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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.6.25">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<meta name="author" content="Indrajeet Patil">
<meta name="keywords" content="r packages, software development, software engineering, r">
<title>Awesome R Package Development Tools</title>
<style>
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<script src="README_files/libs/clipboard/clipboard.min.js"></script>
<script src="README_files/libs/quarto-html/quarto.js"></script>
<script src="README_files/libs/quarto-html/popper.min.js"></script>
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</head>
<body>
<div id="quarto-content" class="page-columns page-rows-contents page-layout-article">
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
<nav id="TOC" role="doc-toc" class="toc-active">
<h2 id="toc-title">Table of contents</h2>
<ul>
<li><a href="#code-of-conduct" id="toc-code-of-conduct" class="nav-link active" data-scroll-target="#code-of-conduct">Code of Conduct</a></li>
<li><a href="#swiss-army-knives" id="toc-swiss-army-knives" class="nav-link" data-scroll-target="#swiss-army-knives">Swiss army knives 🛠</a></li>
<li><a href="#package-templates" id="toc-package-templates" class="nav-link" data-scroll-target="#package-templates">Package templates 💀</a>
<ul class="collapse">
<li><a href="#generic" id="toc-generic" class="nav-link" data-scroll-target="#generic">Generic</a></li>
<li><a href="#rmarkdown-based" id="toc-rmarkdown-based" class="nav-link" data-scroll-target="#rmarkdown-based">RMarkdown-based</a></li>
<li><a href="#shiny" id="toc-shiny" class="nav-link" data-scroll-target="#shiny">Shiny</a></li>
<li><a href="#meta-packages" id="toc-meta-packages" class="nav-link" data-scroll-target="#meta-packages">Meta-packages</a></li>
</ul></li>
<li><a href="#naming-things" id="toc-naming-things" class="nav-link" data-scroll-target="#naming-things">Naming things 🧸</a></li>
<li><a href="#working-with-package-components" id="toc-working-with-package-components" class="nav-link" data-scroll-target="#working-with-package-components">Working with package components</a></li>
<li><a href="#package-configuration" id="toc-package-configuration" class="nav-link" data-scroll-target="#package-configuration">Package configuration</a></li>
<li><a href="#package-management-tools" id="toc-package-management-tools" class="nav-link" data-scroll-target="#package-management-tools">Package management tools</a></li>
<li><a href="#documentation" id="toc-documentation" class="nav-link" data-scroll-target="#documentation">Documentation 📚</a>
<ul class="collapse">
<li><a href="#manual" id="toc-manual" class="nav-link" data-scroll-target="#manual">Manual</a></li>
<li><a href="#math-rendering-in-htmlpdf-manual" id="toc-math-rendering-in-htmlpdf-manual" class="nav-link" data-scroll-target="#math-rendering-in-htmlpdf-manual">Math rendering in HTML/PDF manual</a></li>
<li><a href="#vignettes" id="toc-vignettes" class="nav-link" data-scroll-target="#vignettes">Vignettes</a></li>
<li><a href="#tutorials" id="toc-tutorials" class="nav-link" data-scroll-target="#tutorials">Tutorials</a></li>
<li><a href="#website" id="toc-website" class="nav-link" data-scroll-target="#website">Website</a></li>
<li><a href="#translation" id="toc-translation" class="nav-link" data-scroll-target="#translation">Translation</a></li>
<li><a href="#lifecycle" id="toc-lifecycle" class="nav-link" data-scroll-target="#lifecycle">Lifecycle</a></li>
<li><a href="#badges-and-stickers" id="toc-badges-and-stickers" class="nav-link" data-scroll-target="#badges-and-stickers">Badges and stickers</a></li>
<li><a href="#presentation" id="toc-presentation" class="nav-link" data-scroll-target="#presentation">Presentation</a></li>
<li><a href="#book" id="toc-book" class="nav-link" data-scroll-target="#book">Book</a></li>
<li><a href="#change-log-and-versioning" id="toc-change-log-and-versioning" class="nav-link" data-scroll-target="#change-log-and-versioning">Change log and versioning</a></li>
</ul></li>
<li><a href="#documentation-quality" id="toc-documentation-quality" class="nav-link" data-scroll-target="#documentation-quality">Documentation quality ✒️</a></li>
<li><a href="#logging" id="toc-logging" class="nav-link" data-scroll-target="#logging">Logging 📝</a></li>
<li><a href="#unit-testing" id="toc-unit-testing" class="nav-link" data-scroll-target="#unit-testing">Unit testing 🧪</a>
<ul class="collapse">
<li><a href="#generic-r-packages" id="toc-generic-r-packages" class="nav-link" data-scroll-target="#generic-r-packages">Generic R Packages</a></li>
<li><a href="#webdatabase-applications" id="toc-webdatabase-applications" class="nav-link" data-scroll-target="#webdatabase-applications">Web/database applications</a></li>
<li><a href="#visual-regression-testing" id="toc-visual-regression-testing" class="nav-link" data-scroll-target="#visual-regression-testing">Visual regression testing</a></li>
<li><a href="#mock-testing" id="toc-mock-testing" class="nav-link" data-scroll-target="#mock-testing">Mock testing</a></li>
<li><a href="#mutation-testing" id="toc-mutation-testing" class="nav-link" data-scroll-target="#mutation-testing">Mutation testing</a></li>
<li><a href="#markdown-documents" id="toc-markdown-documents" class="nav-link" data-scroll-target="#markdown-documents">Markdown documents</a></li>
<li><a href="#shiny-applications" id="toc-shiny-applications" class="nav-link" data-scroll-target="#shiny-applications">Shiny applications</a></li>
<li><a href="#helpers-for-testing-frameworks" id="toc-helpers-for-testing-frameworks" class="nav-link" data-scroll-target="#helpers-for-testing-frameworks">Helpers for testing frameworks</a></li>
</ul></li>
<li><a href="#codedocument-formatting" id="toc-codedocument-formatting" class="nav-link" data-scroll-target="#codedocument-formatting">Code/Document Formatting 🧽</a></li>
<li><a href="#code-analysis" id="toc-code-analysis" class="nav-link" data-scroll-target="#code-analysis">Code analysis 🗂⏱</a>
<ul class="collapse">
<li><a href="#general" id="toc-general" class="nav-link" data-scroll-target="#general">General</a></li>
<li><a href="#code-review" id="toc-code-review" class="nav-link" data-scroll-target="#code-review">Code review</a></li>
<li><a href="#code-coverage" id="toc-code-coverage" class="nav-link" data-scroll-target="#code-coverage">Code coverage</a></li>
<li><a href="#code-quality" id="toc-code-quality" class="nav-link" data-scroll-target="#code-quality">Code quality</a></li>
<li><a href="#code-complexity" id="toc-code-complexity" class="nav-link" data-scroll-target="#code-complexity">Code complexity</a></li>
<li><a href="#code-similarity" id="toc-code-similarity" class="nav-link" data-scroll-target="#code-similarity">Code similarity</a></li>
<li><a href="#compiled-code" id="toc-compiled-code" class="nav-link" data-scroll-target="#compiled-code">Compiled code</a></li>
<li><a href="#javascript-code" id="toc-javascript-code" class="nav-link" data-scroll-target="#javascript-code">JavaScript code</a></li>
<li><a href="#lines-of-code" id="toc-lines-of-code" class="nav-link" data-scroll-target="#lines-of-code">Lines of code</a></li>
</ul></li>
<li><a href="#refactoring" id="toc-refactoring" class="nav-link" data-scroll-target="#refactoring">Refactoring</a></li>
<li><a href="#code-performance" id="toc-code-performance" class="nav-link" data-scroll-target="#code-performance">Code performance ⏱️</a>
<ul class="collapse">
<li><a href="#benchmarking" id="toc-benchmarking" class="nav-link" data-scroll-target="#benchmarking">Benchmarking</a></li>
<li><a href="#profiling" id="toc-profiling" class="nav-link" data-scroll-target="#profiling">Profiling</a></li>
</ul></li>
<li><a href="#reproducible-environments" id="toc-reproducible-environments" class="nav-link" data-scroll-target="#reproducible-environments">Reproducible Environments 🌐</a>
<ul class="collapse">
<li><a href="#package-management" id="toc-package-management" class="nav-link" data-scroll-target="#package-management">Package management</a></li>
<li><a href="#containerization" id="toc-containerization" class="nav-link" data-scroll-target="#containerization">Containerization 🛍</a></li>
</ul></li>
<li><a href="#dependency-management" id="toc-dependency-management" class="nav-link" data-scroll-target="#dependency-management">Dependency Management ⚖️</a></li>
<li><a href="#cranbioconductor-checks" id="toc-cranbioconductor-checks" class="nav-link" data-scroll-target="#cranbioconductor-checks">CRAN/Bioconductor checks 📬</a></li>
<li><a href="#usage" id="toc-usage" class="nav-link" data-scroll-target="#usage">Usage 🙈</a></li>
<li><a href="#cicd" id="toc-cicd" class="nav-link" data-scroll-target="#cicd">CI/CD 📟</a></li>
<li><a href="#securityprivacy" id="toc-securityprivacy" class="nav-link" data-scroll-target="#securityprivacy">Security/Privacy 👮</a></li>
<li><a href="#build-systems" id="toc-build-systems" class="nav-link" data-scroll-target="#build-systems">Build systems</a></li>
<li><a href="#debugging" id="toc-debugging" class="nav-link" data-scroll-target="#debugging">Debugging 🔭</a></li>
<li><a href="#input-validation" id="toc-input-validation" class="nav-link" data-scroll-target="#input-validation">Input validation 🔬</a>
<ul class="collapse">
<li><a href="#function-argument-validation" id="toc-function-argument-validation" class="nav-link" data-scroll-target="#function-argument-validation">Function argument validation</a></li>
<li><a href="#data-validation" id="toc-data-validation" class="nav-link" data-scroll-target="#data-validation">Data validation</a></li>
</ul></li>
<li><a href="#package-metadata" id="toc-package-metadata" class="nav-link" data-scroll-target="#package-metadata">Package metadata 🖨</a></li>
<li><a href="#reverse-dependency-checks" id="toc-reverse-dependency-checks" class="nav-link" data-scroll-target="#reverse-dependency-checks">Reverse dependency checks 📡⚰️</a></li>
<li><a href="#gratitude" id="toc-gratitude" class="nav-link" data-scroll-target="#gratitude">Gratitude 🙏💌</a></li>
<li><a href="#integration-with-other-languages" id="toc-integration-with-other-languages" class="nav-link" data-scroll-target="#integration-with-other-languages">Integration with other languages 🔗</a>
<ul class="collapse">
<li><a href="#c" id="toc-c" class="nav-link" data-scroll-target="#c">C++</a></li>
<li><a href="#fortran" id="toc-fortran" class="nav-link" data-scroll-target="#fortran">Fortran</a></li>
<li><a href="#python" id="toc-python" class="nav-link" data-scroll-target="#python">Python</a></li>
<li><a href="#rust" id="toc-rust" class="nav-link" data-scroll-target="#rust">Rust</a></li>
<li><a href="#net-framework" id="toc-net-framework" class="nav-link" data-scroll-target="#net-framework">.NET Framework</a></li>
<li><a href="#javascripthtmlcss" id="toc-javascripthtmlcss" class="nav-link" data-scroll-target="#javascripthtmlcss">JavaScript/HTML/CSS</a></li>
<li><a href="#julia" id="toc-julia" class="nav-link" data-scroll-target="#julia">Julia</a></li>
</ul></li>
<li><a href="#upkeep" id="toc-upkeep" class="nav-link" data-scroll-target="#upkeep">Upkeep 🧹</a></li>
<li><a href="#sundry" id="toc-sundry" class="nav-link" data-scroll-target="#sundry">Sundry 🗒</a></li>
<li><a href="#session-information" id="toc-session-information" class="nav-link" data-scroll-target="#session-information">Session information</a></li>
</ul>
<div class="quarto-alternate-formats"><h2>Other Formats</h2><ul><li><a href="README.md"><i class="bi bi-file-code"></i>CommonMark</a></li></ul></div></nav>
</div>
<main class="content" id="quarto-document-content">
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<h1 class="title">Awesome R Package Development Tools</h1>
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<div class="quarto-title-meta-heading">Author</div>
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<p>Indrajeet Patil </p>
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<div class="quarto-title-meta-heading">Modified</div>
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<p class="date-modified">October 13, 2024</p>
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<div class="keywords">
<div class="block-title">Keywords</div>
<p>r packages, software development, software engineering, r</p>
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<p>A curated list of awesome tools to assist 📦 development in R programming language.</p>
<p><a href="https://awesome.re/"><img src="https://awesome.re/badge.svg" class="img-fluid" alt="Awesome"></a> <a href="https://www.trackawesomelist.com/"><img src="https://www.trackawesomelist.com/badge.svg" class="img-fluid" alt="Track Awesome List"></a></p>
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What is included?
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<ul>
<li>Only <em>tools</em> helpful for package development are included, and not other resources (e.g. books).</li>
<li>All relevant tools are included, irrespective of their availability on <a href="https://cran.r-project.org/">CRAN</a>/<a href="https://www.bioconductor.org/">Bioconductor</a>.</li>
<li>Tools which are part of publicly archived/retired GitHub repositories are <em>not</em> included.</li>
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<p>If you wish to suggest any additional tools, please make a PR or create an issue <a href="https://github.com/IndrajeetPatil/awesome-r-pkgtools/">here</a>.</p>
<section id="code-of-conduct" class="level1">
<h1>Code of Conduct</h1>
<p>Please note that the <code>awesome-r-pkgtools</code> project is released with a <a href="https://github.com/IndrajeetPatil/awesome-r-pkgtools/blob/main/.github/CODE_OF_CONDUCT.md/">Contributor Code of Conduct</a>. By contributing to this project, you agree to abide by its terms.</p>
</section>
<section id="swiss-army-knives" class="level1">
<h1>Swiss army knives 🛠</h1>
<p>Tools useful across all stages of package development (some of these are meta-packages and their component packages are also included in respective sections for the sake of completeness), irrespective of whether the package is meant to be submitted to CRAN or Bioconductor.</p>
<ul>
<li><p><a href="https://usethis.r-lib.org"><code>{usethis}</code></a></p></li>
<li><p><a href="https://devtools.r-lib.org"><code>{devtools}</code></a></p></li>
<li><p><a href="https://lcolladotor.github.io/biocthis/"><code>{biocthis}</code></a></p></li>
<li><p><a href="https://gitlab.com/fvafrcu/packager"><code>{packager}</code></a></p></li>
<li><p><a href="https://polkas.github.io/pacs/"><code>{pacs}</code></a></p></li>
<li><p><a href="https://renozao.github.io/pkgmaker/index.html"><code>{pkgmaker}</code></a></p></li>
</ul>
</section>
<section id="package-templates" class="level1">
<h1>Package templates 💀</h1>
<section id="generic" class="level2">
<h2 class="anchored" data-anchor-id="generic">Generic</h2>
<ul>
<li><p><a href="https://dirk.eddelbuettel.com/code/pkgkitten.html"><code>{pkgkitten}</code></a> (useful for creating new packages for R)</p></li>
<li><p><a href="https://frbcesab.github.io/rcompendium/"><code>{rcompendium}</code></a> (to make the creation of R package/research compendium easier)</p></li>
<li><p><a href="https://github.com/insightsengineering/r.pkg.template/"><code>{r.pkg.template}</code></a> (an opinionated R package template with CI/CD built-in)</p></li>
<li><p><a href="https://github.com/nealrichardson/skeletor/"><code>{skeletor}</code></a> (An R Package Skeleton Generator)</p></li>
</ul>
</section>
<section id="rmarkdown-based" class="level2">
<h2 class="anchored" data-anchor-id="rmarkdown-based">RMarkdown-based</h2>
<ul>
<li><p><a href="https://thinkr-open.github.io/fusen/"><code>{fusen}</code></a> (to build a package from RMarkdown files)</p></li>
<li><p><a href="http://faculty.marshall.usc.edu/jacob-bien/litr/docs/"><code>{litr}</code></a> (to write a complete R package in a single R markdown document)</p></li>
</ul>
</section>
<section id="shiny" class="level2">
<h2 class="anchored" data-anchor-id="shiny">Shiny</h2>
<ul>
<li><p><a href="https://github.com/ThinkR-open/golem/"><code>{golem}</code></a> (framework for building shiny applications)</p></li>
<li><p><a href="https://github.com/devOpifex/leprechaun/"><code>{leprechaun}</code></a> (leaner framework for building shiny applications)</p></li>
<li><p><a href="https://appsilon.github.io/rhino/"><code>{rhino}</code></a> (a framework to build high quality, enterprise-grade Shiny apps at speed)</p></li>
</ul>
</section>
<section id="meta-packages" class="level2">
<h2 class="anchored" data-anchor-id="meta-packages">Meta-packages</h2>
<ul>
<li><p><a href="https://pkgverse.mikewk.com"><code>{pkgverse}</code></a> (for package meta-verse)</p></li>
<li><p><a href="https://github.com/jdtrat/metamakr/"><code>{metamakr}</code></a> (for package meta-verse)</p></li>
</ul>
</section>
</section>
<section id="naming-things" class="level1">
<h1>Naming things 🧸</h1>
<ul>
<li><p><a href="https://cran.r-project.org/package=available"><code>{available}</code></a> (to check if a package name is available to use)</p></li>
<li><p><a href="https://cran.r-project.org/package=collidr"><code>{collidr}</code></a> (to check for namespace collisions)</p></li>
<li><p><a href="https://cran.r-project.org/package=changer"><code>{changer}</code></a> (to change the name of an existing R package)</p></li>
</ul>
</section>
<section id="working-with-package-components" class="level1">
<h1>Working with package components</h1>
<ul>
<li><p><a href="https://rprojroot.r-lib.org"><code>{rprojroot}</code></a> (accessing files w.r.t. package root directory)</p></li>
<li><p><a href="https://github.com/r-lib/desc#readme"><code>{desc}</code></a> (manipulating <code>DESCRIPTION</code> files)</p></li>
<li><p><a href="https://withr.r-lib.org"><code>{withr}</code></a> (to manage package side effects by safely and temporarily modifying global states)</p></li>
<li><p><a href="https://pkgload.r-lib.org/"><code>{pkgload}</code></a> (to simulate the process of installing and loading a package)</p></li>
<li><p><a href="https://cran.r-project.org/package=pkgbuild"><code>{pkgbuild}</code></a> (to find tools needed to build packages)</p></li>
</ul>
</section>
<section id="package-configuration" class="level1">
<h1>Package configuration</h1>
<ul>
<li><p><a href="https://rstudio.github.io/config/"><code>{config}</code></a> (to manage environment specific configuration values)</p></li>
<li><p><a href="https://cran.r-project.org/package=dotenv"><code>{dotenv}</code></a> (to load environment variables from <code>.env</code> files)</p></li>
<li><p><a href="https://dgkf.github.io/options/"><code>{options}</code></a> (provides simple mechanisms for defining and interpreting package options)</p></li>
<li><p><a href="https://cran.r-project.org/package=potions"><code>{potions}</code></a> (to update and retrieve options, either in the workspace or during package development, without overwriting global options)</p></li>
</ul>
</section>
<section id="package-management-tools" class="level1">
<h1>Package management tools</h1>
<ul>
<li><a href="https://cran.r-project.org/package=pkgcache"><code>{pkgcache}</code></a> (to cache ‘CRAN’-like metadata and packages)</li>
</ul>
</section>
<section id="documentation" class="level1">
<h1>Documentation 📚</h1>
<section id="manual" class="level2">
<h2 class="anchored" data-anchor-id="manual">Manual</h2>
<ul>
<li><p><a href="https://roxygen2.r-lib.org"><code>{roxygen2}</code></a> (to generate R package documentation from inline R comments)</p></li>
<li><p><a href="https://cran.r-project.org/package=Rd2roxygen"><code>{Rd2roxygen}</code></a> (in case you inherit a project where documentation was not written using <code>{roxygen2}</code>)</p></li>
<li><p><a href="https://github.com/mlysy/rdoxygen"><code>{rdoxygen}</code></a> (to create Doxygen documentation for R package C++ code)</p></li>
<li><p><a href="https://github.com/anthonynorth/roxyglobals"><code>{roxyglobals}</code></a> (to generate global variables with <code>{roxygen2}</code> documentation)</p></li>
<li><p><a href="https://yonicd.github.io/sinew/"><code>{sinew}</code></a> (generate <code>{roxygen2}</code> skeletons)</p></li>
<li><p><a href="https://cran.r-project.org/package=roclang"><code>{roclang}</code></a> (helpers for diffusing content across function documentation)</p></li>
<li><p><a href="https://cran.r-project.org/package=Rdpack"><code>{Rdpack}</code></a> (for inserting references, figures, and evaluated examples in Rd docs)</p></li>
<li><p><a href="https://roxygen2md.r-lib.org"><code>{roxygen2md}</code></a> (to allow Markdown syntax usage in <code>{roxygen2}</code> documentation)</p></li>
<li><p><a href="https://github.com/Genentech/rd2markdown"><code>{rd2markdown}</code></a> (to convert <code>.Rd</code> package documentation files into markdown files)</p></li>
<li><p><a href="https://github.com/coolbutuseless/rd2list"><code>{rd2list}</code></a> (converts Rd docs to a human-readable list)</p></li>
<li><p><a href="https://cran.r-project.org/package=pasteAsComment"><code>{pasteAsComment}</code></a> (RStudio addin for pasting copied code as roxygen comment)</p></li>
<li><p><a href="https://github.com/csgillespie/roxygen2Comment"><code>roxygen2Comment</code></a> (Rstudio addin for adding and remove <code>{roxygen2}</code> comment)</p></li>
</ul>
</section>
<section id="math-rendering-in-htmlpdf-manual" class="level2">
<h2 class="anchored" data-anchor-id="math-rendering-in-htmlpdf-manual">Math rendering in HTML/PDF manual</h2>
<ul>
<li><p><a href="https://docs.ropensci.org/katex/"><code>{katex}</code></a> (to convert latex math expressions to HTML for use in package manual pages)</p></li>
<li><p><a href="https://cran.r-project.org/package=mathjaxr"><code>{mathjaxr}</code></a> (provides ‘MathJax’ and macros to enable its use within <code>Rd</code> files for rendering equations in the HTML help files)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=mathml"><code>{mathml}</code></a> (translates R expressions to ‘MathML’ or ‘MathJax’ so that they can be rendered in HTML manual and Shiny apps)</p></li>
</ul>
</section>
<section id="vignettes" class="level2">
<h2 class="anchored" data-anchor-id="vignettes">Vignettes</h2>
<ul>
<li><p><a href="https://yihui.org/knitr"><code>{knitr}</code></a> (a general-purpose tool for dynamic report generation to be used as a vignette builder for R package vignettes)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=rmarkdown"><code>{rmarkdown}</code></a> (to convert R Markdown documents to a variety of formats)</p></li>
<li><p><a href="https://quarto-dev.github.io/quarto-r/"><code>{quarto}</code></a> (provides R interface to frequently used operations in the Quarto CLI)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=R.rsp"><code>{R.rsp}</code></a> (for incorporating static and dynamic vignettes)</p></li>
<li><p><a href="https://dmurdoch.github.io/RmdConcord/"><code>{RmdConcord}</code></a> (to provide support for concordances in R Markdown files)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=prettydoc"><code>{prettydoc}</code></a> (creates lightweight yet pretty vignettes)</p></li>
<li><p><a href="https://github.com/indenkun/readme2vignette"><code>{readme2vignette}</code></a> (to convert README to vignette during package installation)</p></li>
</ul>
</section>
<section id="tutorials" class="level2">
<h2 class="anchored" data-anchor-id="tutorials">Tutorials</h2>
<ul>
<li><a href="https://rstudio.github.io/learnr/"><code>{learnr}</code></a> (to turn any R Markdown document into an interactive tutorial)</li>
</ul>
</section>
<section id="website" class="level2">
<h2 class="anchored" data-anchor-id="website">Website</h2>
<ul>
<li><p><a href="https://pkgdown.r-lib.org"><code>{pkgdown}</code></a> (static website for package documentation)</p></li>
<li><p><a href="https://github.com/ThinkR-open/gitdown/"><code>{gitdown}</code></a> (software changes as a gitbook)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=altdoc"><code>{altdoc}</code></a> (use <code>docute</code>, <code>docsify</code>, or <code>MkDocs</code> to create a static website for package documentation)</p></li>
</ul>
</section>
<section id="translation" class="level2">
<h2 class="anchored" data-anchor-id="translation">Translation</h2>
<ul>
<li><a href="https://github.com/MichaelChirico/potools/"><code>{potools}</code></a> (for translating messages and checking the “health” of the messaging corpus)</li>
</ul>
</section>
<section id="lifecycle" class="level2">
<h2 class="anchored" data-anchor-id="lifecycle">Lifecycle</h2>
<ul>
<li><a href="https://lifecycle.r-lib.org"><code>{lifecycle}</code></a> (to manage the life cycle of exported functions)</li>
</ul>
</section>
<section id="badges-and-stickers" class="level2">
<h2 class="anchored" data-anchor-id="badges-and-stickers">Badges and stickers</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=badger"><code>{badger}</code></a> (to query information and generate badges for use in <code>README</code>)</p></li>
<li><p><a href="https://cran.r-project.org/package=badgen"><code>{badgen}</code></a> (provides bindings to <a href="https://www.npmjs.com/package/badgen"><code>badgen</code></a> to generate beautiful ‘svg’ badges in R without internet access)</p></li>
<li><p><a href="https://cran.r-project.org/package=hexSticker"><code>{hexSticker}</code></a> (helper functions for creating reproducible hexagon sticker purely in R)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=hexFinder"><code>{hexFinder}</code></a> (to scavenge the web for possible hex logos for packages)</p></li>
<li><p><a href="https://github.com/mitchelloharawild/hexwall/"><code>hexwall</code></a> (to create a wall of hexstickers)</p></li>
</ul>
</section>
<section id="presentation" class="level2">
<h2 class="anchored" data-anchor-id="presentation">Presentation</h2>
<ul>
<li><a href="https://github.com/yihui/xaringan/"><code>{xaringan}</code></a> (an RMarkdown output format for <code>remark.js</code> slides)</li>
</ul>
</section>
<section id="book" class="level2">
<h2 class="anchored" data-anchor-id="book">Book</h2>
<ul>
<li><a href="https://CRAN.R-project.org/package=bookdown"><code>{bookdown}</code></a> (authoring framework for books and technical documents with R Markdown)</li>
</ul>
</section>
<section id="change-log-and-versioning" class="level2">
<h2 class="anchored" data-anchor-id="change-log-and-versioning">Change log and versioning</h2>
<ul>
<li><p><a href="https://fledge.cynkra.com/"><code>{fledge}</code></a> (to streamline the process of updating change logs and versioning R packages developed in git repositories)</p></li>
<li><p><a href="https://cran.r-project.org/package=newsmd"><code>{newsmd}</code></a> (utilities to add updates to the <code>NEWS.md</code> file)</p></li>
<li><p><a href="https://cran.r-project.org/package=autonewsmd"><code>{autonewsmd}</code></a> (to auto-generate change log using conventional commits)</p></li>
</ul>
</section>
</section>
<section id="documentation-quality" class="level1">
<h1>Documentation quality ✒️</h1>
<ul>
<li><p><a href="https://thisisnic.github.io/docreview/"><code>{docreview}</code></a> (to check quality of docs)</p></li>
<li><p><a href="https://docs.ropensci.org/spelling/"><code>{spelling}</code></a> (to check for spelling mistakes)</p></li>
<li><p><a href="https://github.com/jasdumas/gramr/"><code>{gramr}</code></a> (for grammar suggestions)</p></li>
</ul>
</section>
<section id="logging" class="level1">
<h1>Logging 📝</h1>
<ul>
<li><p><a href="https://cran.r-project.org/package=logger"><code>{logger}</code></a> (provides a flexible and extensible logging framework for R)</p></li>
<li><p><a href="https://cran.r-project.org/package=loggit"><code>{loggit}</code></a> (effortless newline-delimited JSON logger, with two primary log-writing interfaces)</p></li>
<li><p><a href="https://cran.r-project.org/package=log4r"><code>{log4r}</code></a> (logging in R based on the widely-emulated ‘log4j’ system and etymology)</p></li>
<li><p><a href="https://cran.r-project.org/package=lgr"><code>{lgr}</code></a> (a flexible, feature-rich yet light-weight logging framework based on ‘R6’ classes)</p></li>
<li><p><a href="https://cran.r-project.org/package=rsyslog"><code>{rsyslog}</code></a> (write messages to the ‘syslog’ system logger API)</p></li>
<li><p><a href="https://cran.r-project.org/package=logging"><code>{logging}</code></a> (pure R implementation of the ubiquitous ‘log4j’ package)</p></li>
<li><p><a href="https://cran.r-project.org/package=lumberjack"><code>{lumberjack}</code></a> (to log changes in data)</p></li>
</ul>
</section>
<section id="unit-testing" class="level1">
<h1>Unit testing 🧪</h1>
<section id="generic-r-packages" class="level2">
<h2 class="anchored" data-anchor-id="generic-r-packages">Generic R Packages</h2>
<ul>
<li><p><a href="https://testthat.r-lib.org"><code>{testthat}</code></a> (a testing framework for R that is easy to learn and use; also provides snapshot testing)</p></li>
<li><p><a href="https://cran.r-project.org/package=patrick"><code>{patrick}</code></a> (for parameterized unit testing with <code>{testthat}</code>)</p></li>
<li><p><a href="https://socialresearchcentre.github.io/testdat/"><code>{testdat}</code></a> (a family of functions and reporting tools focused on checking of data)</p></li>
<li><p><a href="https://cran.r-project.org/package=tinytest"><code>{tinytest}</code></a> (zero-dependency unit testing framework that installs tests with the package)</p></li>
<li><p><a href="https://github.com/vincentarelbundock/tinysnapshot"><code>{tinysnapshot}</code></a> (snapshots for unit tests using the <a href="https://cran.r-project.org/package=tinytest"><code>{tinytest}</code></a> framework)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=tinytest2JUnit"><code>{tinytest2JUnit}</code></a> (to convert <a href="https://cran.r-project.org/package=tinytest"><code>{tinytest}</code></a> output to JUnit XML needed by CI/CD)</p></li>
<li><p><a href="https://github.com/mllg/checkmate.tinytest"><code>{checkmate.tinytest}</code></a> (additional expectations for <code>{tinytest}</code> framework)</p></li>
<li><p><a href="https://cran.r-project.org/package=RUnit"><code>{RUnit}</code></a> (a standard unit testing framework, with additional code inspection and report generation tools)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=testit"><code>{testit}</code></a> (a simple package for testing R packages)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=realtest"><code>{realtest}</code></a> (a framework unit testing that distinguishes between expected, acceptable, current, fallback, ideal, or regressive behaviours)</p></li>
<li><p><a href="https://github.com/mikldk/roxytest/"><code>{roxytest}</code></a> (to inline <code>{testthat}</code> tests with <code>{roxygen2}</code>)</p></li>
<li><p><a href="https://hughjonesd.github.io/doctest/"><code>{doctest}</code></a> (to write <code>{testthat}</code> tests by adding <code>{roxygen2}</code> tags)</p></li>
<li><p><a href="https://rorynolan.github.io/exampletestr/"><code>{exampletestr}</code></a> (tests based on package examples)</p></li>
<li><p><a href="https://cran.r-project.org/package=roxut"><code>{roxut}</code></a> (to write the unit tests in the same file as the function)</p></li>
<li><p><a href="https://cran.r-project.org/package=unitizer"><code>{unitizer}</code></a> (simplifies regression tests by comparing objects produced by test code with earlier versions of those same objects)</p></li>
<li><p><a href="https://github.com/hedgehogqa/r-hedgehog"><code>{r-hedgehog}</code></a> (property based testing)</p></li>
<li><p><a href="https://docs.ropensci.org/autotest/"><code>{autotest}</code></a> (automatic mutation testing of R packages)</p></li>
<li><p><a href="https://jakubsob.github.io/cucumber/"><code>{cucumber}</code></a> (an implementation of the <a href="https://cucumber.io/">Cucumber testing framework</a> in R)</p></li>
<li><p><a href="https://armcn.github.io/quickcheck/"><code>{quickcheck}</code></a> (provides property-based testing in <code>{testthat}</code> framework)</p></li>
</ul>
</section>
<section id="webdatabase-applications" class="level2">
<h2 class="anchored" data-anchor-id="webdatabase-applications">Web/database applications</h2>
<ul>
<li><p><a href="https://enpiar.com/r/httptest/"><code>{httptest}</code></a>/<a href="https://enpiar.com/httptest2/"><code>{httptest2}</code></a> (a test environment for HTTP requests in R)</p></li>
<li><p><a href="https://webfakes.r-lib.org/"><code>{webfakes}</code></a> (to fake web apps for HTTP testing)</p></li>
<li><p><a href="https://github.com/ropensci/vcr"><code>{vcr}</code></a> (to record HTTP requests and responses on disk and replay them for the unit tests)</p></li>
<li><p><a href="https://dittodb.jonkeane.com/"><code>{dittodb}</code></a> (makes testing against databases easy)</p></li>
</ul>
</section>
<section id="visual-regression-testing" class="level2">
<h2 class="anchored" data-anchor-id="visual-regression-testing">Visual regression testing</h2>
<ul>
<li><p><a href="https://vdiffr.r-lib.org"><code>{vdiffr}</code></a> (for visual regression testing with <code>{testthat}</code>)</p></li>
<li><p><a href="https://cran.r-project.org/package=gdiff"><code>{gdiff}</code></a> (for performing graphical difference different package or R versions)</p></li>
</ul>
</section>
<section id="mock-testing" class="level2">
<h2 class="anchored" data-anchor-id="mock-testing">Mock testing</h2>
<ul>
<li><p><a href="https://nbenn.github.io/mockthat/"><code>{mockthat}</code></a> (provides a way to mock package function for unit testing, while coping with <code>S3</code> dispatch)</p></li>
<li><p><a href="https://krlmlr.github.io/mockr/"><code>{mockr}</code></a> (provides a way to mock package function for unit testing)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=mockery"><code>{mockery}</code></a> (provides a way to mock package function for unit testing and can be used with any testing framework)</p></li>
</ul>
</section>
<section id="mutation-testing" class="level2">
<h2 class="anchored" data-anchor-id="mutation-testing">Mutation testing</h2>
<ul>
<li><a href="https://github.com/sckott/mutant"><code>{mutant}</code></a> (mutation testing for R)</li>
</ul>
</section>
<section id="markdown-documents" class="level2">
<h2 class="anchored" data-anchor-id="markdown-documents">Markdown documents</h2>
<ul>
<li><a href="https://cderv.github.io/pandoc/"><code>{pandoc}</code></a> (to check Markdown documents across various version of <a href="https://pandoc.org">Pandoc</a>)</li>
</ul>
</section>
<section id="shiny-applications" class="level2">
<h2 class="anchored" data-anchor-id="shiny-applications">Shiny applications</h2>
<ul>
<li><p><a href="https://rstudio.github.io/shinytest/"><code>{shinytest}</code></a> (testing Shiny apps)</p></li>
<li><p><a href="https://rstudio.github.io/shinytest2/"><code>{shinytest2}</code></a> (testing Shiny apps using a headless Chromium web browser)</p></li>
<li><p><a href="https://rstudio.github.io/shinyloadtest/"><code>{shinyloadtest}</code></a> (to load test deployed Shiny apps)</p></li>
</ul>
</section>
<section id="helpers-for-testing-frameworks" class="level2">
<h2 class="anchored" data-anchor-id="helpers-for-testing-frameworks">Helpers for testing frameworks</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=testthis"><code>{testthis}</code></a> (RStudio addins for working with files that contain tests)</p></li>
<li><p><a href="https://github.com/LudvigOlsen/xpectr/"><code>{xpectr}</code></a> (builds unit tests with the <code>{testthat}</code> package by providing tools for generating expectations)</p></li>
<li><p><a href="https://github.com/ThinkR-open/testdown/"><code>{testdown}</code></a> (turn <code>{testthat}</code> results into a <code>{bookdown}</code> project)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=ttdo"><code>{ttdo}</code></a> (provides ‘diff’-style comparison of R objects for <code>{tinytest}</code> framework)</p></li>
</ul>
</section>
</section>
<section id="codedocument-formatting" class="level1">
<h1>Code/Document Formatting 🧽</h1>
<ul>
<li><p><a href="https://styler.r-lib.org"><code>{styler}</code></a> (to format code according to a style guide)</p></li>
<li><p><a href="https://github.com/lorenzwalthert/stylermd/"><code>{stylermd}</code></a> (to format text in Markdown documents)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=formatR"><code>{formatR}</code></a> (to format R source code)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=RFormatter"><code>{RFormatter}</code></a> (extension of <code>{formatR}</code> with slightly improved heuristics)</p></li>
