diff --git a/README.md b/README.md index 37b34d6..54af763 100644 --- a/README.md +++ b/README.md @@ -13,22 +13,18 @@ To run `wg-blimp` you need a UNIX environment that contains a [Bioconda](http:// It is advised to install `wg-blimp` through Bioconda. It is **strongly** recommended to install `wg-blimp` in a fresh environment, as it has many dependencies that may conflict with other packages, for this you can use: ``` -conda create -n wg-blimp wg-blimp r-base==4.0.3 +conda create -n wg-blimp wg-blimp r-base==4.1.1 ``` -***WARNING***: Installing wg-blimp will install mamba and conda as a dependency, so make sure to not install `wg-blimp` in an environment that is used for other purposes, and always run `conda deactivate` after running `wg-blimp`.Otherwise you might accidentally use the `conda` version installed by `wg-blimp` instead of your own. +***WARNING***: You need to install `mamba` as well if you intend to use `wg-blimp`'s cluster mode (e.g. on SLURM clusters) using the following command: -### Docker - -We bundled a full `wg-blimp` installation into a Docker container. You may pull our image using ``` -docker pull imimarw/wg-blimp:v0.9.8 +conda create -n wg-blimp wg-blimp r-base==4.1.1 mamba ``` -Once the image was downloaded and extracted, you can start the docker container with -``` -docker run -it -v : imimarw/wg-blimp:v0.9.8 -``` +However, this will install `mamba` and `conda` as a dependency, so make sure to not install `wg-blimp` in an environment that is used for other purposes, and always run `conda deactivate` after running `wg-blimp`. +Otherwise you might accidentally use the `conda` version installed along `mamba` instead of your own. + ### From source You can also install `wg-blimp` from source using