diff --git a/.github/actions/validTagsList.json b/.github/actions/validTagsList.json index 1018003..b2db807 100644 --- a/.github/actions/validTagsList.json +++ b/.github/actions/validTagsList.json @@ -2,7 +2,9 @@ "development team": [ "Ahrens Lab", "Branson Lab", + "Cardona Lab", "Dudman Lab", + "Funke Lab", "Pachitariu Lab", "Preibisch Lab", "Saalfeld Lab", @@ -28,6 +30,7 @@ "Typescript" ], "open source license": [ + "APACHE", "BSD-3 Clause", "BSD-2 Clause", "CC-by-0", diff --git a/package-lock.json b/package-lock.json index 2cf25c9..5b7508b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -3066,11 +3066,12 @@ } }, "node_modules/braces": { - "version": "3.0.2", - "resolved": "https://registry.npmjs.org/braces/-/braces-3.0.2.tgz", - "integrity": "sha512-b8um+L1RzM3WDSzvhm6gIz1yfTbBt6YTlcEKAvsmqCZZFw46z626lVj9j1yEPW33H5H+lBQpZMP1k8l+78Ha0A==", + "version": "3.0.3", + "resolved": "https://registry.npmjs.org/braces/-/braces-3.0.3.tgz", + "integrity": "sha512-yQbXgO/OSZVD2IsiLlro+7Hf6Q18EJrKSEsdoMzKePKXct3gvD8oLcOQdIzGupr5Fj+EDe8gO/lxc1BzfMpxvA==", + "license": "MIT", "dependencies": { - "fill-range": "^7.0.1" + "fill-range": "^7.1.1" }, "engines": { "node": ">=8" @@ -3927,9 +3928,10 @@ } }, "node_modules/fill-range": { - "version": "7.0.1", - "resolved": "https://registry.npmjs.org/fill-range/-/fill-range-7.0.1.tgz", - "integrity": "sha512-qOo9F+dMUmC2Lcb4BbVvnKJxTPjCm+RRpe4gDuGrzkL7mEVl/djYSu2OdQ2Pa302N4oqkSg9ir6jaLWJ2USVpQ==", + "version": "7.1.1", + "resolved": "https://registry.npmjs.org/fill-range/-/fill-range-7.1.1.tgz", + "integrity": "sha512-YsGpe3WHLK8ZYi4tWDg2Jy3ebRz2rXowDxnld4bkQB00cc/1Zw9AWnC0i9ztDJitivtQvaI9KaLyKrc+hBW0yg==", + "license": "MIT", "dependencies": { "to-regex-range": "^5.0.1" }, @@ -4566,6 +4568,7 @@ "version": "7.0.0", "resolved": "https://registry.npmjs.org/is-number/-/is-number-7.0.0.tgz", "integrity": "sha512-41Cifkg6e8TylSpdtTpeLVMqvSBEVzTttHvERD741+pnZ8ANv0004MRL43QKPDlK9cGvNp6NZWZUBlbGXYxxng==", + "license": "MIT", "engines": { "node": ">=0.12.0" } @@ -7706,6 +7709,7 @@ "version": "5.0.1", "resolved": "https://registry.npmjs.org/to-regex-range/-/to-regex-range-5.0.1.tgz", "integrity": "sha512-65P7iz6X5yEr1cwcgvQxbbIw7Uk3gOy5dIdtZ4rDveLqhrdJP+Li/Hx6tyK0NEb+2GCyneCMJiGqrADCSNk8sQ==", + "license": "MIT", "dependencies": { "is-number": "^7.0.0" }, diff --git a/public/proposals/catena.pdf b/public/proposals/catena.pdf new file mode 100644 index 0000000..b979671 Binary files /dev/null and b/public/proposals/catena.pdf differ diff --git a/src/content/projects/_project-template.md b/src/content/projects/_project-template.md index 5e5b0c4..1473bcd 100644 --- a/src/content/projects/_project-template.md +++ b/src/content/projects/_project-template.md @@ -41,7 +41,9 @@ development team: [ "Ahrens Lab", "Branson Lab", + "Cardona Lab", "Dudman Lab", + "Funke Lab", "Pachitariu Lab", "Preibisch Lab", "Saalfeld Lab", @@ -68,7 +70,15 @@ programming language: "Typescript", ] open source license: - ["BSD-3 Clause", "BSD-2 Clause", "CC-by-0", "GPL-2.0", "GPL-3.0", "MIT"] + [ + "APACHE", + "BSD-3 Clause", + "BSD-2 Clause", + "CC-by-0", + "GPL-2.0", + "GPL-3.0", + "MIT", + ] software type: [ "Command line application", diff --git a/src/content/projects/catena.md b/src/content/projects/catena.md new file mode 100644 index 0000000..4735c3f --- /dev/null +++ b/src/content/projects/catena.md @@ -0,0 +1,27 @@ +--- +title: Catena +tagline: "Pipeline for automated connectome reconstruction from volume Electron Microscopy." +maintainer: Samia Mohinta +project type: [OSSI - current] +OSSI project status: [Active Development] +OSSI proposal link: ../../proposals/catena.pdf +github link: https://github.com/Mohinta2892/catena +documentation link: https://github.com/Mohinta2892/catena +installation instructions link: https://github.com/Mohinta2892/catena +preferred contact method: mailto:sm2667@cam.ac.uk +how to cite text: "Mohinta, S. (2022). Catena: Neuron Segmentation, Synapse Detection, Microtubule tracking and more... (Version 0.1) [Computer software]" +development team: ["Cardona Lab", "Funke Lab", "Scientific Computing Software"] +programming language: ["Python"] +open source license: ["APACHE"] +software type: ["Package"] +use case: + [ + "Electron microscopy (EM)", + "Segmentation", + "Tool packaging/distribution", + "Visualization", + ] +usage environment: ["HPC cluster", "Local installation"] +software ecosystem: ["CUDA", "Napari", "PyTorch", "Tensorflow"] +supported file types: ["HDF5", "N5", "TIFF", "ZARR"] +--- diff --git a/src/data/labNamesUrls.js b/src/data/labNamesUrls.js index 4004a3c..5a835d3 100644 --- a/src/data/labNamesUrls.js +++ b/src/data/labNamesUrls.js @@ -1,6 +1,12 @@ export const allLabNamesAndUrls = [ + ["Ahrens Lab", "https://www.janelia.org/lab/ahrens-lab"], ["Branson Lab", "https://www.janelia.org/lab/branson-lab"], + [ + "Cardona Lab", + "https://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/albert-cardona/", + ], ["Dudman Lab", "https://www.janelia.org/lab/dudman-lab"], + ["Funke Lab", "https://www.janelia.org/lab/funke-lab"], ["Pachitariu Lab", "https://www.janelia.org/lab/pachitariu-lab"], ["Saalfeld Lab", "https://www.janelia.org/lab/saalfeld-lab"], ["Stringer Lab", "https://www.janelia.org/lab/stringer-lab"],