<li><p><a href="https://github.com/gadenbuie/grkstyle/"><code>{grkstyle}</code></a> (extension package for <code>{styler}</code> that supports author’s personal code style preferences)</p></li>
<li><p><a href="https://github.com/lionel-/codegrip/"><code>{codegrip}</code></a> (addin for RStudio IDE to reshape R code and navigate across syntactic constructs)</p></li>
<li><p><a href="https://github.com/Bioconductor/BiocStyle/"><code>{BiocStyle}</code></a> (provides standard formatting styles for Bioconductor PDF and HTML documents)</p></li>
<li><p><a href="https://github.com/seasmith/AlignAssign"><code>AlignAssign</code></a> (RStudio addin that aligns the assignment operators within a highlighted area)</p></li>
<li><p><a href="https://tazinho.github.io/snakecase/"><code>{snakecase}</code></a> (helpful for having consistent case while naming objects in the package)</p></li>
<li><p><a href="https://indrajeetpatil.github.io/dotInternals/"><code>{dotInternals}</code></a> (to distinguish non-exported package functions by prepending their names with a dot)</p></li>
</ul>
</section>
<section id="code-analysis" class="level1">
<h1>Code analysis 🗂⏱</h1>
<section id="general" class="level2">
<h2 class="anchored" data-anchor-id="general">General</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=codetools"><code>{codetools}</code></a> (code analysis tools for R)</p></li>
<li><p><a href="https://docs.ropensci.org/goodpractice/"><code>{goodpractice}</code></a> (Swiss army knife for good practices)</p></li>
<li><p><a href="https://github.com/jumpingrivers/inteRgrate/"><code>{inteRgrate}</code></a> (provides an opinionated set of rules for R package development)</p></li>
<li><p><a href="https://inbo.github.io/checklist/"><code>{checklist}</code></a> (to provide an elaborate and strict set of checks for R packages and R code)</p></li>
<li><p><a href="https://docs.ropensci.org/pkgcheck/"><code>{pkgcheck}</code></a> (checks if package follows good practices recommended for packages in the <a href="https://ropensci.org/"><code>rOpenSci</code></a> ecosystem)</p></li>
<li><p><a href="https://docs.ropensci.org/pkgstats/">{pkgstats}</a> (a static code analysis tool)</p></li>
<li><p><a href="https://github.com/kalibera/rchk/"><code>{rchk}</code></a> (provides several bug-finding tools that look for memory protection errors in C source code using R API)</p></li>
<li><p><a href="https://cran.r-project.org/package=sourcetools"><code>{sourcetools}</code></a> (tools for reading, tokenizing, and parsing R code)</p></li>
<li><p><a href="https://lorenzwalthert.github.io/precommit/"><code>{precommit}</code></a> (git hooks for common tasks like formatting files, spell checking, etc.)</p></li>
</ul>
</section>
<section id="code-review" class="level2">
<h2 class="anchored" data-anchor-id="code-review">Code review</h2>
<ul>
<li><a href="https://CRAN.R-project.org/package=PaRe"><code>{PaRe}</code></a> (reviews other packages during code review by looking at their dependencies, code style, code complexity, and how internally defined functions interact with one another)</li>
</ul>
</section>
<section id="code-coverage" class="level2">
<h2 class="anchored" data-anchor-id="code-coverage">Code coverage</h2>
<ul>
<li><p><a href="https://covr.r-lib.org"><code>{covr}</code></a> (to compute code coverage)</p></li>
<li><p><a href="https://yonicd.github.io/covrpage/"><code>{covrpage}</code></a> (to include summary <code>README</code> of code coverage and more detailed information about tests)</p></li>
<li><p><a href="https://github.com/Genentech/covtracer/"><code>{covtracer}</code></a> (provides tools for contextualizing tests)</p></li>
</ul>
</section>
<section id="code-quality" class="level2">
<h2 class="anchored" data-anchor-id="code-quality">Code quality</h2>
<ul>
<li><p><a href="https://github.com/r-lib/lintr/"><code>{lintr}</code></a> (static code analysis)</p></li>
<li><p><a href="https://flint.etiennebacher.com/"><code>{flint}</code></a> (to fix lints found by <code>{lintr}</code>)</p></li>
<li><p><a href="https://openpharma.github.io/roxylint/index.html"><code>{roxylint}</code></a> (to lint <code>{roxygen2}</code>-generated documentation)</p></li>
<li><p><a href="https://jorischau.github.io/checkglobals/index.html"><code>{checkglobals}</code></a> (to check R-packages for globals and imports)</p></li>
<li><p><a href="https://github.com/duncantl/CodeDepends"><code>{CodeDepends}</code></a> (analysis of R code for reproducible research and code view)</p></li>
<li><p><a href="https://cran.r-project.org/package=adaptalint"><code>{adaptalint}</code></a> (infer code style from one package and use it to check another)</p></li>
<li><p><a href="https://appsilon.github.io/box.linters/"><code>{box.linters}</code></a> (linters for <a href="https://klmr.me/box/"><code>{box}</code></a> modules)</p></li>
<li><p><a href="https://cran.r-project.org/package=roger"><code>{roger}</code></a> (provides tools for grading the coding style and documentation of R scripts)</p></li>
<li><p><a href="https://cran.r-project.org/package=cleanr"><code>{cleanr}</code></a> (tests code for some of the most common code layout flaws)</p></li>
</ul>
</section>
<section id="code-complexity" class="level2">
<h2 class="anchored" data-anchor-id="code-complexity">Code complexity</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=cyclocomp"><code>{cyclocomp}</code></a> (to index the complexity of a function)</p></li>
<li><p><a href="https://gitlab.com/doliv071/pkggraphr"><code>{pkgGraphR}</code></a> (to visualize the relationship between functions in an R package)</p></li>
</ul>
</section>
<section id="code-similarity" class="level2">
<h2 class="anchored" data-anchor-id="code-similarity">Code similarity</h2>
<ul>
<li><p><a href="https://github.com/russHyde/dupree/"><code>{dupree}</code></a> (identifies code blocks that have a high level of similarity within a set of R files)</p></li>
<li><p><a href="https://cran.r-project.org/package=rscc"><code>{rscc}</code></a> (provides source code similarity evaluation by variable/function names)</p></li>
<li><p><a href="https://cran.r-project.org/package=SimilaR"><code>{SimilaR}</code></a> (quantifies the similarity of the code-base of R functions by means of program dependence graphs)</p></li>
</ul>
</section>
<section id="compiled-code" class="level2">
<h2 class="anchored" data-anchor-id="compiled-code">Compiled code</h2>
<ul>
<li><p><a href="https://memtools.r-lib.org/"><code>{memtools}</code></a> (to solve memory leaks)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=sanitizers"><code>{sanitizers}</code></a> (to test for memory violations and other undefined behaviour)</p></li>
<li><p><a href="https://cran.r-project.org/package=cppcheckR"><code>{cppcheckR}</code></a> (to check <code>C</code> and <code>C++</code> code using <a href="https://cppcheck.sourceforge.io/"><code>Cppcheck</code></a>)</p></li>
</ul>
</section>
<section id="javascript-code" class="level2">
<h2 class="anchored" data-anchor-id="javascript-code">JavaScript code</h2>
<ul>
<li><a href="https://cran.r-project.org/package=jshintr"><code>{jshintr}</code></a> (to run <a href="https://jshint.com/about/">JSHint</a> for static code analysis for JavaScript code included in the package)</li>
</ul>
</section>
<section id="lines-of-code" class="level2">
<h2 class="anchored" data-anchor-id="lines-of-code">Lines of code</h2>
<ul>
<li><a href="https://github.com/hrbrmstr/cloc/"><code>{cloc}</code></a> (counts blank lines, comment lines, and physical lines of source code in source files)</li>
</ul>
</section>
</section>
<section id="refactoring" class="level1">
<h1>Refactoring</h1>
<ul>
<li><a href="https://github.com/moodymudskipper/refactor/"><code>{refactor}</code></a> (to check speed and performance of both the original and refactored version of code)</li>
</ul>
</section>
<section id="code-performance" class="level1">
<h1>Code performance ⏱️</h1>
<section id="benchmarking" class="level2">
<h2 class="anchored" data-anchor-id="benchmarking">Benchmarking</h2>
<ul>
<li><p><a href="https://bench.r-lib.org/"><code>{bench}</code></a> (provides high precision benchmarks for R expressions)</p></li>
<li><p><a href="https://cran.r-project.org/package=microbenchmark"><code>{microbenchmark}</code></a> (infrastructure to accurately measure and compare the execution time of R expressions)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=tictoc"><code>{tictoc}</code></a> (functions for timing R scripts)</p></li>
<li><p><a href="https://lorenzwalthert.github.io/touchstone/"><code>{touchstone}</code></a> (to benchmark pull requests)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=benchmarkme"><code>{benchmarkme}</code></a> (to crowd-source system benchmarking)</p></li>
<li><p><a href="https://github.com/CollinErickson/comparer"><code>{comparer}</code></a> (to compare the results of different code chunks)</p></li>
</ul>
</section>
<section id="profiling" class="level2">
<h2 class="anchored" data-anchor-id="profiling">Profiling</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=profvis"><code>{profvis}</code></a> (to profile and visualize profiling data)</p></li>
<li><p><a href="https://r-prof.github.io/proffer/"><code>{proffer}</code></a> (to create friendlier, faster visualizations for profiling data)</p></li>
