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<!doctype html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=no">
<title>Life-Science Grid Community</title>
<!-- Bootstrap core CSS -->
<link rel="stylesheet" href="bootstrap/3.3.5/css/bootstrap.min.css">
<link rel="stylesheet" href="css/styles.css">
<!-- HTML5 shim and Respond.js for IE8 support of HTML5 elements and media queries -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.2/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
<script src="js/jquery.1.11.3.min.js"></script>
</head>
<body>
<script>
$(document).ready(function(){ $('#sidebar').load('sidebar.html'); });
</script>
<div class="globcontainer">
<div class="row">
<!-- Left menu -->
<div id="sidebar" class="col-sm-3 "></div>
<!-- Body -->
<div class="col-sm-8">
<!-- Welcome ------------------------------------------------------->
<h1>Welcome to the Life-Science Grid Community</h1>
<p>The Life-Science Grid Community (LSGC) is a virtual research community to support life-science applications on the <a href="http://www.egi.eu">European Grid Infrastructure (EGI)</a>.
LSGC represents some 500 users from 6 Virtual Organizations.</p>
<!-- News ------------------------------------------------------------->
<div class="panel panel-default">
<div class="panel-heading"><strong>News</strong></div>
<div class="panel-body">
<ul>
<li>July 2015: Virtual Imaging Platform (VIP) <a href="http://www.isgtw.org/feature/identifying-new-biomarkers-multiple-sclerosis">mentioned in iSGTW</a>.</li>
<li>July 2015: With 81 million CPU hours consumed during the
last year, biomed is the most active non-physics VO in
EGI, according
to <a href="http://accounting.egi.eu/egi.php?query=normcpu&startYear=2014&startMonth=7&endYear=2015&endMonth=6&yRange=VO&xRange=DATE&voGroup=all&chart=GRBAR&scale=LIN&localJobs=onlygridjobs">EGI's
accounting</a>.<br/> Pie Chart showing the share in
Normalised CPU time (kSI2K) per VO (June 2014-June 2015).<br/>
<img src="images/67d98bb04c9dd9dec7f2f017400cb3b96d516385.png"
alt="pie_chart" width="500"/>
</li>
<li>April 2015: <a href="http://www.egi.eu/news-and-media/newsletters/Inspired_Issue_19/vip.html">Virtual Imaging Platform (VIP)</a> inspires EGI. Also see a <a href="http://www.egi.eu/case-studies/medical/ms_biomarkers.html">typical use-case on multiple sclerosis.</a>.</li>
<li>April 2014: <a href="https://operations-portal.egi.eu/vapor?vo=biomed">VAPOR </a> is now released in production and supports 8 VOs.</li>
<li>December 2013: <a href="https://operations-portal.egi.eu/vapor?vo=biomed">VAPOR beta version</a> released.</li>
<li>December 2013: <a href="https://mosgrid.de">MosGrid VO</a> joins LSGC.</li>
<li>November 2013: according to EGI's accounting statistics,
LSGC VOs have been the most active ones in Life-Sciences
in terms of number of executed jobs and consumed CPU
during the last year. This graph shows the per-VO
distribution of the normalized CPU time consumed by
Life-Science VOs in EGI from December 2012 to November
2013 (total: 230,367,332 normalized CPU hours):<br/>
<img src="images/lsgc-04155638-600px.png"
alt="pie_chart" width="500"/>
</li>
<li>May 2013: Johan Montagnat is elected as LSGC coordinator for the next year.</li>
<li>April 2013: <a href="https://www.eu-decide.eu">DECIDE</a> joins LSGC.</li>
</ul>
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading"><strong>LSGC Description and Contractual Documents</strong></div>
<div class="panel-body">
<p>
<ul>
<li>LSGC purpose and goals (<a href="lsgc/files/purpose11-24215810.pdf">pdf</a>).</li>
<li><a href="http://documents.egi.eu/document/486">Memorandum of Understanding</a> signed with EGI.</li>
<li>Contribution to EGI's scientific use cases (<a href="lsgc/files/EGI-Scientific-Case-LSG-v1.1-24231337.pdf">pdf</a>).</li>
<li>Presentation at Spanish Network for e-Science, 2010 (<a href="lsgc/files/slides1-24215839.pdf">pdf</a>) (<a href="lsgc/files/slides1-24215911.odp">odp</a>).</li>
<li>Presentation at Cracow Grid Workshop, 2011 (<a href="lsgc/files/cracow1-24220345.pdf">pdf</a>).</li>
</ul>
</p>
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading"><strong>Areas of Expertise</strong></div>
<div class="panel-body">
<p>
<ul>
<li>Life-Sciences
<ul>
<li>Medical imaging
<ul>
<li>neuroimaging</li>
<li>cardiovascular imaging</li>
<li>radiotherapy simulation</li>
</ul>
</li>
<li>Bioinformatics
<ul>
<li>genomics</li>
<li>proteomics</li>
<li>biobanking</li>
<li>transcriptomics</li>
</ul>
</li>
</ul>
</li>
<li>High-level services for life scientists
<ul>
<li>grid application porting, execution and monitoring</li>
<li>grid workflow management</li>
<li>biomedical data management and sharing</li>
<li>user interfaces: scientific gateways, browsers</li>
<li>VO administration and operations, services operating and development</li>
</ul>
</li>
</ul>
</p>
</div>
</div>
<!-- Contributors and collaboration -------------------------------------------->
<div class="panel panel-default">
<div class="panel-heading" id="contributors"><strong>Current collaborations</strong></div>
<div class="panel-body">
<p><a href="http://www.egi.eu"><img src="images/File-egi2.jpg" alt="EGI_logo"/></a> The European Grid Initiative is a central and critical body to help liaising with NGIs. It provides us with sustained user support and brings our technical requirements to the technology providers (see <a href="http://documents.egi.eu/document/486"><b>Memorandum of Understanding</b></a>).</p>
<p>The following National Grid Initiatives (NGIs) actively follow and/or contribute to LSGC activities:</p>
<ul>
<li><a href="http://www.surfsara.nl/"><b>SURFsara (Dutch NGI)</b></a></li>
<li><a href="http://www.france-grilles.fr"><b>France Grilles (French NGI)</b></a></li>
<li><a href="http://www.italiangrid.org"><b>Italian Grid Infrastructure</b></a></li>
<li><a href="http://www.ibergrid.eu/"><b>Ibergrid</b></a> (Spanish/Portuguese NGI)</li>
</ul>
<p>NGIs of the following countries contribute compute and storage resources + admin teams to LSGC users: Asia Pacific, Bulgaria, Canada, Croatia, Cyprus, Germany, GISELA project, France, Greece, Hungary, Ireland, Italy, Latin America, Netherlands, Poland, Portugal, Russia, Slovakia, Spain, Turkey, UK.</p>
<p><a href="mailto:[email protected]"><b>Contact us</b></a> if you think your NGI should or shouldn't appear in this list.</p>
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading"><strong>Past collaborations</strong></div>
<div class="panel-body">
<ul>
<li><a href="http://www.scalalife.eu/"><b>Scalalife</b></a>. <img src="images/scalalife3-24221013.jpg"> </li>
<li>Swiss NGI</li>
</ul>
</div>
</div>
</div> <!-- .col-sm7 -->
</div> <!-- .row -->
</div><!-- .globcontainer -->
<!-- Bootstrap core JavaScript ================================================== -->
<!-- Placed at the end of the document so the pages load faster -->
<script src="bootstrap/3.3.5/js/bootstrap.min.js"></script>
</body>
</html>