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This repository has been archived by the owner on Jul 22, 2024. It is now read-only.
WE46901:run_example kimd999$ cat domain_list.txt
/Users/kimd999/research/projects/Margaret/code/fold2seq/data/example/1aj4A00-2-161 1aj4 A 2 161
/Users/kimd999/research/projects/Margaret/code/fold2seq/data/example/1bzqK00-801-924 1bzq K 801 924
/Users/kimd999/research/projects/Margaret/code/fold2seq/data/example/1ge0A00-1-130 1ge0 A 1 130
I see
total number of seqs: 470679
removed # seqs in ss.txt: 9337
Traceback (most recent call last):
File "/Users/kimd999/research/projects/Margaret/code/fold2seq/data/fold_feat_gen.py", line 152, in <module>
x1,x2 = selection(line[0] , line[2], int(line[3]), int(line[4]), seq_ss)
File "/Users/kimd999/research/projects/Margaret/code/fold2seq/data/fold_feat_gen.py", line 42, in selection
start = start.replace(')','')
AttributeError: 'int' object has no attribute 'replace'
The text was updated successfully, but these errors were encountered:
I'm not sure whether
#1
is fixed.
With example data
I see
The text was updated successfully, but these errors were encountered: