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Time out #2

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DanfengSong opened this issue Apr 12, 2024 · 2 comments
Closed

Time out #2

DanfengSong opened this issue Apr 12, 2024 · 2 comments

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@DanfengSong
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Hello,

I cannot run Anisotropy Correction of half-maps as it reports timing out error.

My command is:
spisonet.py reconstruct J131_010_volume_map_half_A.mrc J131_010_volume_map_half_B.mrc --aniso_file FSC3D.mrc --mask J198_mask.mrc --limit_res 2.5 --epochs 30 --alpha 1 --beta 0.5 --output_dir isonet_maps2 --gpuID 0,1,2,3 --acc_batches 2

it wil run like this:
image

after several minutes, it reported error:
image
image

@procyontao
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Hi DanfengSong,

I think still probably due to incompatibility among the python version, cuda version, pytorch version. Did you used the recommended environment to install?

@DanfengSong
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Hi DanfengSong,

I think still probably due to incompatibility among the python version, cuda version, pytorch version. Did you used the recommended environment to install?

Hi Yuntao,

I update the graphic driver, and it works. Thanks.

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