From 20c108a59f94fc0dfdd6d61d37bde3222a3f17b3 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 11:18:35 +0100 Subject: [PATCH 1/7] :construction_worker: Create ci_template --- .github/workflows/ci_template.yml | 38 +++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 .github/workflows/ci_template.yml diff --git a/.github/workflows/ci_template.yml b/.github/workflows/ci_template.yml new file mode 100644 index 0000000..09c03d1 --- /dev/null +++ b/.github/workflows/ci_template.yml @@ -0,0 +1,38 @@ +name: Test + +on: + workflow_call: + inputs: + os: + description: 'Operating system' + default: '["ubuntu-latest", "windows-latest"]' + type: string + python-version: + description: 'Python version' + default: '["3.10"]' + type: string + +jobs: + test: + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + os: ${{fromJson(inputs.os)}} + python-version: ${{fromJson(inputs.python-version)}} + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + + - name: Install Poetry + uses: abatilo/actions-poetry@v2.0.0 + with: + poetry-version: 1.1.11 + + - name: Install dependencies + run: poetry install + + - name: Run tests + run: poetry run pytest \ No newline at end of file From cf9272639c89c57ec4fd280a0e2c17156ba6bf45 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 11:28:28 +0100 Subject: [PATCH 2/7] :arrow_up: python version to ^3.9 --- pyproject.toml | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 6f195c4..f076775 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,10 +11,12 @@ classifiers = [ "Intended Audience :: Developers", "Intended Audience :: Science/Research", "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11" + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "License :: OSI Approved :: BSD License", + "Operating System :: OS Independent", ] packages = [ @@ -22,7 +24,7 @@ packages = [ ] [tool.poetry.dependencies] -python = "^3.8" +python = "^3.9" PyYAML = "^6.0" [tool.poetry.group.dev] From af31b9ea27c086b4dfecdbb5905458e574ba9e19 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 11:31:06 +0100 Subject: [PATCH 3/7] :construction_worker: Create publish and update test and check links tempaltes. --- .github/workflows/check-links.yml | 5 ++ .github/workflows/ci.yml | 78 +++---------------------- .github/workflows/ci_template.yml | 15 +++-- .github/workflows/publish.yml | 96 +++++++++++++++++++++++++++++++ 4 files changed, 118 insertions(+), 76 deletions(-) create mode 100644 .github/workflows/publish.yml diff --git a/.github/workflows/check-links.yml b/.github/workflows/check-links.yml index 38fa0d7..75b6eb3 100644 --- a/.github/workflows/check-links.yml +++ b/.github/workflows/check-links.yml @@ -1,5 +1,10 @@ name: Check links in Markdown files + on: + push: + branches: + - main + pull_request: schedule: - cron: "0 0 * * 1" # midnight every Monday diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 15e9e54..a8e5730 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,75 +1,11 @@ -name: Test and build +name: Test -on: [push, pull_request, release] +on: + push: + branches: + - main + pull_request: jobs: - qa: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - uses: pre-commit/action@v3.0.0 - - check-links: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - uses: gaurav-nelson/github-action-markdown-link-check@v1 - name: Check links in markdown files - with: - use-quiet-mode: 'yes' - use-verbose-mode: 'yes' - test: - needs: qa - runs-on: ${{ matrix.os }} - strategy: - fail-fast: false - matrix: - os: [ windows-latest, ubuntu-latest, macos-latest ] - python-version: [ "3.8", "3.9", "3.10", "3.11" ] - - steps: - - uses: actions/checkout@v3 - - - uses: actions/setup-python@v4 - with: - python-version: ${{ matrix.python-version }} - - - name: Install Poetry - uses: abatilo/actions-poetry@v2.3.0 - with: - poetry-version: 1.5.1 - - - name: Install dependencies - run: poetry install --with dev - - - name: Run tests - run: poetry run pytest - - - name: Upload coverage to Codecov - if: success() && (matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9) - uses: codecov/codecov-action@v3 - - - deploy-docs: - needs: test - runs-on: ubuntu-latest - if: github.ref == 'refs/heads/main' - - steps: - - uses: actions/checkout@v3 - - - uses: actions/setup-python@v4 - with: - python-version: 3.9 - - - name: Install Poetry - uses: abatilo/actions-poetry@v2.3.0 - with: - poetry-version: 1.5.1 - - - name: Install dependencies - run: poetry install --with docs - - - name: Deploy Docs - run: poetry run mkdocs gh-deploy --force + uses: ./.github/workflows/ci_template.yml \ No newline at end of file diff --git a/.github/workflows/ci_template.yml b/.github/workflows/ci_template.yml index 09c03d1..6ed2709 100644 --- a/.github/workflows/ci_template.yml +++ b/.github/workflows/ci_template.yml @@ -9,7 +9,7 @@ on: type: string python-version: description: 'Python version' - default: '["3.10"]' + default: '["3.12"]' type: string jobs: @@ -27,12 +27,17 @@ jobs: python-version: ${{ matrix.python-version }} - name: Install Poetry - uses: abatilo/actions-poetry@v2.0.0 + uses: abatilo/actions-poetry@v2.3.0 with: - poetry-version: 1.1.11 + poetry-version: 1.5.1 - name: Install dependencies - run: poetry install + run: poetry install --with dev - name: Run tests - run: poetry run pytest \ No newline at end of file + run: poetry run pytest + + - name: Upload coverage to Codecov + if: success() && (matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9) + uses: codecov/codecov-action@v3 + diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml new file mode 100644 index 0000000..00d728f --- /dev/null +++ b/.github/workflows/publish.yml @@ -0,0 +1,96 @@ +name: Publish + +on: + release: + types: [published] + +permissions: + contents: write + attestations: write + id-token: write + +jobs: + test: + uses: ./.github/workflows/ci_template.yml + with: + os: '["ubuntu-latest", "windows-latest", "macos-latest"]' + python-version: '["3.9", "3.10", "3.11", "3.12"]' + + build-wheel: + needs: test + name: Build source distribution + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + + - uses: hynek/build-and-inspect-python-package@v2 + with: + attest-build-provenance-github: true + skip-wheel: true + + publish-docs: + needs: build-wheel + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v3 + + - uses: actions/setup-python@v4 + with: + python-version: 3.9 + + - name: Install Poetry + uses: abatilo/actions-poetry@v2.3.0 + with: + poetry-version: 1.5.1 + + - name: Install dependencies + run: poetry install --with docs + + - name: Deploy Docs + run: poetry run mkdocs gh-deploy --force + + publish-TestPyPI: + needs: publish-docs + name: Publish to TestPyPI + runs-on: ubuntu-latest + + steps: + - name: Download packages built by build-and-inspect-python-package + uses: actions/download-artifact@v4 + with: + name: Packages + path: dist + + - name: Generate artifact attestation for sdist and wheel + uses: actions/attest-build-provenance@v1 + with: + subject-path: dist + + - name: Publish package distributions to TestPyPI + uses: pypa/gh-action-pypi-publish@release/v1 + with: + repository-url: https://test.pypi.org/legacy/ + skip-existing: true + + publish-PyPI: + needs: publish-TestPyPI + name: Publish to PyPI + runs-on: ubuntu-latest + + steps: + - name: Download packages built by build-and-inspect-python-package + uses: actions/download-artifact@v4 + with: + name: Packages + path: dist + + - name: Generate artifact attestation for sdist and wheel + uses: actions/attest-build-provenance@v1 + with: + subject-path: dist + + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 From 3ed6f84aee5932c38b23c6d675041d7aa7006554 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 11:36:03 +0100 Subject: [PATCH 4/7] :construction_worker: Remove name in publish and CI workflows. --- .github/workflows/ci.yml | 2 -- .github/workflows/publish.yml | 2 -- 2 files changed, 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index a8e5730..f98b771 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,5 +1,3 @@ -name: Test - on: push: branches: diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 00d728f..a2b96cc 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -1,5 +1,3 @@ -name: Publish - on: release: types: [published] From 68713a1c71f5009de793db4ee6c813ed5d37ca67 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 12:02:21 +0100 Subject: [PATCH 5/7] :construction_worker: Update poetry in CI. --- .github/workflows/ci_template.yml | 2 +- .github/workflows/publish.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci_template.yml b/.github/workflows/ci_template.yml index 6ed2709..3f21ef5 100644 --- a/.github/workflows/ci_template.yml +++ b/.github/workflows/ci_template.yml @@ -29,7 +29,7 @@ jobs: - name: Install Poetry uses: abatilo/actions-poetry@v2.3.0 with: - poetry-version: 1.5.1 + poetry-version: 1.8.3 - name: Install dependencies run: poetry install --with dev diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index a2b96cc..ffa9b0c 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -42,7 +42,7 @@ jobs: - name: Install Poetry uses: abatilo/actions-poetry@v2.3.0 with: - poetry-version: 1.5.1 + poetry-version: 1.8.3 - name: Install dependencies run: poetry install --with docs From af7631c4de4b04d165d0280401dcf0cc569fd9a9 Mon Sep 17 00:00:00 2001 From: Diego Alonso Alvarez Date: Tue, 1 Oct 2024 12:02:55 +0100 Subject: [PATCH 6/7] :arrow_up: Pin pandas to >2.0.0 and update all dependencies --- poetry.lock | 1301 ++++++++++++++++++++++++++---------------------- pyproject.toml | 2 +- 2 files changed, 709 insertions(+), 594 deletions(-) diff --git a/poetry.lock b/poetry.lock index b34ce94..ba0b263 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,55 +1,53 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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hooks: - id: black - - repo: https://github.com/PyCQA/flake8 - rev: 6.0.0 - hooks: - - id: flake8 + # - repo: https://github.com/PyCQA/flake8 + # rev: 6.0.0 + # hooks: + # - id: flake8 - repo: https://github.com/pre-commit/mirrors-mypy rev: "v0.991" hooks: