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1.5.0-DEV-538797b8d6.log
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Julia Version 1.5.0-DEV.41
Commit 538797b8d6 (2020-01-09 15:49 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed InvertedIndices ───────────── v1.0.0
Installed ProgressMeter ─────────────── v1.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed Rmath ─────────────────────── v0.6.0
Installed Compat ────────────────────── v2.2.0
Installed Distances ─────────────────── v0.8.2
Installed MacroTools ────────────────── v0.5.3
Installed IncrementalInference ──────── v0.8.3
Installed CodecZlib ─────────────────── v0.6.0
Installed PDMats ────────────────────── v0.9.10
Installed ForwardDiff ───────────────── v0.10.8
Installed TranscodingStreams ────────── v0.9.5
Installed JSON ──────────────────────── v0.21.0
Installed IterTools ─────────────────── v1.3.0
Installed FunctionalStateMachine ────── v0.1.3
Installed NLsolve ───────────────────── v4.2.0
Installed IniFile ───────────────────── v0.5.0
Installed Tables ────────────────────── v0.2.11
Installed FileIO ────────────────────── v1.2.1
Installed Parameters ────────────────── v0.12.0
Installed DataFrames ────────────────── v0.20.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed DiffRules ─────────────────── v1.0.0
Installed Parsers ───────────────────── v0.3.10
Installed Distributions ─────────────── v0.22.0
Installed TransformUtils ────────────── v0.2.2
Installed TableTraits ───────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed Calculus ──────────────────── v0.5.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OpenBLAS_jll ──────────────── v0.3.7+4
Installed Requires ──────────────────── v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed ColorTypes ────────────────── v0.8.1
Installed DiffResults ───────────────── v1.0.2
Installed BinaryProvider ────────────── v0.5.8
Installed ArrayInterface ────────────── v2.3.1
Installed Colors ────────────────────── v0.9.6
Installed MbedTLS ───────────────────── v0.7.0
Installed CategoricalArrays ─────────── v0.7.6
Installed GraphPlot ─────────────────── v0.3.1
Installed HTTP ──────────────────────── v0.8.8
Installed Graphs ────────────────────── v0.10.3
Installed Measures ──────────────────── v0.3.1
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed StaticArrays ──────────────── v0.12.1
Installed LineSearches ──────────────── v7.0.1
Installed FillArrays ────────────────── v0.8.2
Installed JLD2 ──────────────────────── v0.1.11
Installed Arpack ────────────────────── v0.4.0
Installed DataStructures ────────────── v0.17.7
Installed DistributedFactorGraphs ───── v0.5.2
Installed DocStringExtensions ───────── v0.8.1
Installed JSON2 ─────────────────────── v0.3.1
Installed Compose ───────────────────── v0.8.0
Installed Neo4j ─────────────────────── v2.0.0
Installed QuadGK ────────────────────── v2.3.1
Installed NaNMath ───────────────────── v0.3.3
Installed ApproxManifoldProducts ────── v0.1.2
Installed StatsBase ─────────────────── v0.32.0
Installed CommonSubexpressions ──────── v0.2.0
Installed NLSolversBase ─────────────── v7.5.0
Installed Rotations ─────────────────── v0.13.0
Installed StatsFuns ─────────────────── v0.9.3
Installed CoordinateTransformations ─── v0.5.0
Installed OrderedCollections ────────── v1.1.0
Installed Inflate ───────────────────── v0.1.1
Installed DiffEqDiffTools ───────────── v1.7.0
Installed ArnoldiMethod ─────────────── v0.0.4
Installed Optim ─────────────────────── v0.19.7
Installed Arpack_jll ────────────────── v3.5.0+2
Installed PooledArrays ──────────────── v0.5.3
Installed SpecialFunctions ──────────── v0.9.0
Installed SimpleTraits ──────────────── v0.9.1
Installed FixedPointNumbers ─────────── v0.6.1
Installed LightGraphs ───────────────── v1.3.0
Installed DataValueInterfaces ───────── v1.0.0
