Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Exclude samples from bismark2summary if they have no methylation calls in some context #315

Closed
FelixKrueger opened this issue Feb 28, 2020 · 0 comments
Assignees

Comments

@FelixKrueger
Copy link
Owner

In some single-cell applications we have situations where close to none (or in fact no reads) make it to the methylation extraction stage. Missing values, or e.g. 0 calls methylated and 0 calls unmethylated in any context cause the plot in the HTML file to be empty.

Can we take a look if we can exclude such reads entirely from the HTML report?

@FelixKrueger FelixKrueger self-assigned this Feb 28, 2020
@FelixKrueger FelixKrueger changed the title Exclude reads from bismark2summary if they have no methylation calls in some context Exclude samples from bismark2summary if they have no methylation calls in some context Sep 29, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant