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Insert in the main body of the paper:

We use the lens modeling software PyAutoLens https://github.com/Jammy2211/PyAutoLens) [@pyautolens] [@Nightingale2015] [@Nightingale2018] to...

At the end of the paper (delete as appropriate, see https://pyautofit.readthedocs.io/en/latest/general/citations.html):

Software Citations

This work uses the following software packages: