A collection of nextflow pipelines
Nextflow is A DSL for data-driven computational pipelines. It is particularly well suited for Bioinformatics.
To install nextflow (make sure you have java installed):
curl -fsSL get.nextflow.io | bash
Nonpareil: Estimate average coverage and create Nonpareil curves for metagenomic datasets.
Variant_calling: Simple variant calling pipeline using samtools mpileup.
Assembly: Simple assembly pipeline using velvet.
Sourmash: Compute and compare MinHash signatures for DNA data sets.
Prokka: An annotation pipeline for bacterial genomes.