Installed PositiveFactorizations ────── v0.2.3
Installed KernelDensityEstimate ─────── v0.5.2
Updating `~/.julia/environments/v1.5/Project.toml`
[904591bb] + IncrementalInference v0.8.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
[9bbbb610] + ApproxManifoldProducts v0.1.2
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.6
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.8.1
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.8.0
[150eb455] + CoordinateTransformations v0.5.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.7
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[b5cc3c7e] + DistributedFactorGraphs v0.5.2
[31c24e10] + Distributions v0.22.0
[ffbed154] + DocStringExtensions v0.8.1
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[f6369f11] + ForwardDiff v0.10.8
[3e9e306e] + FunctionalStateMachine v0.1.3
[a2cc645c] + GraphPlot v0.3.1
[86223c79] + Graphs v0.10.3
[cd3eb016] + HTTP v0.8.8
[904591bb] + IncrementalInference v0.8.3
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.11
[682c06a0] + JSON v0.21.0
[2535ab7d] + JSON2 v0.3.1
[2472808a] + KernelDensityEstimate v0.5.2
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.3
[739be429] + MbedTLS v0.7.0
[442fdcdd] + Measures v0.3.1
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[2774e3e8] + NLsolve v4.2.0
[77ba4419] + NaNMath v0.3.3
[d2adbeaf] + Neo4j v2.0.0
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.19.7
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[6038ab10] + Rotations v0.13.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[9b8138ad] + TransformUtils v0.2.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_txptJB/Project.toml`
[no changes]
Updating `/tmp/jl_txptJB/Manifest.toml`
[no changes]
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_E7U5qR/Project.toml`
[no changes]
Updating `/tmp/jl_E7U5qR/Manifest.toml`
[no changes]
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_1bjo3l/Project.toml`
[no changes]
Updating `/tmp/jl_1bjo3l/Manifest.toml`
[no changes]
Testing IncrementalInference
Updating `/tmp/jl_yPpjve/Project.toml`
[no changes]
Updating `/tmp/jl_yPpjve/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_yPpjve/Project.toml`
[9bbbb610] ApproxManifoldProducts v0.1.2
[b5cc3c7e] DistributedFactorGraphs v0.5.2
[31c24e10] Distributions v0.22.0
[ffbed154] DocStringExtensions v0.8.1
[5789e2e9] FileIO v1.2.1
[3e9e306e] FunctionalStateMachine v0.1.3
[86223c79] Graphs v0.10.3
[904591bb] IncrementalInference v0.8.3
[033835bb] JLD2 v0.1.11
[2535ab7d] JSON2 v0.3.1
[2472808a] KernelDensityEstimate v0.5.2
[2774e3e8] NLsolve v4.2.0
[429524aa] Optim v0.19.7
[92933f4c] ProgressMeter v1.2.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.0
[2913bbd2] StatsBase v0.32.0
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[9a3f8284] Random
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[ Info: Multithreaded convolutions possible, Threads.nthreads()=1. See `addFactor!(.;threadmodel=MultiThreaded)`.
[ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
[ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
[ Info: Adding graph visualization tools.
evalPotential sees SecondType(1)
evalPotential also sees SecondAgain(3)
evalPotential sees SecondType(1)
evalPotential sees SecondType(1)
evalPotential also sees SecondAgain(3)
Check the speed is reasonable
Test Summary: | Pass Total
out of module evalPotential... | 3 3
State machine iter=1
do foo!
State machine iter=2
do bar!
State machine iter=3
do foo!
do bar!
do foo!
do foo!
State machine iter=1
do bar!
State machine iter=2
Test Summary: | Pass Total
Test IIF's generic state machine... | 5 5
[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
[ Info: try doautoinit! of x1
[ Info: x1
[ Info: x0
[ Info: x1
[ Info: x0
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
[ Info: Solving over the Bayes (Junction) tree.
