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genes.tsv from https://www.pharmgkb.org/downloads raise a stackOverflow outOfMemory error issue when running r2rml after AutoR2RML. Even if the genes.tsv files is only a couple Mo
What have been tried by Ammar:
Loading the TSV file in LibreOffice, saving it and processing it
Solves the issue. LibreOffice might do some preprocessing solving our error. But they also modify the content of some files
Removing some columns from the mapping.trig
Note: could be related to COHD issue (outOfMemory error on 1G SQL table)
The text was updated successfully, but these errors were encountered:
Still same issue with the new Apache Drill configuration for COHD 27G dataset
R2RML aborting generation of triples after getting error:
2020-03-25 11:15:03 ERROR TriplesMap:293 - R2RMLException.
r2rml.engine.R2RMLException: RESOURCE ERROR:
External Sort encountered an error while spilling to disk
genes.tsv from https://www.pharmgkb.org/downloads raise a stackOverflow outOfMemory error issue when running r2rml after AutoR2RML. Even if the genes.tsv files is only a couple Mo
What have been tried by Ammar:
Note: could be related to COHD issue (outOfMemory error on 1G SQL table)
The text was updated successfully, but these errors were encountered: