diff --git a/src/Config.js b/src/Config.js
index d4e70f8..b32a67f 100644
--- a/src/Config.js
+++ b/src/Config.js
@@ -5,12 +5,13 @@ import {
     has
 } from 'lodash';
 import ConfigDependency from './ConfigDependency';
+import ConfigCommandInvoker from './ConfigCommandInvoker';
 
 /**
  * @private
- * @type {String}
+ * @type {WeakMap}
  */
-const DEPENDENCY_TREE = 'DEPENDENCY_TREE';
+const DEPENDENCY_TREE = new WeakMap();
 
 /**
  * @private
@@ -36,21 +37,6 @@ const MERGE_COMMAND = new WeakMap();
  */
 const EXTEND_COMMAND = new WeakMap();
 
-/**
- * @private
- * @param {Config} config
- * @param {ConfigCommand} command
- * @param {...*} values
- * @returns {Config}
- */
-const executeCommand = (config, command, ...values) => {
-    for (const value of values) {
-        command.execute(config, value);
-    }
-
-    return config;
-};
-
 /**
  * @class
  */
@@ -109,7 +95,7 @@ class Config {
      *
      * config.extend('./test/fixtures/webpack.1.config.js');
      *
-     * for (let {node} of config.dependencyTree) {
+     * for (const {node} of config.dependencyTree) {
      *   console.log(node.root.filename);
      * }
      * // ./test/fixtures/webpack.1.config.js
@@ -117,16 +103,24 @@ class Config {
      * // ./test/fixtures/webpack.3.config.js
      * // ./test/fixtures/webpack.5.config.js
      * // ./test/fixtures/webpack.4.config.js
-     * @description Keeps information about configs which have been loaded via {@link Config#extend}
+     * @description Holds information about [included]{@link Config#extend} configs
      * @readonly
      * @type {ConfigDependency}
      */
     get dependencyTree() {
-        if (!this[DEPENDENCY_TREE]) {
-            this[DEPENDENCY_TREE] = new ConfigDependency(this);
+        if (!DEPENDENCY_TREE.has(this)) {
+            DEPENDENCY_TREE.set(this, new ConfigDependency(this));
         }
 
-        return this[DEPENDENCY_TREE];
+        return DEPENDENCY_TREE.get(this);
+    }
+
+    /**
+     * @private
+     * @param {ConfigDependency} value
+     */
+    set dependencyTree(value) {
+        DEPENDENCY_TREE.set(this, value);
     }
 
     /**
@@ -150,7 +144,7 @@ class Config {
      * @returns {Config}
      */
     defaults(...values) {
-        return executeCommand(this, this.defaultsCommand, ...values);
+        return new ConfigCommandInvoker(this.defaultsCommand).invoke(this, ...values);
     }
 
     /**
@@ -175,7 +169,7 @@ class Config {
      * @returns {Config}
      */
     merge(...values) {
-        return executeCommand(this, this.mergeCommand, ...values);
+        return new ConfigCommandInvoker(this.mergeCommand).invoke(this, ...values);
     }
 
     /**
@@ -222,7 +216,7 @@ class Config {
      * @returns {Config}
      */
     extend(...values) {
-        return executeCommand(this, this.extendCommand, ...values);
+        return new ConfigCommandInvoker(this.extendCommand).invoke(this, ...values);
     }
 
     /**
@@ -241,7 +235,11 @@ class Config {
      * @returns {Config}
      */
     clone() {
-        return new Config(this.factory, this.defaultsCommand, this.mergeCommand, this.extendCommand).merge(this.toObject());
+        const config = new Config(this.factory, this.defaultsCommand, this.mergeCommand, this.extendCommand);
+
+        config.dependencyTree = new ConfigDependency(config, this.dependencyTree.children);
+
+        return config.merge(this.toObject());
     }
 
     /**
@@ -268,8 +266,6 @@ class Config {
             }
         }
 
-        delete properties[DEPENDENCY_TREE];
-
         return properties;
     }
 
diff --git a/src/ConfigCommandInvoker.js b/src/ConfigCommandInvoker.js
new file mode 100644
index 0000000..e5276b9
--- /dev/null
+++ b/src/ConfigCommandInvoker.js
@@ -0,0 +1,41 @@
+/**
+ * @private
+ * @type {WeakMap}
+ */
+const COMMAND = new WeakMap();
+
+/**
+ * @class
+ */
+class ConfigCommandInvoker {
+    /**
+     * @constructor
+     * @param {ConfigCommand} command
+     */
+    constructor(command) {
+        COMMAND.set(this, command);
+    }
+
+    /**
+     * @readonly
+     * @type {ConfigCommand}
+     */
+    get command() {
+        return COMMAND.get(this);
+    }
+
+    /**
+     * @param {Config} config
+     * @param {...*} values
+     * @returns {Config}
+     */
+    invoke(config, ...values) {
+        for (const value of values) {
+            this.command.execute(config, value);
+        }
+
+        return config;
+    }
+}
+
+export default ConfigCommandInvoker;
diff --git a/src/ConfigFactory.js b/src/ConfigFactory.js
index 0773a0e..a079f6a 100644
--- a/src/ConfigFactory.js
+++ b/src/ConfigFactory.js
@@ -33,13 +33,19 @@ class ConfigFactory {
 
     /**
      * @private
-     * @param {Object} options
+     * @param {Object|Config} value
      * @returns {Config}
      */
-    initWith(options) {
-        const config = this.container.resolve(Config);
+    initWith(value) {
+        let config;
+
+        if (value instanceof Config) {
+            config = value.clone();
+        } else {
+            config = this.container.resolve(Config).merge(value);
+        }
 
-        return config.merge(options);
+        return config;
     }
 
     /**