decimal 8595)
defining Unicode char U+2329 (decimal 9001)
defining Unicode char U+232A (decimal 9002)
defining Unicode char U+2422 (decimal 9250)
defining Unicode char U+25E6 (decimal 9702)
defining Unicode char U+25EF (decimal 9711)
defining Unicode char U+266A (decimal 9834)
))
LaTeX Info: Redefining \oldstylenums on input line 334.
Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 349.
Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 350.
Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 351.
Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 352.
Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 353.
Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 354.
Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 355.
Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 356.
Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 357.
Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 358.
Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 359.
Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 360.
Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 361.
Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 362.
Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 363.
Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 364.
Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 365.
Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 366.
Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 367.
Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 368.
Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 369.
Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 370.
Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 371.
Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 372.
Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 373.
Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 374.
Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 375.
Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 376.
Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 377.
Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 378.
Package textcomp Info: Setting lmr sub-encoding to TS1/0 on input line 379.
Package textcomp Info: Setting lmdh sub-encoding to TS1/0 on input line 380.
Package textcomp Info: Setting lmss sub-encoding to TS1/0 on input line 381.
Package textcomp Info: Setting lmssq sub-encoding to TS1/0 on input line 382.
Package textcomp Info: Setting lmvtt sub-encoding to TS1/0 on input line 383.
Package textcomp Info: Setting lmtt sub-encoding to TS1/0 on input line 384.
Package textcomp Info: Setting qhv sub-encoding to TS1/0 on input line 385.
Package textcomp Info: Setting qag sub-encoding to TS1/0 on input line 386.
Package textcomp Info: Setting qbk sub-encoding to TS1/0 on input line 387.
Package textcomp Info: Setting qcr sub-encoding to TS1/0 on input line 388.
Package textcomp Info: Setting qcs sub-encoding to TS1/0 on input line 389.
Package textcomp Info: Setting qpl sub-encoding to TS1/0 on input line 390.
Package textcomp Info: Setting qtm sub-encoding to TS1/0 on input line 391.
Package textcomp Info: Setting qzc sub-encoding to TS1/0 on input line 392.
Package textcomp Info: Setting qhvc sub-encoding to TS1/0 on input line 393.
Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 394.
Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 395.
Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 396.
Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 397.
Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 398.
Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 399.
Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 400.
Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 401.
Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 402.
Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 403.
Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 404.
Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 405.
Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 406.
Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 407.
Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 408.
Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 409.
)) (/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.sty
Package: microtype 2016/05/14 v2.6a Micro-typographical refinements (RS)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks22
)
\MT@toks=\toks23
\MT@count=\count99
LaTeX Info: Redefining \textls on input line 774.
\MT@outer@kern=\dimen112
LaTeX Info: Redefining \textmicrotypecontext on input line 1310.
\MT@listname@count=\count100
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype-pdftex.def
File: microtype-pdftex.def 2016/05/14 v2.6a Definitions specific to pdftex (RS)
LaTeX Info: Redefining \lsstyle on input line 916.
LaTeX Info: Redefining \lslig on input line 916.
\MT@outer@space=\skip46
)
Package microtype Info: Loading configuration file microtype.cfg.
(/usr/share/texlive/texmf-dist/tex/latex/microtype/microtype.cfg
File: microtype.cfg 2016/05/14 v2.6a microtype main configuration file (RS)
)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
Package: geometry 2010/09/12 v5.6 Page Geometry
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty
Package: ifpdf 2016/05/14 v3.1 Provides the ifpdf switch
) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty
Package: ifvtex 2016/05/16 v1.6 Detect VTeX and its facilities (HO)
Package ifvtex Info: VTeX not detected.
)
\Gm@cnth=\count101
\Gm@cntv=\count102
\c@Gm@tempcnt=\count103
\Gm@bindingoffset=\dimen113
\Gm@wd@mp=\dimen114
\Gm@odd@mp=\dimen115
\Gm@even@mp=\dimen116
\Gm@layoutwidth=\dimen117
\Gm@layoutheight=\dimen118
\Gm@layouthoffset=\dimen119
\Gm@layoutvoffset=\dimen120
\Gm@dimlist=\toks24
) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
Package: hyperref 2016/05/05 v6.83n Hypertext links for LaTeX
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
Package: hobsub-hyperref 2016/05/16 v1.14 Bundle oberdiek, subset hyperref (HO)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty
Package: hobsub-generic 2016/05/16 v1.14 Bundle oberdiek, subset generic (HO)
Package: hobsub 2016/05/16 v1.14 Construct package bundles (HO)
Package: infwarerr 2016/05/16 v1.4 Providing info/warning/error messages (HO)
Package: ltxcmds 2016/05/16 v1.23 LaTeX kernel commands for general use (HO)
Package hobsub Info: Skipping package `ifluatex' (already loaded).