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
Si = [:x0]
[ Info:
[ Info: Eliminating x0
[ Info: ===============
[ Info:
[ Info: - Removing x0
[ Info: Looking at x0f2
[ Info: - Breaking link x0f2->x0...
[ Info: - Original links: [:x0]
[ Info: - New links: Symbol[]
[ Info: x0f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x0 to tree...
[ Info: Adding x1 to tree...
Find potential functions for each clique
[ Info: Get potentials x0,x1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
Bayes Tree
[ Info: Do tree based init-inference on tree
State machine iter=1
State machine iter=2
State machine iter=3
State machine iter=4
State machine iter=5
State machine iter=6
[ Info: up w 0 msgs
[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: [2x0p,d1,N100],
[ Info: #2 --
[ Info: [2x0p,d1,N100],
[ Info: #3 --
[ Info: [2x0p,d1,N100],
[ Info: fmcmc! -- solverData(vert=x1).inferdim=1.0
[ Info: fmcmc! -- solverData(vert=x0).inferdim=2.0
[ Info: Outgoing msg density on:
[ Info: prepCliqInitMsgsUp, seps=Symbol[]
State machine iter=7
State machine iter=8
[ Info: transferUpdateSubGraph! -- syms=[:x0, :x1]
[ Info: sym=x0, mem size of val=(1, 100) and (1, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
[ Info: sym=x1, mem size of val=(1, 100) and (1, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
State machine iter=9
[ Info: Finished tree based init-inference
[ Info: x1
[ Info: x0
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
[ Info: x1 is not initialized, and will do so now...
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x0x1f1]
[ Info: do init of x1
[ Info: x1
[ Info: x0
[ Info: x1
[ Info: x0
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
Si = [:x0]
[ Info:
[ Info: Eliminating x0
[ Info: ===============
[ Info:
[ Info: - Removing x0
[ Info: Looking at x0f2
[ Info: - Breaking link x0f2->x0...
[ Info: - Original links: [:x0]
[ Info: - New links: Symbol[]
[ Info: x0f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x0 to tree...
[ Info: Adding x1 to tree...
Find potential functions for each clique
[ Info: Get potentials x0,x1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
Bayes Tree
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams, :initialized, :inferdim, :estimateDict]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
Test Summary: | Pass Total
testing compare functions for variables and factors... | 21 21
[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x0x1f1]
[ Info: do init of x1
[ Info: try doautoinit! of x2
[ Info: try doautoinit! of l1
┌ Warning: compareFactorGraphs will skip comparisons on: [:g, :bn, :IDs, :fIDs, :id, :nodeIDs, :factorIDs, :fifo, :solverParams, :labelDict, :addHistory, :logpath]
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/CompareUtils.jl:317
[ Info: x1
[ Info: x0
Test Summary: | Pass Total
test subgraph functions... | 1 1
Test Summary: | Pass Total
Ensure memory return is working properly... | 1 1
Test Summary: | Pass Total
test the basics | 2 2
[ Info: try doautoinit! of x0
maniT = if length(manifolds) < x
([manifolds[1] for i = 1:x]...,)
else
manifolds
end = (:Euclid, :Euclid)
[ Info: try doautoinit! of x1
Test Summary: | Pass Total
testing basic partial factor functions... | 2 2
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x1f1]
[ Info: do init of x1
[ Info: try doautoinit! of x2
[ Info: try doautoinit! of x2
[ Info: init with useinitfct [:x1x2f1]
[ Info: do init of x2
[ Info: try doautoinit! of x3
[ Info: try doautoinit! of l1
[ Info: try doautoinit! of l1
[ Info: init with useinitfct [:x2l1f1, :x1l1f1]
[ Info: do init of l1
[ Info: [2x0p,d1,N100],
[ Info: try doautoinit! of x3
[ Info: init with useinitfct [:x2x3f1]
[ Info: do init of x3
[ Info: try doautoinit! of l2
Building Bayes net...
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x2, :x1]
[ Info:
[ Info: Eliminating l2
[ Info: ===============
[ Info:
[ Info: - Removing l2
Si = [:x3]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x2x1f1
[ Info: - Breaking link x2x1f1->x1...
[ Info: - Original links: [:x2, :x1]
[ Info: - New links: [:x2]
[ Info: x2x1f1 still has links to other variables, readding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
[ Info: Looking at x2f1
[ Info: - Breaking link x2f1->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f1 doesn't have any other links, not adding it back...
[ Info: Looking at x2f2
[ Info: - Breaking link x2f2->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f2 doesn't have any other links, not adding it back...
Si = [:x3]
[ Info:
[ Info: Eliminating x3
[ Info: ===============
[ Info:
[ Info: - Removing x3
[ Info: Looking at x3f2
[ Info: - Breaking link x3f2->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f2 doesn't have any other links, not adding it back...
[ Info: Looking at x3f1
[ Info: - Breaking link x3f1->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f1 doesn't have any other links, not adding it back...
[ Info: Adding x3 to tree...
[ Info: Adding x2 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding l2 to tree...
[ Info: Adding l1 to tree...
Find potential functions for each clique
[ Info: Get potentials x1,l1,: x2,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials l2,: x3,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x3,x2,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, l2
[ Info: cliq=1 adding factor that is not in separator, l1
[ Info: cliq=1 adding factor that is not in separator, x1
┌ Warning: add test tree verification
└ @ Main ~/.julia/packages/IncrementalInference/8RIan/test/testBayesTreeiSAM2Example.jl:73
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating l2
[ Info: ===============
[ Info:
[ Info: - Removing l2
Si = [:x3]
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x2, :x1]
[ Info:
[ Info: Eliminating x3
[ Info: ===============
[ Info:
[ Info: - Removing x3
[ Info: Looking at x3f1
[ Info: - Breaking link x3f1->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f1 doesn't have any other links, not adding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x2x1f1
[ Info: - Breaking link x2x1f1->x1...
[ Info: - Original links: [:x2, :x1]
[ Info: - New links: [:x2]
[ Info: x2x1f1 still has links to other variables, readding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
[ Info: Looking at x2f3
[ Info: - Breaking link x2f3->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f3 doesn't have any other links, not adding it back...
[ Info: Looking at x2f1
[ Info: - Breaking link x2f1->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f1 doesn't have any other links, not adding it back...
[ Info: Looking at x2f2
[ Info: - Breaking link x2f2->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x2 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding x3 to tree...
[ Info: Adding l1 to tree...
[ Info: Adding l2 to tree...
Find potential functions for each clique
[ Info: Get potentials l2,: x3,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x3,: x2,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=2 adding factor that is not in separator, l2
[ Info: Get potentials x2,x1,l1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, x3
Test Summary: | Pass Total
basic Bayes tree construction | 1 1
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating l2
[ Info: ===============
[ Info:
[ Info: - Removing l2
Si = [:x3]
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x2, :x1]
[ Info:
[ Info: Eliminating x3
[ Info: ===============
[ Info:
[ Info: - Removing x3
[ Info: Looking at x3f1
[ Info: - Breaking link x3f1->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f1 doesn't have any other links, not adding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x2x1f1
[ Info: - Breaking link x2x1f1->x1...
[ Info: - Original links: [:x2, :x1]
[ Info: - New links: [:x2]
[ Info: x2x1f1 still has links to other variables, readding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
[ Info: Looking at x2f3
[ Info: - Breaking link x2f3->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f3 doesn't have any other links, not adding it back...
[ Info: Looking at x2f1
[ Info: - Breaking link x2f1->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f1 doesn't have any other links, not adding it back...
[ Info: Looking at x2f2
[ Info: - Breaking link x2f2->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x2 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding x3 to tree...
[ Info: Adding l1 to tree...
[ Info: Adding l2 to tree...
