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<title>Life-Science Grid Community - biomed publications</title>
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<h1> <a id="title" class="anchor" href="#title" aria-hidden="true"><span class="octicon octicon-link"></span></a>Publications obtained using resources supporting the biomed VO</h1>
<h2>Foreword</h2>
<p>Note that access to the biomed VO is not based on publication records, however, resource providers may ask for quantitative indicators to justify their support to the VO. Therefore, as a VO member, you are requested to <strong>let VO administrators know about your own publications</strong> (biomed-vo-managers_#AT#_googlegroups.com). This is of major importance for the sustainability of the VO.</p>
<h2>2013</h2>
<h3>Book chapters</h3>
<h3>Papers in peer-reviewd international journals</h3>
<ul><li>R. Ferreira da Silva, T. Glatard, F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, Future Generation Computer Systems (FGCS), in press, 2013.</li>
</ul>
<h3>Papers in peer-reviewed international conferences</h3>
<ul><li>R. Ferreira da Silva, T. Glatard, F. Desprez, Workflow fairness control on online and non-clairvoyant distributed computing platforms, Euro-Par'13, Aachen, Germany, 2013.</li>
<li>R. Ferreira da Silva, T. Glatard, F. Desprez, On-line, non-clairvoyant optimization of workflow activity granularity on grids, Euro-Par'13, Aachen, Germany, 2013.</li>
</ul>
<h2>2012</h2>
<h3>Book chapters</h3>
<h3>Papers in peer-reviewd international journals</h3>
<h3>Papers in peer-reviewed international conferences</h3>
<ul><li>T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, G. Forestier, B. Gibaud, C. Lartizien, H. Liebgott, et al., "Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography", IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp. accepted, 2012.</li>
<li>R. Ferreira da Silva, T. Glatard, F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), Ottawa, Canada, 2012.</li>
<li>R. Ferreira da Silva, T. Glatard, A science-gateway workload archive to study pilot jobs, user activity, bag of tasks, task sub-steps, and workflow executions, CoreGRID/ERCIM Workshop on Grids, Clouds and P2P Computing (CGWS-2012), Rhodes Island, Greece, 2012.</li>
</ul>
<h3>Papers in peer-reviewed national conferences</h3>
<ul><li>R. Ferreira da Silva, T. Glatard, F. Desprez, A science-gateway workload archive: application to the self-healing of workflow incidents, Journées scientifiques mésocentres et France Grilles 2012, Paris, France, 2012.</li>
</ul>
<h2>2011</h2>
<h3>Book chapters</h3>
<ul><li>S. Camarasu-Pop, T. Glatard, H. Benoit-Cattin, and D. Sarrut, "Enabling Grids for GATE Monte-Carlo Radiation Therapy Simulations with the GATE-Lab", Applications of Monte Carlo Method in Science and Engineering, 2011.</li>
</ul>
<h3>Papers in peer-reviewed international journals</h3>
<ul><li>T. Glatard, and S. Camarasu-Pop, "A model of pilot-job resource provisioning on production grids", Parallel Computing, vol. Available online 9 April 2011, 2011</li>
<li>L. Grevillot, D. Bertrand, F. Dessy, N. Freud, and D. Sarrut. "A Monte Carlo pencil beam scanning model for proton treatment plan simulation using GATE/GEANT4." Physics in Medicine and Biology, 56(16):5203-5219, 2011.</li>
<li>L. Grevillot, T Frisson, D Maneval, N Zahra, J-N Badel, and D Sarrut. "Simulation of a 6 MV Elekta Precise Linac photon beam using GATE/GEANT4." Physics in Medicine and Biology, 56(4):903-918, 2011.</li>
</ul>
<h3>Papers in peer-reviewed international conferences</h3>
<ul><li>B. Leporq, S. Camarasu-Pop, F. Pilleul, and O. Beuf, "3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent", ISMRM, Montreal, Canada, pp. 2046, May, 2011.</li>
<li>S. B. Fredj, T. Glatard, C. Casta, and P. Clarysse, "An exploration framework for segmentation parameter spaces", IEEE International Conference on Image Processing , Brussels, Belgium, 2011.</li>
<li>R. Ferreira da Silva, S. Camarasu-Pop, B. Grenier, V. Hamar, D. Manset, J. Montagnat, J. Revillard, J. R. Balderrama, A. Tsaregorodtsev, and T. Glatard, "Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform", HealthGrid 2011, Bristol, UK, 2011.</li>
<li>A. Marion, G. Forestier, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, B. Gibaud, T. Glatard, P. Hugonnard, C. Lartizien, et al., "Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011.</li>