Package hobsub Info: Skipping package `ifvtex' (already loaded).
Package: intcalc 2016/05/16 v1.2 Expandable calculations with integers (HO)
Package hobsub Info: Skipping package `ifpdf' (already loaded).
Package: etexcmds 2016/05/16 v1.6 Avoid name clashes with e-TeX commands (HO)
Package etexcmds Info: Could not find \expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined \expanded.
(etexcmds) In the latter case, load this package earlier.
Package: kvsetkeys 2016/05/16 v1.17 Key value parser (HO)
Package: kvdefinekeys 2016/05/16 v1.4 Define keys (HO)
Package: pdftexcmds 2016/05/10 v0.21 Utility functions of pdfTeX for LuaTeX (HO
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
Package: pdfescape 2016/05/16 v1.14 Implements pdfTeX's escape features (HO)
Package: bigintcalc 2016/05/16 v1.4 Expandable calculations on big integers (HO
)
Package: bitset 2016/05/16 v1.2 Handle bit-vector datatype (HO)
Package: uniquecounter 2016/05/16 v1.3 Provide unlimited unique counter (HO)
)
Package hobsub Info: Skipping package `hobsub' (already loaded).
Package: letltxmacro 2016/05/16 v1.5 Let assignment for LaTeX macros (HO)
Package: hopatch 2016/05/16 v1.3 Wrapper for package hooks (HO)
Package: xcolor-patch 2016/05/16 xcolor patch
Package: atveryend 2016/05/16 v1.9 Hooks at the very end of document (HO)
Package atveryend Info: \enddocument detected (standard20110627).
Package: atbegshi 2016/05/16 v1.17 At begin shipout hook (HO)
Package: refcount 2016/05/16 v3.5 Data extraction from label references (HO)
Package: hycolor 2016/05/16 v1.8 Color options for hyperref/bookmark (HO)
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty
Package: auxhook 2016/05/16 v1.4 Hooks for auxiliary files (HO)
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2016/05/16 v3.12 Key value format for package options (HO)
)
\@linkdim=\dimen121
\Hy@linkcounter=\count104
\Hy@pagecounter=\count105
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2016/05/05 v6.83n Hyperref: PDFDocEncoding definition (HO)
Now handling font encoding PD1 ...
... no UTF-8 mapping file for font encoding PD1
)
\Hy@SavedSpaceFactor=\count106
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg
File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
)
Package hyperref Info: Hyper figures OFF on input line 4446.
Package hyperref Info: Link nesting OFF on input line 4451.
Package hyperref Info: Hyper index ON on input line 4454.
Package hyperref Info: Plain pages OFF on input line 4461.
Package hyperref Info: Backreferencing OFF on input line 4466.
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4691.
\c@Hy@tempcnt=\count107
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip11
Package: url 2013/09/16 ver 3.4 Verb mode for urls, etc.
)
LaTeX Info: Redefining \url on input line 5044.
\XeTeXLinkMargin=\dimen122
\Fld@menulength=\count108
\Field@Width=\dimen123
\Fld@charsize=\dimen124
Package hyperref Info: Hyper figures OFF on input line 6298.
Package hyperref Info: Link nesting OFF on input line 6303.
Package hyperref Info: Hyper index ON on input line 6306.
Package hyperref Info: backreferencing OFF on input line 6313.
Package hyperref Info: Link coloring OFF on input line 6318.
Package hyperref Info: Link coloring with OCG OFF on input line 6323.
Package hyperref Info: PDF/A mode OFF on input line 6328.
LaTeX Info: Redefining \ref on input line 6368.
LaTeX Info: Redefining \pageref on input line 6372.