Find potential functions for each clique
[ Info: Get potentials l2,: x3,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x3,: x2,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=2 adding factor that is not in separator, l2
[ Info: Get potentials x2,x1,l1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, x3
Bayes Tree
Test Summary: | Pass Total
Test loading and saving of Bayes (Junction) tree | 11 11
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating l2
[ Info: ===============
[ Info:
[ Info: - Removing l2
Si = [:x3]
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x2, :x1]
[ Info:
[ Info: Eliminating x3
[ Info: ===============
[ Info:
[ Info: - Removing x3
[ Info: Looking at x3f1
[ Info: - Breaking link x3f1->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f1 doesn't have any other links, not adding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x2x1f1
[ Info: - Breaking link x2x1f1->x1...
[ Info: - Original links: [:x2, :x1]
[ Info: - New links: [:x2]
[ Info: x2x1f1 still has links to other variables, readding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
[ Info: Looking at x2f3
[ Info: - Breaking link x2f3->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f3 doesn't have any other links, not adding it back...
[ Info: Looking at x2f1
[ Info: - Breaking link x2f1->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f1 doesn't have any other links, not adding it back...
[ Info: Looking at x2f2
[ Info: - Breaking link x2f2->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x2 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding x3 to tree...
[ Info: Adding l1 to tree...
[ Info: Adding l2 to tree...
Find potential functions for each clique
[ Info: Get potentials l2,: x3,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x3,: x2,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=2 adding factor that is not in separator, l2
[ Info: Get potentials x2,x1,l1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, x3
Bayes Tree
Test Summary: | Pass Total
Test loading and saving of Bayes (Junction) tree | 11 11
Test Summary: | Pass Total
Ensure converter types can be run from extending namespaces... | 1 1
┌ Warning: Setting serialization module from AbstractDFG - override this in the 'GraphsDFG{SolverParams} structure! This is being ignored.
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/AbstractDFG.jl:21
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x1f1]
[ Info: do init of x1
[ Info: try doautoinit! of x2
┌ Warning: Retrieving serialization module from AbstractDFG - override this in the 'GraphsDFG{SolverParams} structure! This is returning Main
└ @ DistributedFactorGraphs ~/.julia/packages/DistributedFactorGraphs/G2Wc2/src/services/AbstractDFG.jl:25
Test Summary: | Pass Total
packing converters work... | 8 8
Test Summary: | Pass Total
Ensure lambda's work with NLsolve | 1 1
Test Summary: |
minimalistic pattern on how NLsolve is used in IIF. | No tests
Test Summary: | Pass Total
generic root finding by numeric solve of residual functions... | 1 1
a1 = [-1.0 0.003214677760095208 0.5249804467570562; 0.06351907928706924 0.3970578041465178 0.5273288281517141]
0.112220 seconds (172.42 k allocations: 8.766 MiB)
0.096676 seconds (59.61 k allocations: 2.926 MiB, 22.34% gc time)
0.004295 seconds (16.81 k allocations: 1.144 MiB)
zDim = size(measurement[1], 1) = 1
ccw.varidx = solvefor = 2
0.790063 seconds (947.17 k allocations: 45.877 MiB, 2.78% gc time)
and in the reverse direction, achieved by simply changing CommonConvWrapper.varidx to 1...
ccw.varidx = solvefor = 1
0.001581 seconds (7.98 k allocations: 595.062 KiB)
┌ Warning: test not implemented yet
└ @ Main ~/.julia/packages/IncrementalInference/8RIan/test/testCommonConvWrapper.jl:255
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x1f1]
[ Info: do init of x1
[ Info: try doautoinit! of x2
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
Si = [:x1]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x1f2
[ Info: - Breaking link x1f2->x1...
[ Info: - Original links: [:x1]
[ Info: - New links: Symbol[]
[ Info: x1f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x1 to tree...
[ Info: Adding x2 to tree...
Find potential functions for each clique
[ Info: Get potentials x1,x2,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
Bayes Tree
[ Info: Solving over the Bayes (Junction) tree.