<li><p><a href="https://r-prof.github.io/jointprof/"><code>{jointprof}</code></a> (to profile packages with native code in C, C++, Fortran, etc.)</p></li>
<li><p><a href="https://github.com/atheriel/xrprof"><code>{xrprof}</code></a> (an external sampling profiler)</p></li>
</ul>
</section>
</section>
<section id="reproducible-environments" class="level1">
<h1>Reproducible Environments 🌐</h1>
<section id="package-management" class="level2">
<h2 class="anchored" data-anchor-id="package-management">Package management</h2>
<ul>
<li><p><a href="https://rstudio.github.io/renv/"><code>{renv}</code></a> (to create project-local environments)</p></li>
<li><p><a href="https://cran.r-project.org/package=rix"><code>{rix}</code></a> (to create reproducible data science environments using the Nix package manager)</p></li>
<li><p><a href="https://cran4linux.github.io/bspm/index.html"><code>{bspm}</code></a> (to enable binary package installations via Linux distribution’s package manager)</p></li>
<li><p><a href="https://cran4linux.github.io/rspm/"><code>{rspm}</code></a> (to access <a href="https://packagemanager.posit.co/client/">Posit Public Package Manager</a> for binary package installations on Linux)</p></li>
<li><p><a href="https://groundhogr.com/"><code>{groundhogr}</code></a> (to load packages and their dependencies as available on chosen date on CRAN)</p></li>
</ul>
</section>
<section id="containerization" class="level2">
<h2 class="anchored" data-anchor-id="containerization">Containerization 🛍</h2>
<ul>
<li><p><a href="https://github.com/o2r-project/containerit"><code>{containerit}</code></a> (to package R script/session/workspace and all dependencies as a <code>Docker</code> container by generating a suitable <code>Dockerfile</code>)</p></li>
<li><p><a href="https://github.com/ThinkR-open/dockerfiler"><code>{dockerfiler}</code></a> (to generate <code>Dockerfile</code> for R projects)</p></li>
<li><p><a href="https://tidylab.github.io/usethat/"><code>{usethat}</code></a> (to automate analytic project setup tasks)</p></li>
</ul>
</section>
</section>
<section id="dependency-management" class="level1">
<h1>Dependency Management ⚖️</h1>
<ul>
<li><p><a href="https://cran.r-project.org/package=pkgdepends"><code>{pkgdepends}</code></a> (to find recursive dependencies of from various sources)</p></li>
<li><p><a href="https://cran.r-project.org/package=deepdep"><code>{deepdep}</code></a> (to visualize and explore package dependencies)</p></li>
<li><p><a href="https://github.com/r-lib/itdepends/"><code>{itdepends}</code></a> (to assess usage, measure weights, visualize proportions, and assist removal of dependencies)</p></li>
<li><p><a href="https://github.com/datastorm-open/DependenciesGraphs/"><code>{DependenciesGraphs}</code></a> (to visualize package dependencies)</p></li>
<li><p><a href="https://github.com/darwin-eu-dev/DependencyReviewer/"><code>{DependencyReviewer}</code></a> (to investigate packages during code review by looking at their dependencies)</p></li>
<li><p><a href="https://hub.analythium.io/deps/"><code>{deps}</code></a> (to manage source code dependencies by decorating R code with roxygen-style comments)</p></li>
<li><p><a href="https://uptake.github.io/pkgnet/"><code>{pkgnet}</code></a> (to build a graph representation of a package and its dependencies)</p></li>
<li><p><a href="https://cran.r-project.org/package=functiondepends"><code>{functiondepends}</code></a> (to find functions in an unstructured directory and explore their dependencies)</p></li>
<li><p><a href="https://cran.r-project.org/package=pkgndep"><code>{pkgndep}</code></a> (checks the heaviness of the packages used)</p></li>
<li><p><a href="https://github.com/ThinkR-open/attachment/"><code>{attachment}</code></a> (to deal with package dependencies during package development)</p></li>
</ul>
</section>
<section id="cranbioconductor-checks" class="level1">
<h1>CRAN/Bioconductor checks 📬</h1>
<ul>
<li><p><a href="https://rcmdcheck.r-lib.org/"><code>{rcmdcheck}</code></a> (to run <code>R CMD check</code> form R programmatically)</p></li>
<li><p><a href="https://github.com/Bioconductor/BiocCheck/"><code>{BiocCheck}</code></a> (to run Bioconductor-specific package checks)</p></li>
<li><p><a href="https://cran.r-project.org/package=rhub"><code>{rhub}</code></a> (to run <code>R CMD check</code> on CRAN architectures)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=checked"><code>{checked}</code></a> (systematically run <code>R CMD check</code> against multiple packages)</p></li>
<li><p><a href="https://thinkr-open.github.io/checkhelper/"><code>{checkhelper}</code></a> (to help avoid problems with CRAN submissions)</p></li>
<li><p><a href="https://github.com/JosiahParry/extrachecks/"><code>{extrachecks}</code></a> (to run some additional CRAN checks)</p></li>
<li><p><a href="https://cran.r-project.org/package=foghorn"><code>{foghorn}</code></a> (to check for results and submission portal status)</p></li>
<li><p><a href="https://github.com/r-lib/urlchecker/"><code>{urlchecker}</code></a> (to checks for URL rot)</p></li>
</ul>
</section>
<section id="usage" class="level1">
<h1>Usage 🙈</h1>
<ul>
<li><p><a href="https://r-hub.github.io/cranlogs/"><code>{cranlogs}</code></a> (for computing CRAN download counts)</p></li>
<li><p><a href="https://github.com/lindbrook/packageRank/"><code>{packageRank}</code></a> (for visualizing CRAN download counts)</p></li>
<li><p><a href="https://guangchuangyu.github.io/dlstats/"><code>{dlstats}</code></a> (provides download statistics for packages)</p></li>
</ul>
</section>
<section id="cicd" class="level1">
<h1>CI/CD 📟</h1>
<p>CI/CD: continuous integration and either continuous delivery or continuous deployment</p>
<ul>
<li><p><a href="https://github.com/r-lib/actions/"><code>actions</code></a> (provides <a href="https://github.com/features/actions">GitHub Actions</a> relevant for R)</p></li>
<li><p><a href="https://github.com/r-lib/gha"><code>{gha}</code></a> (Useful functions for GitHub Actions)</p></li>
<li><p><a href="https://github.com/krlmlr/actions-sync/"><code>actions-sync</code></a> (to manage GitHub Actions workflows across repositories)</p></li>
<li><p><a href="https://github.com/neurogenomics/rworkflows/"><code>{rworkflows}</code></a> (GitHub Actions to automates testing, documentation website building, and containerized deployment)</p></li>
<li><p><a href="https://github.com/Azure/AzureR/"><code>AzureR</code></a> (a family of packages for working with <a href="https://azure.microsoft.com/en-gb/">Azure</a> from R)</p></li>
<li><p><a href="https://github.com/krlmlr/r-appveyor/"><code>r-appveyor</code></a> (for <a href="https://www.appveyor.com/">AppVeyor</a>)</p></li>
<li><p><a href="https://docs.ropensci.org/tic/"><code>{tic}</code></a> (for <a href="https://circleci.com/">Circle CI</a> and <a href="https://github.com/features/actions/">GitHub Actions</a>)</p></li>
<li><p><a href="https://docs.ropensci.org/circle/"><code>{circle}</code></a> (for <a href="https://circleci.com/">Circle CI</a>)</p></li>
<li><p><a href="https://docs.ropensci.org/jenkins/"><code>{jenkins}</code></a> (for <a href="https://www.jenkins.io/">Jenkins CI</a>)</p></li>
<li><p><a href="https://github.com/bnosac/cronR/"><code>{cronR}</code></a> (to schedule R scripts/processes with the cron scheduler)</p></li>
</ul>
</section>
<section id="securityprivacy" class="level1">
<h1>Security/Privacy 👮</h1>
<ul>
<li><p><a href="https://cran.r-project.org/package=gpg"><code>{gpg}</code></a> (GNU privacy guard for R)</p></li>
<li><p><a href="https://sonatype-nexus-community.github.io/oysteR/"><code>{oysteR}</code></a> (to secure package against insecure dependencies)</p></li>
</ul>
</section>
<section id="build-systems" class="level1">
<h1>Build systems</h1>
<ul>
<li><a href="https://cran.r-project.org/package=fakemake"><code>{fakemake}</code></a> (to mock Unix Make build system in case it is unavailable)</li>
</ul>
</section>
<section id="debugging" class="level1">
<h1>Debugging 🔭</h1>
<ul>
<li><p><a href="https://github.com/r-lib/debugme/"><code>{debugme}</code></a> (provides helpers to specify debug messages as special string constants, and control debugging of packages via environment variables)</p></li>
<li><p><a href="https://cran.r-project.org/package=debugr"><code>{debugr}</code></a> (tools to print out the value of R objects/expressions while running an R script)</p></li>
<li><p><a href="https://r-prof.github.io/winch/"><code>{winch}</code></a> (provides stack traces for call chains that cross between R and C/C++ function calls)</p></li>
<li><p><a href="https://moodymudskipper.github.io/flow/"><code>{flow}</code></a> (to visualize as flow diagrams the logic of functions, expressions, or scripts, which can ease debugging)</p></li>
<li><p><a href="https://github.com/moodymudskipper/boomer/"><code>{boomer}</code></a> (provides debugging tools to inspect the intermediate steps of a call)</p></li>
</ul>
</section>
<section id="input-validation" class="level1">
<h1>Input validation 🔬</h1>
<section id="function-argument-validation" class="level2">
<h2 class="anchored" data-anchor-id="function-argument-validation">Function argument validation</h2>
