DESCRIPTION

Package: csaw
Version: 1.37.1
Date: 2023-11-29
Title: ChIP-Seq Analysis with Windows
Authors@R:
    c(person("Aaron", "Lun", role=c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
    person("Gordon", "Smyth", role="aut"))
Depends:
    GenomicRanges,
    SummarizedExperiment
Imports:
    Rcpp,
    Matrix,
    BiocGenerics,
    Rsamtools,
    edgeR,
    limma,
    methods,
    S4Vectors,
    IRanges,
    GenomeInfoDb,
    stats,
    BiocParallel,
    metapod,
    utils
Suggests:
    AnnotationDbi,
    org.Mm.eg.db,
    TxDb.Mmusculus.UCSC.mm10.knownGene,
    testthat,
    GenomicFeatures,
    GenomicAlignments,
    knitr,
    BiocStyle,
    rmarkdown,
    BiocManager
LinkingTo:
    Rhtslib,
    zlibbioc,
    Rcpp
biocViews:
    MultipleComparison,
    ChIPSeq,
    Normalization,
    Sequencing,
    Coverage,
    Genetics,
    Annotation,
    DifferentialPeakCalling
Description:
    Detection of differentially bound regions in ChIP-seq data with sliding windows,
    with methods for normalization and proper FDR control.
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11, GNU make
VignetteBuilder: knitr
RoxygenNote: 7.1.1