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nextflow.config
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nextflow.config
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manifest {
homePage = 'https://github.com/IARCbioinfo/Imputation-nf'
description = 'Pipeline for the imputation of a target dataset against a reference'
mainScript = 'Imputation.nf'
}
profiles {
conda {
process.conda = "$baseDir/environment.yml"
conda.createTimeout = "200 min"
}
docker {
docker.enabled = true
process.container = 'iarcbioinfo/imputation-nf:v1.1'
}
singularity {
singularity.enabled = true
singularity.autoMounts = true
process.container = 'docker://iarcbioinfo/imputation-nf:v1.1'
}
}
process {
shell = ['/bin/bash','-o','pipefail']
}
params {
output_folder = "."
}
timeline {
enabled = true
file = "${params.output_folder}/nf-pipeline_info/Imputation_timeline.html"
}
report {
enabled = true
file = "${params.output_folder}/nf-pipeline_info/Imputation_report.html"
}
trace {
enabled = true
file = "${params.output_folder}/nf-pipeline_info/Imputation_trace.txt"
}
dag {
enabled = true
file = "${params.output_folder}/nf-pipeline_info/Imputation_dag.html"
}