<ul>
<li><p><a href="https://poissonconsulting.github.io/chk/"><code>{chk}</code></a> (to check user-supplied function arguments)</p></li>
<li><p><a href="https://mllg.github.io/checkmate/"><code>{checkmate}</code></a> (fast and versatile argument checks)</p></li>
<li><p><a href="https://cran.r-project.org/package=assertthat"><code>{assertthat}</code></a> (to declare the pre and post conditions that you code should satisfy and to produce friendly error messages)</p></li>
<li><p><a href="https://bitbucket.org/richierocks/assertive/src/master/"><code>{assertive}</code></a> (provides readable check functions to ensure code integrity)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=valaddin"><code>{valaddin}</code></a> (functional input validation)</p></li>
<li><p><a href="https://github.com/lrberge/dreamerr/"><code>{dreamerr}</code></a> (to check the arguments passed to a function and to offer informative error messages)</p></li>
<li><p><a href="https://flujoo.github.io/erify/"><code>{erify}</code></a> (to check arguments and generate readable error messages)</p></li>
</ul>
</section>
<section id="data-validation" class="level2">
<h2 class="anchored" data-anchor-id="data-validation">Data validation</h2>
<ul>
<li><p><a href="https://docs.ropensci.org/assertr/"><code>{assertr}</code></a> (to verify assumptions about data early)</p></li>
<li><p><a href="https://cran.r-project.org/package=ensurer"><code>{ensurer}</code></a> (to ensure values are as expected at runtime)</p></li>
<li><p><a href="https://github.com/data-cleaning/validate/"><code>{validate}</code></a> (to check whether data lives up to expectations based on the domain-specific knowledge)</p></li>
</ul>
</section>
</section>
<section id="package-metadata" class="level1">
<h1>Package metadata 🖨</h1>
<ul>
<li><p><a href="https://docs.ropensci.org/codemetar/"><code>{codemetar}</code></a> (provides utilities to generate, parse, and modify <code>codemeta.jsonld</code> files automatically for R packages), or <a href="https://github.com/cboettig/codemeta/"><code>{codemeta}</code></a> (a leaner version of <code>{codemetar}</code>)</p></li>
<li><p><a href="https://docs.ropensci.org/cffr/"><code>{cffr}</code></a> (provides utilities to generate, parse, modify and validate <code>CITATION.cff</code> files automatically for R packages)</p></li>
<li><p><a href="https://github.com/pik-piam/citation"><code>{citation}</code></a> (creates <code>CITATION.cff</code> from R package metadata)</p></li>
<li><p><a href="https://github.com/r-lib/pkgapi/"><code>{pkgapi}</code></a> (to create the map of function calls in a package)</p></li>
<li><p><a href="https://pharmar.github.io/riskmetric/"><code>{riskmetric}</code></a> (provides a collection of risk metrics to evaluate the quality of R packages)</p></li>
<li><p><a href="https://github.com/sfirke/packagemetrics/"><code>{packagemetrics}</code></a> (for comparing among packages)</p></li>
<li><p><a href="https://martinctc.github.io/devtoolbox/"><code>{devtoolbox}</code></a> (to create a summary report for R package and to extract dependency statistics in a tidy data frame)</p></li>
<li><p><a href="https://rich-iannone.github.io/pkgattrs/"><code>{pkgattrs}</code></a> (useful for getting information on the contents of any R package)</p></li>
<li><p><a href="https://github.com/yonicd/foreman/"><code>{foreman}</code></a> (for unpacking, interrogating and subsetting R packages)</p></li>
<li><p><a href="https://sessioninfo.r-lib.org/"><code>{sessioninfo}</code></a> (to include R session information)</p></li>
</ul>
</section>
<section id="reverse-dependency-checks" class="level1">
<h1>Reverse dependency checks 📡⚰️</h1>
<ul>
<li><p><a href="https://revdepcheck.r-lib.org/"><code>{revdepcheck}</code></a> (for automated, isolated, reverse dependency checking)</p></li>
<li><p><a href="https://yihui.org/xfun/"><code>{xfun}</code></a> (specifically, <code>xfun::rev_check()</code>)</p></li>
</ul>
</section>
<section id="gratitude" class="level1">
<h1>Gratitude 🙏💌</h1>
<p>To thank the contributors or maintainers of packages you rely on.</p>
<ul>
<li><p><a href="https://cran.r-project.org/package=thankr"><code>{thankr}</code></a> (to find out who maintains the packages you are using)</p></li>
<li><p><a href="https://docs.ropensci.org/allcontributors/"><code>{allcontributors}</code></a> (to help acknowledge all contributions)</p></li>
</ul>
</section>
<section id="integration-with-other-languages" class="level1">
<h1>Integration with other languages 🔗</h1>
<section id="c" class="level2">
<h2 class="anchored" data-anchor-id="c">C++</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=Rcpp"><code>{Rcpp}</code></a></p></li>
<li><p><a href="https://cpp11.r-lib.org"><code>{cpp11}</code></a></p></li>
</ul>
</section>
<section id="fortran" class="level2">
<h2 class="anchored" data-anchor-id="fortran">Fortran</h2>
<ul>
<li><a href="https://github.com/t-kalinowski/RFI"><code>{RFI}</code></a></li>
</ul>
</section>
<section id="python" class="level2">
<h2 class="anchored" data-anchor-id="python">Python</h2>
<ul>
<li><a href="https://cran.r-project.org/package=reticulate"><code>{reticulate}</code></a></li>
</ul>
</section>
<section id="rust" class="level2">
<h2 class="anchored" data-anchor-id="rust">Rust</h2>
<ul>
<li><p><a href="https://cran.r-project.org/package=rextendr"><code>{rextendr}</code></a></p></li>
<li><p><a href="https://cran.r-project.org/package=cargo"><code>{cargo}</code></a></p></li>
<li><p><a href="https://github.com/r-rust/hellorust"><code>{hellorust}</code></a></p></li>
</ul>
</section>
<section id="net-framework" class="level2">
<h2 class="anchored" data-anchor-id="net-framework">.NET Framework</h2>
<ul>
<li><a href="https://github.com/rdotnet/rClr/"><code>{rClr}</code></a></li>
</ul>
</section>
<section id="javascripthtmlcss" class="level2">
<h2 class="anchored" data-anchor-id="javascripthtmlcss">JavaScript/HTML/CSS</h2>
<ul>
<li><a href="https://CRAN.R-project.org/package=htmltools"><code>{htmltools}</code></a></li>
<li><a href="https://CRAN.R-project.org/package=packer"><code>{packer}</code></a></li>
</ul>
</section>
<section id="julia" class="level2">
<h2 class="anchored" data-anchor-id="julia">Julia</h2>
<ul>
<li><a href="https://non-contradiction.github.io/JuliaCall/"><code>{JuliaCall}</code></a></li>
</ul>
</section>
</section>
<section id="upkeep" class="level1">
<h1>Upkeep 🧹</h1>
<ul>
<li><a href="https://github.com/dokato/todor/"><code>{TODOr}</code></a> (RStudio addin to list things that you need to do or change)</li>
</ul>
</section>
<section id="sundry" class="level1">
<h1>Sundry 🗒</h1>
<ul>
<li><p><a href="https://CRAN.R-project.org/package=lazyData"><code>{lazyData}</code></a> (supplies a lazy data loading for packages with datasets that do not provide <code>LazyData: true</code>)</p></li>
<li><p><a href="https://merck.github.io/pkglite/"><code>{pkglite}</code></a> (tools to represent and exchange R package source code as text files)</p></li>
<li><p><a href="https://github.com/JamesHWade/gpttools/"><code>{gpttools}</code></a> (RStudio addin that allows using <a href="https://en.wikipedia.org/wiki/ChatGPT">chatGPT</a> to automate writing documentation, tests, etc.)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=rfold"><code>{rfold}</code></a> (to work with many R folders within an R package)</p></li>
<li><p><a href="https://github.com/the-y-company/many"><code>{many}</code></a> (to create R packages from many directories)</p></li>
<li><p><a href="https://github.com/dreamRs/prefixer/"><code>{prefixer}</code></a> (prefix function with their namespace )</p></li>
<li><p><a href="https://hughjonesd.github.io/onetime/"><code>{onetime}</code></a> (for package authors to run code only once for a given user on a given computer)</p></li>
<li><p><a href="https://rstudio.github.io/rstudioapi/"><code>{rstudioapi}</code></a> (to conditionally access the RStudio API from CRAN packages)</p></li>
<li><p><a href="https://hughjonesd.shinyapps.io/rcheology/"><code>{rcheology}</code></a> (to access data on base packages for previous versions of R)</p></li>
<li><p><a href="https://cran.r-project.org/package=gitignore"><code>{gitignore}</code></a> (to fetch gitignore templates)</p></li>
<li><p><a href="https://cran.r-project.org/package=DIZutils"><code>{DIZutils}</code></a> (helpers for packages dealing with database connections)</p></li>
<li><p><a href="https://CRAN.R-project.org/package=dang"><code>{dang}</code></a> (Miscellaneous utilities for CRAN packages)</p></li>
</ul>
</section>
<section id="session-information" class="level1">
<h1>Session information</h1>
<div class="cell" data-details.summary="Session details">
<details closed="">
<summary>
<span title="Click to Open"> Session details </span>
</summary>
