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Complete inDrops support in optimus #762

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kbergin opened this issue Aug 2, 2019 · 0 comments
Open

Complete inDrops support in optimus #762

kbergin opened this issue Aug 2, 2019 · 0 comments

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@kbergin
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kbergin commented Aug 2, 2019

Finish work started during the pipeline surge for adding inDrops support to the Optimus pipeline.

A summary of the current sate of the project can be found here. Questions can be directed to Polina or Jess.

Why we are doing this:
Optimus support for inDrops was not quite finished during the surge.

Where to start:
Polina has added code to sctools to parse and attach inDrops barcodes as well as create a barcode whitelist based on the 2 barcode system. These changes have not been merged but can be found on the phs_add_inDrop_clp branch in the sctools repo.

Polina has also added options to Optimus to support inDrops which can be found on a similarly named branch in the skylab repo.

ACs:

  • Optimus runs with inDrops data
  • Tests for inDrops run on PR
  • Scientific tests available ❓

┆Issue is synchronized with this Jira Dev Task

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