\Hy@abspage=\count109
\c@Item=\count110
\c@Hfootnote=\count111
)
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2016/05/05 v6.83n Hyperref driver for pdfTeX
\Fld@listcount=\count112
\c@bookmark@seq@number=\count113
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty
Package: rerunfilecheck 2016/05/16 v1.8 Rerun checks for auxiliary files (HO)
Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
82.
)
\Hy@SectionHShift=\skip47
)
Package hyperref Info: Option `unicode' set `true' on input line 30.
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def
File: puenc.def 2016/05/05 v6.83n Hyperref: PDF Unicode definition (HO)
Now handling font encoding PU ...
... no UTF-8 mapping file for font encoding PU
)
Package hyperref Info: Option `breaklinks' set `true' on input line 30.
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
Package: color 2016/05/09 v1.1c Standard LaTeX Color (DPC)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg
File: color.cfg 2016/01/02 v1.6 sample color configuration
)
Package color Info: Driver file: pdftex.def on input line 144.
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX
\Gread@gobject=\count114
)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Package: fancyvrb 2008/02/07
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
<2008/02/07> (tvz)
\FV@CodeLineNo=\count115
\FV@InFile=\read1
\FV@TabBox=\box28
\c@FancyVerbLine=\count116
\FV@StepNumber=\count117
\FV@OutFile=\write3
) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty
Package: framed 2011/10/22 v 0.96: framed or shaded text with page breaks
\OuterFrameSep=\skip48
\fb@frw=\dimen125
\fb@frh=\dimen126
\FrameRule=\dimen127
\FrameSep=\dimen128
) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty
Package: longtable 2014/10/28 v4.11 Multi-page Table package (DPC)
\LTleft=\skip49
\LTright=\skip50
\LTpre=\skip51
\LTpost=\skip52
\LTchunksize=\count118
\LTcapwidth=\dimen129
\LT@head=\box29
\LT@firsthead=\box30
\LT@foot=\box31
\LT@lastfoot=\box32
\LT@cols=\count119
\LT@rows=\count120
\c@LT@tables=\count121
\c@LT@chunks=\count122
\LT@p@ftn=\toks25
) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty
Package: booktabs 2016/04/27 v1.618033 publication quality tables
\heavyrulewidth=\dimen130
\lightrulewidth=\dimen131
\cmidrulewidth=\dimen132
\belowrulesep=\dimen133
\belowbottomsep=\dimen134
\aboverulesep=\dimen135
\abovetopsep=\dimen136
\cmidrulesep=\dimen137
\cmidrulekern=\dimen138
\defaultaddspace=\dimen139
\@cmidla=\count123
\@cmidlb=\count124
\@aboverulesep=\dimen140
\@belowrulesep=\dimen141
\@thisruleclass=\count125
\@lastruleclass=\count126
\@thisrulewidth=\dimen142
) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 2014/10/28 v1.0g Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2016/05/09 v1.0r Standard LaTeX Graphics (DPC,SPQR)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
File: graphics.cfg 2016/01/02 v1.10 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 96.
)
\Gin@req@height=\dimen143
\Gin@req@width=\dimen144
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grffile.sty
Package: grffile 2016/05/16 v1.17 Extended file name support for graphics (HO)
Package grffile Info: Option `multidot' is set to `true'.
Package grffile Info: Option `extendedchars' is set to `false'.
Package grffile Info: Option `space' is set to `true'.
Package grffile Info: \Gin@ii of package `graphicx' fixed on input line 486.
) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty
Package: parskip 2001/04/09 non-zero parskip adjustments
)
No file bioinformatics.aux.
\openout1 = `bioinformatics.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 106.
LaTeX Font Info: Try loading font information for TS1+cmr on input line 106.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd
File: ts1cmr.fd 2014/09/29 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Checking defaults for PU/pdf/m/n on input line 106.
LaTeX Font Info: ... okay on input line 106.
LaTeX Font Info: Try loading font information for T1+lmr on input line 106.
(/usr/share/texmf/tex/latex/lm/t1lmr.fd
File: t1lmr.fd 2009/10/30 v1.6 Font defs for Latin Modern
)
LaTeX Info: Redefining \microtypecontext on input line 106.
Package microtype Info: Generating PDF output.
Package microtype Info: Character protrusion enabled (level 2).
Package microtype Info: Using protrusion set `basicmath'.