<div class="sourceCode" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>─ Session info ───────────────────────────────────────────────────────────────</span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a> setting value</span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a> version R version <span class="dv">4</span>.<span class="fl">4.1</span> (<span class="dv">2024-06-14</span>)</span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a> os Ubuntu <span class="dv">22</span>.<span class="fl">04.5</span> LTS</span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a> system x86_64, linux<span class="sc">-</span>gnu</span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a> hostname fv<span class="sc">-</span>az695<span class="dv">-575</span></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a> ui X11</span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a> <span class="fu">language</span> (EN)</span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a> collate C.UTF<span class="dv">-8</span></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a> ctype C.UTF<span class="dv">-8</span></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a> tz UTC</span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a> date <span class="dv">2024-10-13</span></span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a> pandoc <span class="fl">3.5</span> <span class="sc">@</span> <span class="er">/</span>opt<span class="sc">/</span>hostedtoolcache<span class="sc">/</span>pandoc<span class="sc">/</span><span class="fl">3.5</span><span class="sc">/</span>x64<span class="sc">/</span> (via rmarkdown)</span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a> quarto <span class="dv">1</span>.<span class="fl">6.25</span> <span class="sc">@</span> <span class="er">/</span>usr<span class="sc">/</span>local<span class="sc">/</span>bin<span class="sc">/</span>quarto</span>
<span id="cb1-16"><a href="#cb1-16" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a>─ Packages ───────────────────────────────────────────────────────────────────</span>
<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a> package <span class="sc">*</span> version <span class="fu">date</span> (UTC) lib source</span>
<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a> base <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a> cli <span class="dv">3</span>.<span class="fl">6.3</span> <span class="dv">2024-06-21</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-21"><a href="#cb1-21" aria-hidden="true" tabindex="-1"></a> clipr <span class="dv">0</span>.<span class="fl">8.0</span> <span class="dv">2022-02-22</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-22"><a href="#cb1-22" aria-hidden="true" tabindex="-1"></a> compiler <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-23"><a href="#cb1-23" aria-hidden="true" tabindex="-1"></a> datasets <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-24"><a href="#cb1-24" aria-hidden="true" tabindex="-1"></a> desc <span class="dv">1</span>.<span class="fl">4.3</span> <span class="dv">2023-12-10</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-25"><a href="#cb1-25" aria-hidden="true" tabindex="-1"></a> details <span class="sc">*</span> <span class="dv">0</span>.<span class="fl">3.0</span> <span class="dv">2022-03-27</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-26"><a href="#cb1-26" aria-hidden="true" tabindex="-1"></a> digest <span class="dv">0</span>.<span class="fl">6.37</span> <span class="dv">2024-08-19</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-27"><a href="#cb1-27" aria-hidden="true" tabindex="-1"></a> evaluate <span class="dv">1</span>.<span class="fl">0.1</span> <span class="dv">2024-10-10</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-28"><a href="#cb1-28" aria-hidden="true" tabindex="-1"></a> fastmap <span class="dv">1</span>.<span class="fl">2.0</span> <span class="dv">2024-05-15</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-29"><a href="#cb1-29" aria-hidden="true" tabindex="-1"></a> graphics <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-30"><a href="#cb1-30" aria-hidden="true" tabindex="-1"></a> grDevices <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-31"><a href="#cb1-31" aria-hidden="true" tabindex="-1"></a> grid <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-32"><a href="#cb1-32" aria-hidden="true" tabindex="-1"></a> htmltools <span class="dv">0</span>.<span class="dv">5</span>.<span class="fl">8.1</span> <span class="dv">2024-04-04</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-33"><a href="#cb1-33" aria-hidden="true" tabindex="-1"></a> httr <span class="dv">1</span>.<span class="fl">4.7</span> <span class="dv">2023-08-15</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-34"><a href="#cb1-34" aria-hidden="true" tabindex="-1"></a> jsonlite <span class="dv">1</span>.<span class="fl">8.9</span> <span class="dv">2024-09-20</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-35"><a href="#cb1-35" aria-hidden="true" tabindex="-1"></a> knitr <span class="fl">1.48</span> <span class="dv">2024-07-07</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-36"><a href="#cb1-36" aria-hidden="true" tabindex="-1"></a> magrittr <span class="dv">2</span>.<span class="fl">0.3</span> <span class="dv">2022-03-30</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-37"><a href="#cb1-37" aria-hidden="true" tabindex="-1"></a> methods <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-38"><a href="#cb1-38" aria-hidden="true" tabindex="-1"></a> png <span class="fl">0.1</span><span class="dv">-8</span> <span class="dv">2022-11-29</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-39"><a href="#cb1-39" aria-hidden="true" tabindex="-1"></a> R6 <span class="dv">2</span>.<span class="fl">5.1</span> <span class="dv">2021-08-19</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-40"><a href="#cb1-40" aria-hidden="true" tabindex="-1"></a> rlang <span class="dv">1</span>.<span class="fl">1.4</span> <span class="dv">2024-06-04</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-41"><a href="#cb1-41" aria-hidden="true" tabindex="-1"></a> rmarkdown <span class="fl">2.28</span> <span class="dv">2024-08-17</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-42"><a href="#cb1-42" aria-hidden="true" tabindex="-1"></a> sessioninfo <span class="dv">1</span>.<span class="dv">2</span>.<span class="fl">2.9000</span> <span class="dv">2024-10-12</span> [<span class="dv">1</span>] <span class="fu">Github</span> (r<span class="sc">-</span>lib<span class="sc">/</span>sessioninfo<span class="sc">@</span><span class="dv">37</span>c81af)</span>
<span id="cb1-43"><a href="#cb1-43" aria-hidden="true" tabindex="-1"></a> stats <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-44"><a href="#cb1-44" aria-hidden="true" tabindex="-1"></a> tools <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-45"><a href="#cb1-45" aria-hidden="true" tabindex="-1"></a> utils <span class="sc">*</span> <span class="dv">4</span>.<span class="fl">4.1</span> <span class="dv">2024-08-22</span> [<span class="dv">3</span>] local</span>
<span id="cb1-46"><a href="#cb1-46" aria-hidden="true" tabindex="-1"></a> withr <span class="dv">3</span>.<span class="fl">0.1</span> <span class="dv">2024-07-31</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-47"><a href="#cb1-47" aria-hidden="true" tabindex="-1"></a> xfun <span class="fl">0.48</span> <span class="dv">2024-10-03</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-48"><a href="#cb1-48" aria-hidden="true" tabindex="-1"></a> xml2 <span class="dv">1</span>.<span class="fl">3.6</span> <span class="dv">2023-12-04</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-49"><a href="#cb1-49" aria-hidden="true" tabindex="-1"></a> yaml <span class="dv">2</span>.<span class="fl">3.10</span> <span class="dv">2024-07-26</span> [<span class="dv">1</span>] RSPM</span>
<span id="cb1-50"><a href="#cb1-50" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-51"><a href="#cb1-51" aria-hidden="true" tabindex="-1"></a> [<span class="dv">1</span>] <span class="sc">/</span>home<span class="sc">/</span>runner<span class="sc">/</span>work<span class="sc">/</span>_temp<span class="sc">/</span>Library</span>
<span id="cb1-52"><a href="#cb1-52" aria-hidden="true" tabindex="-1"></a> [<span class="dv">2</span>] <span class="sc">/</span>opt<span class="sc">/</span>R<span class="sc">/</span><span class="dv">4</span>.<span class="fl">4.1</span><span class="sc">/</span>lib<span class="sc">/</span>R<span class="sc">/</span>site<span class="sc">-</span>library</span>
<span id="cb1-53"><a href="#cb1-53" aria-hidden="true" tabindex="-1"></a> [<span class="dv">3</span>] <span class="sc">/</span>opt<span class="sc">/</span>R<span class="sc">/</span><span class="dv">4</span>.<span class="fl">4.1</span><span class="sc">/</span>lib<span class="sc">/</span>R<span class="sc">/</span>library</span>
<span id="cb1-54"><a href="#cb1-54" aria-hidden="true" tabindex="-1"></a> <span class="sc">*</span> ── Packages attached to the search path.</span>
<span id="cb1-55"><a href="#cb1-55" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb1-56"><a href="#cb1-56" aria-hidden="true" tabindex="-1"></a>──────────────────────────────────────────────────────────────────────────────</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</details>
<p><br></p>
</div>
</section>
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}
button.setAttribute("title", currentTitle);
button.classList.remove('code-copy-button-checked');
}, 1000);
// clear code selection
e.clearSelection();