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
Si = [:x1]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x1f2
[ Info: - Breaking link x1f2->x1...
[ Info: - Original links: [:x1]
[ Info: - New links: Symbol[]
[ Info: x1f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x1 to tree...
[ Info: Adding x2 to tree...
Find potential functions for each clique
[ Info: Get potentials x1,x2,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
Bayes Tree
[ Info: Do tree based init-inference on tree
State machine iter=1
State machine iter=2
State machine iter=3
State machine iter=4
State machine iter=5
State machine iter=6
[ Info: up w 0 msgs
[ Info: ---------- successive fnc approx ------------x1,x2,:
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------x1,x2,:
[ Info: #1 --
[ Info: [2x0p,d1,N100],
[ Info: #2 --
[ Info: [2x0p,d1,N100],
[ Info: #3 --
[ Info: [2x0p,d1,N100],
[ Info: fmcmc! -- solverData(vert=x2).inferdim=1.0
[ Info: fmcmc! -- solverData(vert=x1).inferdim=2.0
[ Info: Outgoing msg density on:
[ Info: prepCliqInitMsgsUp, seps=Symbol[]
State machine iter=7
State machine iter=8
[ Info: transferUpdateSubGraph! -- syms=[:x1, :x2]
[ Info: sym=x1, mem size of val=(1, 100) and (1, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
[ Info: sym=x2, mem size of val=(1, 100) and (1, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
State machine iter=9
[ Info: Finished tree based init-inference
Test Summary: | Pass Total
GenericWrapParam functors... | 114 114
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
Test Summary: | Pass Total
Test basic convolution result... | 2 2
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x1f1]
[ Info: do init of x1
[ Info: try doautoinit! of x2
Test Summary: | Pass Total
test default userdata::FactorMetadata... | 2 2
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x2, :x1]
[ Info:
[ Info: Eliminating l2
[ Info: ===============
[ Info:
[ Info: - Removing l2
Si = [:x3]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x2x1f1
[ Info: - Breaking link x2x1f1->x1...
[ Info: - Original links: [:x2, :x1]
[ Info: - New links: [:x2]
[ Info: x2x1f1 still has links to other variables, readding it back...
Si = [:x2]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
[ Info: Looking at x2f1
[ Info: - Breaking link x2f1->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f1 doesn't have any other links, not adding it back...
[ Info: Looking at x2f2
[ Info: - Breaking link x2f2->x2...
[ Info: - Original links: [:x2]
[ Info: - New links: Symbol[]
[ Info: x2f2 doesn't have any other links, not adding it back...
Si = [:x3]
[ Info:
[ Info: Eliminating x3
[ Info: ===============
[ Info:
[ Info: - Removing x3
[ Info: Looking at x3f2
[ Info: - Breaking link x3f2->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f2 doesn't have any other links, not adding it back...
[ Info: Looking at x3f1
[ Info: - Breaking link x3f1->x3...
[ Info: - Original links: [:x3]
[ Info: - New links: Symbol[]
[ Info: x3f1 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x3 to tree...
[ Info: Adding x2 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding l2 to tree...
[ Info: Adding l1 to tree...
Find potential functions for each clique
[ Info: Get potentials x1,l1,: x2,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials l2,: x3,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x3,x2,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, l2
[ Info: cliq=1 adding factor that is not in separator, l1
[ Info: cliq=1 adding factor that is not in separator, x1
Test Summary: | Pass Total
Variable ordering Bayes tree member check. | 3 3
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x0
[ Info: ===============
[ Info:
[ Info: - Removing x0
Si = [:l1, :x1]
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
Si = [:x3, :x1]
[ Info:
[ Info: Eliminating x4
[ Info: ===============
[ Info:
[ Info: - Removing x4
Si = [:x5, :x3]
[ Info:
[ Info: Eliminating x6
[ Info: ===============
[ Info:
[ Info: - Removing x6
Si = [:l1, :x5]
[ Info:
[ Info: Eliminating x1
[ Info: ===============