Package microtype Info: Automatic font expansion enabled (level 2),
(microtype) stretch: 20, shrink: 20, step: 1, non-selected.
Package microtype Info: Using default expansion set `basictext'.
Package microtype Info: No adjustment of tracking.
Package microtype Info: No adjustment of interword spacing.
Package microtype Info: No adjustment of character kerning.
(/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-cmr.cfg
File: mt-cmr.cfg 2013/05/19 v2.2 microtype config. file: Computer Modern Roman
(RS)
)
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: <default>
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes:
* h-part:(L,W,R)=(72.26999pt, 469.75502pt, 72.26999pt)
* v-part:(T,H,B)=(72.26999pt, 650.43001pt, 72.26999pt)
* \paperwidth=614.295pt
* \paperheight=794.96999pt
* \textwidth=469.75502pt
* \textheight=650.43001pt
* \oddsidemargin=0.0pt
* \evensidemargin=0.0pt
* \topmargin=-37.0pt
* \headheight=12.0pt
* \headsep=25.0pt
* \topskip=10.0pt
* \footskip=30.0pt
* \marginparwidth=65.0pt
* \marginparsep=11.0pt
* \columnsep=10.0pt
* \skip\footins=9.0pt plus 4.0pt minus 2.0pt
* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumnfalse
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)
\AtBeginShipoutBox=\box33
Package hyperref Info: Link coloring OFF on input line 106.
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
Package: nameref 2012/10/27 v2.43 Cross-referencing by name of section
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty
Package: gettitlestring 2016/05/16 v1.5 Cleanup title references (HO)
)
\c@section@level=\count127
)
LaTeX Info: Redefining \ref on input line 106.
LaTeX Info: Redefining \pageref on input line 106.
LaTeX Info: Redefining \nameref on input line 106.
\@outlinefile=\write4
\openout4 = `bioinformatics.out'.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count128
\scratchdimen=\dimen145
\scratchbox=\box34
\nofMPsegments=\count129
\nofMParguments=\count130
\everyMPshowfont=\toks26
\MPscratchCnt=\count131
\MPscratchDim=\dimen146
\MPnumerator=\count132
\makeMPintoPDFobject=\count133
\everyMPtoPDFconversion=\toks27
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
Package: epstopdf-base 2016/05/15 v2.6 Base part for package epstopdf
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty
Package: grfext 2016/05/16 v1.2 Manage graphics extensions (HO)
)
Package grfext Info: Graphics extension search list:
(grfext) [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) \AppendGraphicsExtensions on input line 456.
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
LaTeX Font Info: Try loading font information for OT1+lmr on input line 108.
(/usr/share/texmf/tex/latex/lm/ot1lmr.fd
File: ot1lmr.fd 2009/10/30 v1.6 Font defs for Latin Modern
)
LaTeX Font Info: Try loading font information for OML+lmm on input line 108.
(/usr/share/texmf/tex/latex/lm/omllmm.fd
File: omllmm.fd 2009/10/30 v1.6 Font defs for Latin Modern
)
LaTeX Font Info: Try loading font information for OMS+lmsy on input line 108
.
(/usr/share/texmf/tex/latex/lm/omslmsy.fd
File: omslmsy.fd 2009/10/30 v1.6 Font defs for Latin Modern
)
LaTeX Font Info: Try loading font information for OMX+lmex on input line 108
.
(/usr/share/texmf/tex/latex/lm/omxlmex.fd
File: omxlmex.fd 2009/10/30 v1.6 Font defs for Latin Modern
)
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <12> on input line 108.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <8> on input line 108.
LaTeX Font Info: External font `lmex10' loaded for size
(Font) <6> on input line 108.
LaTeX Font Info: Try loading font information for U+msa on input line 108.
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
) (/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msa.cfg
File: mt-msa.cfg 2006/02/04 v1.1 microtype config. file: AMS symbols (a) (RS)
)
LaTeX Font Info: Try loading font information for U+msb on input line 108.
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
) (/usr/share/texlive/texmf-dist/tex/latex/microtype/mt-msb.cfg
File: mt-msb.cfg 2005/06/01 v1.0 microtype config. file: AMS symbols (b) (RS)
)
\tf@toc=\write5
\openout5 = `bioinformatics.toc'.
LaTeX Font Info: External font `lmex10' loaded for size