From 778fa3f5e54bacf8e9053f0de828d40f0bd3c609 Mon Sep 17 00:00:00 2001
From: micdom <micdom@noc.ac.uk>
Date: Wed, 7 Jul 2021 12:22:27 +0100
Subject: [PATCH 1/2] Update make_domain_cfg.sh

wait for domain creation job to finish
---
 SCRIPTS/make_domain_cfg.sh | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/SCRIPTS/make_domain_cfg.sh b/SCRIPTS/make_domain_cfg.sh
index 6c9bce8..02ab0b7 100644
--- a/SCRIPTS/make_domain_cfg.sh
+++ b/SCRIPTS/make_domain_cfg.sh
@@ -35,7 +35,16 @@ the provided coordinates and bathymetry netCDF files.
   # Submit the domain creation as a job,
   cd $TDIR/DOMAINcfg
   sbatch job_create.slurm
-
+  
+  #wait for domain creation job to finish
+  for i in {0..7}; do #8 tiles
+  while [ ! -f domain_cfg_000$i.nc ] ;
+  do
+      echo  "wait for domain creation job to finish"
+      sleep 60
+  done
+  done
+  
   # Rebuild the files. Here there are 8 tiles (and rebuilding on a single thread) 
   $TDIR/REBUILD_NEMO/rebuild_nemo -t 1 domain_cfg 8
 

From c785c33b927356415c554aa4844cdfc4af773b9f Mon Sep 17 00:00:00 2001
From: micdom <micdom@noc.ac.uk>
Date: Wed, 7 Jul 2021 12:23:15 +0100
Subject: [PATCH 2/2] Update make_tools.sh

remove repetition of REBUILD_NEMO
---
 SCRIPTS/make_tools.sh | 1 -
 1 file changed, 1 deletion(-)

diff --git a/SCRIPTS/make_tools.sh b/SCRIPTS/make_tools.sh
index 761f046..2a409b5 100644
--- a/SCRIPTS/make_tools.sh
+++ b/SCRIPTS/make_tools.sh
@@ -36,7 +36,6 @@
   ./maketools -m X86_ARCHER2-Cray -n REBUILD_NEMO
   ./maketools -m X86_ARCHER2-Cray -n WEIGHTS
   ./maketools -m X86_ARCHER2-Cray -n DOMAINcfg
-  ./maketools -m X86_ARCHER2-Cray -n REBUILD_NEMO
 
 
   # Make SOSIE tool.