<li>P. Gueth, S. Camarasu-Pop, T. Glatard, L. Grevillot, and D. Sarrut, "PBS proton treatment plan simulation with the GATE-Lab", 50th International PTCOG meeting (Particle Therapy Co-Operative Group), Philadelphia, US, 2011.</li>
<li>G. Forestier, A. Marion, H. Benoit-Cattin, P. Clarysse, D. Friboulet, T. Glatard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Tabary, et al., "Sharing object models for multi-modality medical image simulation: a semantic approach", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011.</li>
<li>B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat, P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. Rojas Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, M. Pélégrini-Issac. "A federated system for sharing and reuse of images and image processing tools in neuroimaging", Computer Assisted Radiology and Surgery (CARS'11), Berlin, Germany, June 2011.</li>
<li>T-T. Doan, Q-M. Dao, T-H. Vu, H-P. Pham, V. Breton, H-Q. Nguyen, J. Salzeman, Y. Legré, T-H. Le, J. Montagnat. "g-INFO portal: a solution to monitor Influenza A on the Grid for non-grid users", HealthGrid'11, Bristol, UK, June 2011</li>
<li>A. Kertesz, F. Otvos, P. Kacsuk, Gridifying the TINKER conformer generator application for gLite Grid, M.R. Guarracino et al. (Eds.): Euro-Par 2010 Workshops, LNCS 6586, pp. 185-192, 2011.</li>
</ul>
<h3>Miscellaneous</h3>
<h2>2010</h2>
<h3>Book chapters</h3>
<h3>Papers in peer-reviewed international journals</h3>
<ul><li>S. Camarasu-Pop, T. Glatard, J. T. Moscicki, H. Benoit-Cattin, and D. Sarrut, "Dynamic partitioning of GATE Monte-Carlo simulations on EGEE", Journal of Grid Computing, vol. 8, no. 2, pp. 241-259, mar, 2010</li>
<li>D. Lingrand, J. Montagnat, J. Martyniak, D. Colling. "Optimization of jobs submission on the EGEE production grid: modeling faults using workload", Journal of Grid Computing , vol. 8 no. 2, pp. 305-321, mar 2010</li>
<li>P. Descourt, T. Carlier, Y. Du, X. Song, I. Buvat, E. C. Frey, M. Bardiès, B. M. W. Tsui, D. Visvikis, "Implementation of angular response function modeling in SPECT simulations with GATE", Phys Med Biol, 55 (2010) N253-N266</li>
</ul>
<h3>Papers in peer-reviewed international conferences</h3>
<ul><li>D. Lingrand, J. Montagnat. "Efficient resubmission strategies to design robust grid production environments", IEEE e-Science, Brisbane, Australia, December 2010.</li>
<li>T. Li, S. Camarasu-Pop, T. Glatard, T. Grenier, and H. Benoit-Cattin, "Optimization of Mean-Shift scale parameters on the EGEE grid", Studies in health technology and informatics, Proceedings of Healthgrid 2010, vol. 159, pp. 203-214, 2010.</li>
<li>W. - J. Tan, C. T. M. Ching, S. Camarasu-Pop, P. Calvat, and T. Glatard, "Two experiments with application-level quality of service on the EGEE grid", Proceeding of the 2nd workshop on Grids meets autonomic computing, New York, NY, USA, ACM, pp. 11–20, 2010.</li>
<li>J. Montagnat, T. Glatard, D. Reimert, K. Maheshwari, E. Caron, and F. Desprez, "Workflow-based comparison of two Distributed Computing Infrastructures", 5th Workshop on Workflows in Support of Large-Scale Science (WORKS10), New-Orleans, LA, 10/2010.</li>
<li>Soonwook Hwang, Sehoon Lee, Sangdo Lee, Jincheol Kim, Vincent Breton, Jean Salzemann, Doman Kim, "A Grid-enabled Problem Solving Environment for in-silico Screening in Drug Discovery", 5th International Conference on Computer Sciences and Convergence Information Technology (ICCIT 2010), Seoul, Korea, December 2010.</li>
<li>J. Passerat-Palmbach, C. Mazel, A. Mahul and D. R. C. Hill, "Reliable Initialization of GPU-enabled Parallel Stochastic Simulations Using Mersenne Twister for Graphics Processors", Europeans Simulation and Modeling Conference 2010 (ESM2010), Hasselt, Belgium, October 2010, pp 187-195</li>
</ul>
<h3>Miscellaneous</h3>
<h2>2009</h2>
<h3>Book chapters</h3>
<h3>Papers in peer-reviewed international journals</h3>
<h3>Papers in peer-reviewed international conferences</h3>
<ul><li>T. Carlier, P. Descourt, L. Maigne, D. Visvikis, M. Bardiès, I. Buvat. "Efficient simulations of Iodine 131 SPECT scans using GATE", Proc IEEE Nuclear Science Symp Medical Imaging Conf, (2009) pp 3412-14.</li>
</ul>
<h3>Miscellaneous</h3>
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