Can't Run pyjulia in Ubuntu 20.04 #384
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+1 |
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+1 This is probably a bad recommendation!!, but the problem seems to be with the dynamic linking to libjulia.so. Then it works for me. At least the example
Maybe somebody can work out a more solid solution |
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+1 |
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+1 having the same problem |
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The output of would be useful for debugging this. |
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I have the same error on opensuse tumbleweed. Below is the output from So looks like it fails to install pycall. I get the same error trying to install in the julia REPL. Some further digging shows that this seems to be an error with julia/or packaging of julia linking to the wrong libgit. See the julia bug here: JuliaLang/julia#33111 (comment) which also provides a workaround (clone manually into |
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If you have Julia 1.4 or above, it looks like you can set the environment variable |
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I just fixed by manually cloning the General registry and now I can install PyCall, however I still get the same error: [ins] In [1]: from julia.api import Julia
...: jl = Julia(compiled_modules=False)
...: from julia import Base
...: Base.sind(90)
---------------------------------------------------------------------------
CalledProcessError Traceback (most recent call last)
<ipython-input-1-135f1876e7df> in <module>
1 from julia.api import Julia
----> 2 jl = Julia(compiled_modules=False)
3 from julia import Base
4 Base.sind(90)
~/.local/lib/python3.8/site-packages/julia/core.py in __init__(self, init_julia, jl_init_path, runtime, jl_runtime_path, debug, **julia_options)
465 self.api = get_libjulia()
466 elif init_julia:
--> 467 jlinfo = JuliaInfo.load(runtime)
468 if jlinfo.version_info < (0, 7):
469 raise RuntimeError("PyJulia does not support Julia < 0.7 anymore")
~/.local/lib/python3.8/site-packages/julia/juliainfo.py in load(cls, julia, **popen_kwargs)
85 )
86 else:
---> 87 raise subprocess.CalledProcessError(
88 retcode, [julia, "-e", "..."], stdout, stderr
89 )
CalledProcessError: Command '['julia', '-e', '...']' returned non-zero exit status 1.Output of julia.install() [ins] In [1]: import julia
[ins] In [2]: julia.install()
[ Info: Julia version info
Julia Version 1.3.1
Commit 2d5741174c (2019-12-30 21:36 UTC)
Platform Info:
OS: Linux (x86_64-suse-linux)
uname: Linux 5.7.1-1-default #1 SMP Wed Jun 10 11:53:46 UTC 2020 (6a549f6) x86_64 x86_64
CPU: AMD Ryzen 5 3600 6-Core Processor:
speed user nice sys idle irq
#1-12 2198 MHz 245649 s 146 s 44275 s 16642154 s 0 s
Memory: 31.297752380371094 GB (22802.3359375 MB free)
Uptime: 14158.0 sec
Load Avg: 0.1298828125 0.35595703125 0.453125
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-6.0.1 (ORCJIT, znver1)
Environment:
AF_PATH = /home/jschrod/Downloads/Scientific/OpenCL/arrayfire-3
HOME = /home/jschrod
MANPATH = /home/jschrod/.local/share/man:/usr/share/man:/usr/local/share/man
OMF_PATH = /home/jschrod/.local/share/omf
PATH = /usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/jschrod/.local/bin:/home/jschrod/.emacs.d/bin:/home/jschrod/.local/bin:/home/jschrod/.emacs.d/bin
TERM = xterm-kitty
[ Info: Julia executable: /usr/bin/julia
[ Info: Trying to import PyCall...
┌ Info: PyCall is already installed and compatible with Python executable.
│
│ PyCall:
│ python: python3
│ libpython: /usr/lib64/libpython3.8.so.1.0
│ Python:
│ python: /usr/bin/python3
└ libpython: /usr/lib64/libpython3.8.so.1.0so something else is going on. Might be a linking error as said above. |
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The output of |
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I think I found the issue. It seems under opensuse at least the simlink from |
Well, PyJulia should at least throw a better error! (I wonder why |
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Hello, firts thanks for the efort to bing this on. I have follow the installation instruction of the page (https://pyjulia.readthedocs.io/en/latest/installation.html) but whe i test the program I get the fowwing error:
Python 3.8.2 (default, Apr 27 2020, 15:53:34)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
'>>>' from julia import Base
Traceback (most recent call last):
File "", line 1, in
File "", line 991, in _find_and_load
File "", line 975, in _find_and_load_unlocked
File "", line 655, in _load_unlocked
File "", line 618, in _load_backward_compatible
File "/home/pmaldona/.local/lib/python3.8/site-packages/julia/core.py", line 247, in load_module
elif self.julia.isafunction(juliapath):
File "/home/pmaldona/.local/lib/python3.8/site-packages/julia/core.py", line 238, in julia
self.class.julia = julia = Julia()
File "/home/pmaldona/.local/lib/python3.8/site-packages/julia/core.py", line 467, in init
jlinfo = JuliaInfo.load(runtime)
File "/home/pmaldona/.local/lib/python3.8/site-packages/julia/juliainfo.py", line 87, in load
raise subprocess.CalledProcessError(
subprocess.CalledProcessError: Command '['julia', '-e', '...']' returned non-zero exit status 1.
Thanks in advance for the help.
Greetings
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